RLG00000029451

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000177
Physical Location & Seq
Forward (+)
38909251 .. 38911163
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029451

Sequence Viewer

Length: 480 bp
ATGATTGGATCCGATCTTGTCCGGATCGTCATCGTTGGCATTGGAATCGGAGCCGTAGGGGCCAGAATTGAAAGACGACGTCTGTTTGCGATTTTGCTGTTGGTGTTTGATTCCGAGGATGAGCTTGTGCTTCTTCTTGGCGCCCTAGCCTCGTCGTCGTCGTCCGGCGGAGAAGGAGAGGGCGCGTTAAGCTTGCCGTTGCGGCGAGTGGCTGGGCGGGCGGGGGCGGCGACGCTAGACAAAGTTGCTAGCAATGCTGGATTCAATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATACAATCCGAACAACACACAGAGGAATATGACAGACTGGCTAAGGGACCATGGAACACTCTTACTATTCCAACTTCTGAAACTTAATTCATCAGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACCGAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

160

Amino Acids

16.97

Weight (kDa)

6.1

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 1 cut(s) 185
AccIII TCCGGA 1 cut(s) 21
AciI CCGC 6 cut(s) 168, 202, 217, 221, 227, 407
AclWI GGATC 4 cut(s) 3, 16, 32, 290
AcyI GRCGYC 2 cut(s) 79, 141
AgsI TTSAA 2 cut(s) 71, 265
AluBI AGCT 3 cut(s) 124, 192, 412
AluI AGCT 3 cut(s) 124, 192, 412
AlwI GGATC 4 cut(s) 3, 16, 32, 290
Aor13HI TCCGGA 1 cut(s) 21
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 437
AspLEI GCGC 2 cut(s) 143, 185
AspS9I GGNCC 2 cut(s) 60, 346
AsuNHI GCTAGC 1 cut(s) 248
AvaII GGWCC 1 cut(s) 346
BamHI GGATCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 424
BceAI ACGGC 2 cut(s) 38, 181
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BfaI CTAG 3 cut(s) 146, 236, 249
BfmI CTRYAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 144
BglI GCCNNNNNGGC 2 cut(s) 59, 202
BisI GCNGC 3 cut(s) 203, 228, 438
BlsI GCNGC 3 cut(s) 204, 229, 439
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 60, 346
BmiI GGNNCC 6 cut(s) 10, 52, 61, 142, 276, 347
BmtI GCTAGC 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 2 cut(s) 79, 141
BsaJI CCNNGG 3 cut(s) 114, 349, 432
BsaWI WCCGGW 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 341
Bse3DI GCAATG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 21
BseDI CCNNGG 3 cut(s) 114, 349, 432
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 29
BseMI GCAATG 1 cut(s) 259
BseNI ACTGG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 424
BseYI CCCAGC 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 140
BsiSI CCGG 2 cut(s) 22, 165
BslFI GGGAC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 21
Bsp143I GATC 4 cut(s) 8, 13, 24, 295
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 6 cut(s) 168, 202, 217, 221, 227, 407
BspANI GGCC 1 cut(s) 62
BspEI TCCGGA 1 cut(s) 21
BspFNI CGCG 1 cut(s) 185
BspLI GGNNCC 6 cut(s) 10, 52, 61, 142, 276, 347
BspMAI CTGCAG 1 cut(s) 442
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 4 cut(s) 3, 16, 32, 290
BspT107I GGYRCC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 114, 349, 432
BssMI GATC 4 cut(s) 8, 13, 24, 295
BssNI GRCGYC 2 cut(s) 79, 141
BssT1I CCWWGG 1 cut(s) 349
BstACI GRCGYC 2 cut(s) 79, 141
BstC8I GCNNGC 3 cut(s) 194, 219, 250
BstDEI CTNAG 1 cut(s) 341
BstDSI CCRYGG 1 cut(s) 349
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 185
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 185
BstKTI GATC 4 cut(s) 11, 16, 27, 298
BstMBI GATC 4 cut(s) 8, 13, 24, 295
BstMWI GCNNNNNNNGC 6 cut(s) 59, 189, 202, 218, 227, 254
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 2 cut(s) 8, 295
BstYI RGATCY 2 cut(s) 8, 295
BsuRI GGCC 1 cut(s) 62
BtgI CCRYGG 1 cut(s) 349
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 3 cut(s) 194, 219, 250
CfoI GCGC 2 cut(s) 143, 185
Cfr13I GGNCC 2 cut(s) 60, 346
CseI GACGC 1 cut(s) 241
CviAII CATG 1 cut(s) 350
