Rroxscaffold_5G00361920

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000177
Physical Location & Seq
Forward (+)
42656909 .. 42658649
1741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361920.1

Sequence Viewer

Length: 606 bp
ATGGTGCCTGGCCTTCTTTTTTATAGGAAGCTCGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTATGGAGACCCTTATGTACCTCCAGCTGATGGATCCCATGGCGGTATACCTACATGGCTGAAGGGTCATGGACCGGAGAAGGGATTTGAAGATGTTAAAGTAGTTATTGAAGCTCTAAAAAGTAAAGGTGTTTCTGCAATCGGTGCTGCAGGCTTCTGTTGGGGAGCCAAGGTTGTAGTTGAACTTGCAAAGGGCGACTTTATCCAAGCTGCTGTTCTGGCTCATCCTTCATTTGTCACTGTGGATGATATCAAGGCTGTTAAGGTTCCAATATCTATACTTGGAGCTGAGATTGATCGGATGTCTCCGCCTGAAGTTGTGAAACAATTTGAAGAGGCTTTGACTGCAAAGTCTGAGAGTGAAAGCTTAGTAGCTTATATTTCTTTGAAAAAAGGTGGAGCTGATGAAATAGTAGGTGCTGCATCCATGAGGTCAAGTTATGATGATGAGAGCAGAGAACAAATCCACACAGGCAAACTCCTCCTCTGTACACCCAGAGGCACCTGCATCTTTAGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

201

Amino Acids

21.46

Weight (kDa)

