Rmu_sc0006705.1_g000017

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006705.1
OG0000177
Physical Location & Seq
Reverse (-)
91541 .. 92146
606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006705.1_g000017.1.cds

Sequence Viewer

Length: 291 bp
atggggaggcgcggaggtgtaggtgggaggcgctggagtgggctggtgctgcaggcgggtcgagatcgggtcggcgctgtggaggcctggtgccggacggatgtgcagggggctgcagtgcttgcggcttgctgcttctgctgctgctcgtttgacagctttgtgaaaatatttcctggagtggctcatggatggacaatgaggtacaatgcagaggatgaatctgcagtcaagagtgctgaagaggctcatttggacatgttaaattggtttaacaagtatgtcatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

96

Amino Acids

10.58

Weight (kDa)

7.6

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 90
AccII CGCG 1 cut(s) 12
AciI CCGC 3 cut(s) 12, 56, 125
AcuI CTGAAG 1 cut(s) 261
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 93
AflIII ACRYGT 1 cut(s) 258
AjnI CCWGG 2 cut(s) 86, 175
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 5 cut(s) 49, 113, 132, 141, 144
AspLEI GCGC 3 cut(s) 12, 33, 77
BanI GGYRCC 1 cut(s) 90
BbvI GCAGC 5 cut(s) 36, 100, 119, 128, 131
BccI CCATC 1 cut(s) 186
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 2 cut(s) 88, 177
BfmI CTRYAG 3 cut(s) 50, 114, 225
BfoI RGCGCY 2 cut(s) 34, 78
BisI GCNGC 6 cut(s) 50, 114, 126, 133, 142, 145
BlsI GCNGC 6 cut(s) 51, 115, 127, 134, 143, 146
Bme1390I CCNGG 2 cut(s) 88, 177
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 88, 177
BpmI CTGGAG 2 cut(s) 55, 198
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseBI CCWGG 2 cut(s) 88, 177
BseGI GGATG 3 cut(s) 106, 197, 223
BseLI CCNNNNNNNGG 1 cut(s) 93
BseXI GCAGC 5 cut(s) 36, 100, 119, 128, 131
BsgI GTGCAG 1 cut(s) 125
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 93
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 3 cut(s) 12, 56, 125
BspANI GGCC 1 cut(s) 86
BspFNI CGCG 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 3 cut(s) 54, 118, 229
BspT107I GGYRCC 1 cut(s) 90
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 88, 177
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 3 cut(s) 54, 123, 130
BstF5I GGATG 3 cut(s) 106, 197, 223
BstFNI CGCG 1 cut(s) 12
BstH2I RGCGCY 2 cut(s) 34, 78
BstHHI GCGC 3 cut(s) 12, 33, 77
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 6 cut(s) 49, 83, 122, 138, 141, 245
BstNI CCWGG 2 cut(s) 88, 177
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 2 cut(s) 86, 175
BstSFI CTRYAG 3 cut(s) 50, 114, 225
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 5 cut(s) 36, 100, 119, 128, 131
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 3 cut(s) 106, 197, 223
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 54, 123, 130
CfoI GCGC 3 cut(s) 12, 33, 77
Csp6I GTAC 1 cut(s) 205
CviAII CATG 3 cut(s) 188, 259, 286
CviJI RGCY 7 cut(s) 43, 86, 113, 128, 159, 185, 248
CviKI_1 RGCY 7 cut(s) 43, 86, 113, 128, 159, 185, 248
CviQI GTAC 1 cut(s) 205
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 86, 175
FaeI CATG 3 cut(s) 191, 262, 289
FaiI YATR 4 cut(s) 189, 260, 282, 287
FatI CATG 3 cut(s) 187, 258, 285
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 6 cut(s) 50, 114, 126, 133, 142, 145
FokI GGATG 3 cut(s) 113, 204, 230
Fsp4HI GCNGC 6 cut(s) 50, 114, 126, 133, 142, 145
GlaI GCGC 3 cut(s) 11, 32, 76
GluI GCNGC 6 cut(s) 50, 114, 126, 133, 142, 145
GsuI CTGGAG 2 cut(s) 55, 198
HaeII RGCGCY 2 cut(s) 34, 78
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 94
HhaI GCGC 3 cut(s) 12, 33, 77
Hin1II CATG 3 cut(s) 191, 262, 289
Hin6I GCGC 3 cut(s) 10, 31, 75
HinP1I GCGC 3 cut(s) 10, 31, 75
HinfI GANTC 1 cut(s) 221
HpaII CCGG 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 62, 232
HpyCH4V TGCA 5 cut(s) 52, 106, 116, 212, 227
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 83, 122, 138, 141, 245
Hsp92II CATG 3 cut(s) 191, 262, 289
HspAI GCGC 3 cut(s) 10, 31, 75
Kzo9I GATC 1 cut(s) 64
LpnPI CCDG 9 cut(s) 19, 29, 38, 73, 92, 100, 107, 162, 189
Lsp1109I GCAGC 5 cut(s) 36, 100, 119, 128, 131
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 1 cut(s) 254
MluCI AATT 1 cut(s) 265
MnlI CCTC 6 cut(s) 8, 21, 76, 195, 208, 238
MseI TTAA 2 cut(s) 263, 273
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 2 cut(s) 88, 177
MvaI CCWGG 2 cut(s) 88, 177
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 6 cut(s) 49, 83, 122, 138, 141, 245
NdeII GATC 1 cut(s) 64
NlaIII CATG 3 cut(s) 191, 262, 289
NlaIV GGNNCC 1 cut(s) 92
NspI RCATGY 1 cut(s) 262
PceI AGGCCT 1 cut(s) 86
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 1 cut(s) 221
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 6 cut(s) 51, 115, 127, 134, 143, 146
PscI ACATGT 1 cut(s) 258
Psp6I CCWGG 2 cut(s) 86, 175
PspGI CCWGG 2 cut(s) 86, 175
PspN4I GGNNCC 1 cut(s) 92
PstI CTGCAG 3 cut(s) 54, 118, 229
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 2 cut(s) 263, 273
SatI GCNGC 6 cut(s) 50, 114, 126, 133, 142, 145
Sau3AI GATC 1 cut(s) 64
ScrFI CCNGG 2 cut(s) 88, 177
SetI ASST 4 cut(s) 19, 25, 161, 206
SfcI CTRYAG 3 cut(s) 50, 114, 225
Sse9I AATT 1 cut(s) 265
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 3 cut(s) 12, 56, 125
SspI AATATT 1 cut(s) 171
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 2 cut(s) 86, 175
TaqI TCGA 1 cut(s) 61
TasI AATT 1 cut(s) 265
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 263, 273
Tru9I TTAA 2 cut(s) 263, 273
TscAI CASTG 1 cut(s) 123
TseI GCWGC 5 cut(s) 49, 113, 132, 141, 144
TspDTI ATGAA 1 cut(s) 234
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 1 cut(s) 123
XceI RCATGY 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.