CviJI RGCY 9 cut(s) 53, 62, 124, 149, 192, 212, 340, 412, 437
CviKI_1 RGCY 9 cut(s) 53, 62, 124, 149, 192, 212, 340, 412, 437
DdeI CTNAG 1 cut(s) 341
DinI GGCGCC 1 cut(s) 142
DpnI GATC 4 cut(s) 10, 15, 26, 297
DpnII GATC 4 cut(s) 8, 13, 24, 295
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 349
EgeI GGCGCC 1 cut(s) 142
EheI GGCGCC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 349
FaeI CATG 1 cut(s) 353
FaiI YATR 4 cut(s) 291, 301, 329, 351
FaqI GGGAC 1 cut(s) 359
FatI CATG 1 cut(s) 349
FauI CCCGC 2 cut(s) 210, 214
Fnu4HI GCNGC 3 cut(s) 203, 228, 438
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 3 cut(s) 203, 228, 438
FspBI CTAG 3 cut(s) 146, 236, 249
GlaI GCGC 2 cut(s) 142, 184
GluI GCNGC 3 cut(s) 203, 228, 438
GsaI CCCAGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 22, 165
HgaI GACGC 1 cut(s) 241
HhaI GCGC 2 cut(s) 143, 185
Hin1I GRCGYC 2 cut(s) 79, 141
Hin1II CATG 1 cut(s) 353
Hin6I GCGC 2 cut(s) 141, 183
HinP1I GCGC 2 cut(s) 141, 183
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 4 cut(s) 45, 110, 261, 473
HpaII CCGG 2 cut(s) 22, 165
Hpy188I TCNGA 5 cut(s) 13, 50, 115, 309, 378
Hpy188III TCNNGA 4 cut(s) 22, 278, 470, 477
Hpy99I CGWCG 5 cut(s) 81, 157, 160, 163, 235
HpyAV CCTTC 2 cut(s) 167, 465
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 440
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 189, 202, 218, 227, 254
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 1 cut(s) 79
Hsp92I GRCGYC 2 cut(s) 79, 141
Hsp92II CATG 1 cut(s) 353
HspAI GCGC 2 cut(s) 141, 183
KasI GGCGCC 1 cut(s) 140
Kpn2I TCCGGA 1 cut(s) 21
Kzo9I GATC 4 cut(s) 8, 13, 24, 295
LmnI GCTCC 2 cut(s) 50, 409
LpnPI CCDG 8 cut(s) 35, 76, 178, 198, 243, 291, 322, 378
Lsp1109I GCAGC 1 cut(s) 424
MaeI CTAG 3 cut(s) 146, 236, 249
MaeII ACGT 1 cut(s) 79
MaeIII GTNAC 2 cut(s) 447, 463
MalI GATC 4 cut(s) 10, 15, 26, 297
MboI GATC 4 cut(s) 8, 13, 24, 295
MboII GAAGA 1 cut(s) 125
MflI RGATCY 2 cut(s) 8, 295
MluCI AATT 2 cut(s) 66, 385
Mly113I GGCGCC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 5 cut(s) 109, 160, 172, 315, 427
MroI TCCGGA 1 cut(s) 21
MseI TTAA 2 cut(s) 188, 384
MspI CCGG 2 cut(s) 22, 165
MvnI CGCG 1 cut(s) 185
MwoI GCNNNNNNNGC 6 cut(s) 59, 189, 202, 218, 227, 254
NarI GGCGCC 1 cut(s) 141
NcoI CCATGG 1 cut(s) 349
NdeII GATC 4 cut(s) 8, 13, 24, 295
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 1 cut(s) 353
NlaIV GGNNCC 6 cut(s) 10, 52, 61, 142, 276, 347
NmuCI GTSAC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PfeI GAWTC 3 cut(s) 45, 110, 261
PflFI GACNNNGTC 1 cut(s) 78
PkrI GCNGC 3 cut(s) 204, 229, 439
PluTI GGCGCC 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 212
PspN4I GGNNCC 6 cut(s) 10, 52, 61, 142, 276, 347
PspPI GGNCC 2 cut(s) 60, 346
PstI CTGCAG 1 cut(s) 442
PsuI RGATCY 2 cut(s) 8, 295
PsyI GACNNNGTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 188, 384
SatI GCNGC 3 cut(s) 203, 228, 438
Sau3AI GATC 4 cut(s) 8, 13, 24, 295
Sau96I GGNCC 2 cut(s) 60, 346
SetI ASST 4 cut(s) 82, 126, 194, 414
SfcI CTRYAG 1 cut(s) 438
SfoI GGCGCC 1 cut(s) 142
SinI GGWCC 1 cut(s) 346
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 2 cut(s) 66, 385
SsiI CCGC 6 cut(s) 168, 202, 217, 221, 227, 407
SspDI GGCGCC 1 cut(s) 140
SspMI CTAG 3 cut(s) 146, 236, 249
StyI CCWWGG 1 cut(s) 349
TaiI ACGT 1 cut(s) 82
TasI AATT 2 cut(s) 66, 385
TauI GCSGC 2 cut(s) 205, 230
TfiI GAWTC 3 cut(s) 45, 110, 261
Tru1I TTAA 2 cut(s) 188, 384
Tru9I TTAA 2 cut(s) 188, 384
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 1 cut(s) 378
Tth111I GACNNNGTC 1 cut(s) 78
VpaK11BI GGWCC 1 cut(s) 346
XspI CTAG 3 cut(s) 146, 236, 249
ZraI GACGTC 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.