6.1

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 9 - 154 8.2e-18 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 596
AasI GACNNNNNNGTC 1 cut(s) 433
Acc36I ACCTGC 1 cut(s) 596
AccB1I GGYRCC 2 cut(s) 4, 584
AccB7I CCANNNNNTGG 1 cut(s) 113
AccI GTMKAC 1 cut(s) 130
AciI CCGC 2 cut(s) 126, 392
AclWI GGATC 2 cut(s) 111, 124
AcuI CTGAAG 2 cut(s) 164, 417
AfaI GTAC 2 cut(s) 102, 574
AfiI CCNNNNNNNGG 2 cut(s) 113, 164
AgsI TTSAA 5 cut(s) 173, 194, 266, 416, 472
AjnI CCWGG 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 282, 314
AluBI AGCT 9 cut(s) 31, 50, 110, 197, 293, 371, 450, 458, 485
AluI AGCT 9 cut(s) 31, 50, 110, 197, 293, 371, 450, 458, 485
Alw26I GTCTC 2 cut(s) 84, 393
AlwI GGATC 2 cut(s) 111, 124
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 5 cut(s) 47, 50, 230, 293, 503
AspS9I GGNCC 2 cut(s) 70, 155
AvaII GGWCC 2 cut(s) 70, 155
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 2 cut(s) 4, 584
BbvI GCAGC 5 cut(s) 37, 59, 217, 280, 490
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 84, 393
BfmI CTRYAG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 596
BisI GCNGC 5 cut(s) 48, 51, 231, 294, 504
BlsI GCNGC 5 cut(s) 49, 52, 232, 295, 505
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 2 cut(s) 70, 155
BmgT120I GGNCC 2 cut(s) 70, 155
BmiI GGNNCC 6 cut(s) 6, 72, 118, 250, 351, 586
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 2 cut(s) 515, 600
BpmI CTGGAG 1 cut(s) 90
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 2 cut(s) 121, 252
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 164
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 121, 252
BseGI GGATG 4 cut(s) 307, 334, 390, 506
BseLI CCNNNNNNNGG 2 cut(s) 113, 164
BseMII CTCAG 2 cut(s) 363, 429
BseRI GAGGAG 2 cut(s) 554, 557
BseXI GCAGC 5 cut(s) 37, 59, 217, 280, 490
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 2 cut(s) 4, 584
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 113, 164
BsmAI GTCTC 2 cut(s) 84, 393
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 572
Bsp143I GATC 2 cut(s) 116, 379
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 2 cut(s) 126, 392
BspANI GGCC 1 cut(s) 12
BspCNI CTCAG 2 cut(s) 364, 430
BspLI GGNNCC 6 cut(s) 6, 72, 118, 250, 351, 586
BspMAI CTGCAG 1 cut(s) 235
BspMI ACCTGC 1 cut(s) 596
BspPI GGATC 2 cut(s) 111, 124
BspT107I GGYRCC 2 cut(s) 4, 584
BspTNI GGTCTC 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 572
BssECI CCNNGG 2 cut(s) 121, 252
BssMI GATC 2 cut(s) 116, 379
BssNAI GTATAC 1 cut(s) 131
BssT1I CCWWGG 2 cut(s) 121, 252
Bst1107I GTATAC 1 cut(s) 131
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 1 cut(s) 572
BstC8I GCNNGC 3 cut(s) 33, 55, 235
BstDEI CTNAG 3 cut(s) 372, 438, 451
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 4 cut(s) 307, 334, 390, 506
BstKTI GATC 2 cut(s) 119, 382
BstMAI GTCTC 2 cut(s) 84, 393
BstMBI GATC 2 cut(s) 116, 379
BstMWI GCNNNNNNNGC 3 cut(s) 227, 302, 428
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 5 cut(s) 37, 59, 217, 280, 490
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BstZ17I GTATAC 1 cut(s) 131
BsuRI GGCC 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 4 cut(s) 307, 334, 390, 506
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 596
Cac8I GCNNGC 3 cut(s) 33, 55, 235
CaiI CAGNNNCTG 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 70, 155
Csp6I GTAC 2 cut(s) 101, 573
CviAII CATG 4 cut(s) 122, 138, 152, 511
CviQI GTAC 2 cut(s) 101, 573
DdeI CTNAG 3 cut(s) 372, 438, 451
DpnI GATC 2 cut(s) 118, 381
DpnII GATC 2 cut(s) 116, 379
DrdI GACNNNNNNGTC 1 cut(s) 433
DseDI GACNNNNNNGTC 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 381
Eco130I CCWWGG 2 cut(s) 121, 252
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 70, 155
Eco57I CTGAAG 2 cut(s) 164, 417
EcoRII CCWGG 1 cut(s) 7
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 121, 252
ErhI CCWWGG 2 cut(s) 121, 252
FaeI CATG 4 cut(s) 125, 141, 155, 514
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 1 cut(s) 56
FatI CATG 4 cut(s) 121, 137, 151, 510
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 5 cut(s) 48, 51, 231, 294, 504
FokI GGATG 4 cut(s) 294, 341, 397, 493
Fsp4HI GCNGC 5 cut(s) 48, 51, 231, 294, 504
GluI GCNGC 5 cut(s) 48, 51, 231, 294, 504
GsuI CTGGAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 158
Hin1II CATG 4 cut(s) 125, 141, 155, 514
HindIII AAGCTT 1 cut(s) 448
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 2 cut(s) 131, 575
Hpy188I TCNGA 2 cut(s) 384, 439
Hpy8I GTNNAC 2 cut(s) 131, 575
HpyAV CCTTC 4 cut(s) 23, 139, 157, 321
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 7 cut(s) 47, 221, 233, 272, 431, 506, 591
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 302, 428
HpyF3I CTNAG 3 cut(s) 372, 438, 451
Hsp92II CATG 4 cut(s) 125, 141, 155, 514
Kzo9I GATC 2 cut(s) 116, 379
LmnI GCTCC 3 cut(s) 248, 368, 482
Lsp1109I GCAGC 5 cut(s) 37, 59, 217, 280, 490
LweI GCATC 2 cut(s) 515, 600
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 118, 381
MboI GATC 2 cut(s) 116, 379
MboII GAAGA 2 cut(s) 185, 428
MflI RGATCY 1 cut(s) 116
MluCI AATT 1 cut(s) 410
MnlI CCTC 6 cut(s) 114, 412, 507, 575, 575, 578
MseI TTAA 2 cut(s) 180, 345
MspA1I CMGCKG 2 cut(s) 50, 110
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 3 cut(s) 227, 302, 428
NcoI CCATGG 1 cut(s) 121
NdeII GATC 2 cut(s) 116, 379
NlaIII CATG 4 cut(s) 125, 141, 155, 514
NlaIV GGNNCC 6 cut(s) 6, 72, 118, 250, 351, 586
NmuCI GTSAC 1 cut(s) 319
PaqCI CACCTGC 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 5 cut(s) 49, 52, 232, 295, 505
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 6 cut(s) 6, 72, 118, 250, 351, 586
PspPI GGNCC 2 cut(s) 70, 155
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 1 cut(s) 116
PvuII CAGCTG 2 cut(s) 50, 110
RsaI GTAC 2 cut(s) 102, 574
RsaNI GTAC 2 cut(s) 101, 573
SaqAI TTAA 2 cut(s) 180, 345
SatI GCNGC 5 cut(s) 48, 51, 231, 294, 504
Sau3AI GATC 2 cut(s) 116, 379
Sau96I GGNCC 2 cut(s) 70, 155
ScrFI CCNGG 1 cut(s) 9
SfaNI GCATC 2 cut(s) 515, 600
SfcI CTRYAG 1 cut(s) 231
SinI GGWCC 2 cut(s) 70, 155
Sse9I AATT 1 cut(s) 410
SsiI CCGC 2 cut(s) 126, 392
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 2 cut(s) 121, 252
TaaI ACNGT 1 cut(s) 325
TasI AATT 1 cut(s) 410
TatI WGTACW 1 cut(s) 572
Tru1I TTAA 2 cut(s) 180, 345
Tru9I TTAA 2 cut(s) 180, 345
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 5 cut(s) 47, 50, 230, 293, 503
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 303, 504
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 70, 155
XmiI GTMKAC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.