Rmu_sc0000935.1_g000010

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000935.1
OG0000177
Physical Location & Seq
Forward (+)
33089 .. 35458
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000935.1_g000010.1.cds

Sequence Viewer

Length: 750 bp
atgtcaggccctgcgtgctgctcaaaccctccagcccttaacccagcaagtggttccggccatgttgaaaagcttgctggtctggactcctatgtcactggctctcctgactccaagcttgccgttcttctcattgctgacatttttggctatgaagctccactcttgaggaagctcgcagacaaagttgcagctgctgggttctttgttgtggtacctgatttcttttatggagatgcttttcctggtgatgctggaccagttggaaactcttcttctctacctatttggttaaagacacatttaccgatcaaggcatctgaagctgcaaaaccattacttgaagccttaaagagtaaaggtgtttctgcaattggggctgtaggcttctgttggggaggggagttcttcttttccaaggctgcggttgaacttgcaaagtatgatgactttctccatgcttctgtcttgtgccattcttcattcgtcactgtggacgatttcaaggcggttaaggttcccatttctgtacttggagctgagattgatccgatttcgccacctgacgtcgtgaaacaatttgaagaggttttaacagcaagacctgagatcaaaagccatgtgaagatattcccaaaagtgcaacatgggtggaccgtgaggtacaacgctgaagatgaggctgctgttaagtgtgctgaggaggctcatcaagacatactggattggttctttagccatgtcaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

249

Amino Acids

26.63

Weight (kDa)

5.46

Isoelectric Point (pI)

31.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AatII GACGTC 1 cut(s) 570
Acc65I GGTACC 1 cut(s) 214
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 2 cut(s) 425, 509
AclWI GGATC 1 cut(s) 542
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 342, 693
AcyI GRCGYC 1 cut(s) 567
AfaI GTAC 3 cut(s) 216, 531, 665
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 5 cut(s) 68, 344, 431, 505, 584
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 7 cut(s) 73, 118, 158, 175, 194, 326, 539
AluI AGCT 7 cut(s) 73, 118, 158, 175, 194, 326, 539
AlwI GGATC 1 cut(s) 542
AlwNI CAGNNNCTG 2 cut(s) 11, 197
AoxI GGCC 2 cut(s) 7, 58
ApeKI GCWGC 6 cut(s) 18, 191, 194, 326, 422, 683
Asp700I GAANNNNTTC 2 cut(s) 271, 629
Asp718I GGTACC 1 cut(s) 214
AspS9I GGNCC 3 cut(s) 8, 257, 654
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 2 cut(s) 257, 654
BanI GGYRCC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 6 cut(s) 5, 181, 203, 313, 409, 670
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 6 cut(s) 19, 192, 195, 327, 423, 684
BlsI GCNGC 6 cut(s) 20, 193, 196, 328, 424, 685
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 2 cut(s) 257, 654
BmgT120I GGNCC 3 cut(s) 8, 257, 654
BmiI GGNNCC 3 cut(s) 55, 216, 519
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 3 cut(s) 226, 241, 326
BpmI CTGGAG 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 1 cut(s) 417
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 103, 260, 726
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 531, 597, 690
BseNI ACTGG 3 cut(s) 103, 260, 726
BseRI GAGGAG 1 cut(s) 716
BseXI GCAGC 6 cut(s) 5, 181, 203, 313, 409, 670
BseYI CCCAGC 2 cut(s) 43, 197
BshFI GGCC 2 cut(s) 9, 60
BshNI GGYRCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 2 cut(s) 9, 60
Bsp143I GATC 3 cut(s) 309, 547, 609
BspACI CCGC 2 cut(s) 425, 509
BspANI GGCC 2 cut(s) 9, 60
BspCNI CTCAG 3 cut(s) 532, 598, 691
BspLI GGNNCC 3 cut(s) 55, 216, 519
BspPI GGATC 1 cut(s) 542
BspT107I GGYRCC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 3 cut(s) 103, 260, 726
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 3 cut(s) 309, 547, 609
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 493, 658
Bst6I CTCTTC 2 cut(s) 277, 579
BstACI GRCGYC 1 cut(s) 567
BstC8I GCNNGC 4 cut(s) 16, 75, 120, 177
BstDEI CTNAG 3 cut(s) 540, 606, 699
BstKTI GATC 3 cut(s) 312, 550, 612
BstMBI GATC 3 cut(s) 309, 547, 609
BstMWI GCNNNNNNNGC 4 cut(s) 15, 323, 377, 704
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 6 cut(s) 5, 181, 203, 313, 409, 670
BsuRI GGCC 2 cut(s) 9, 60
BtsIMutI CAGTG 2 cut(s) 96, 489
Cac8I GCNNGC 4 cut(s) 16, 75, 120, 177
CaiI CAGNNNCTG 2 cut(s) 11, 197
Cfr13I GGNCC 3 cut(s) 8, 257, 654
Csp6I GTAC 3 cut(s) 215, 530, 664
CspCI CAANNNNNGTGG 2 cut(s) 632, 667
CviAII CATG 5 cut(s) 62, 458, 620, 647, 740
CviQI GTAC 3 cut(s) 215, 530, 664
DdeI CTNAG 3 cut(s) 540, 606, 699
DpnI GATC 3 cut(s) 311, 549, 611
DpnII GATC 3 cut(s) 309, 547, 609
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 277, 579
EarI CTCTTC 2 cut(s) 277, 579
Eco130I CCWWGG 1 cut(s) 417
Eco47I GGWCC 2 cut(s) 257, 654
Eco57I CTGAAG 2 cut(s) 342, 693
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 5 cut(s) 65, 461, 623, 650, 743
FatI CATG 5 cut(s) 61, 457, 619, 646, 739
Fnu4HI GCNGC 6 cut(s) 19, 192, 195, 327, 423, 684
Fsp4HI GCNGC 6 cut(s) 19, 192, 195, 327, 423, 684
GluI GCNGC 6 cut(s) 19, 192, 195, 327, 423, 684
GsaI CCCAGC 2 cut(s) 47, 201
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 2 cut(s) 9, 60
HapII CCGG 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 5 cut(s) 65, 461, 623, 650, 743
HindIII AAGCTT 2 cut(s) 71, 116
HinfI GANTC 2 cut(s) 86, 110
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 496, 654
Hpy188I TCNGA 2 cut(s) 322, 552
Hpy188III TCNNGA 5 cut(s) 83, 107, 166, 571, 713
Hpy8I GTNNAC 2 cut(s) 496, 654
Hpy99I CGWCG 1 cut(s) 572
HpyCH4III ACNGT 2 cut(s) 493, 658
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 5 cut(s) 191, 329, 371, 437, 643
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 323, 377, 704
HpyF3I CTNAG 3 cut(s) 540, 606, 699
HpySE526I ACGT 1 cut(s) 567
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 5 cut(s) 65, 461, 623, 650, 743
KpnI GGTACC 1 cut(s) 218
Kzo9I GATC 3 cut(s) 309, 547, 609
LmnI GCTCC 2 cut(s) 163, 536
Lsp1109I GCAGC 6 cut(s) 5, 181, 203, 313, 409, 670
LweI GCATC 3 cut(s) 226, 241, 326
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 94, 487
MalI GATC 3 cut(s) 311, 549, 611
MboI GATC 3 cut(s) 309, 547, 609
MboII GAAGA 8 cut(s) 119, 264, 267, 400, 471, 596, 637, 686
MfeI CAATTG 1 cut(s) 372
MluCI AATT 2 cut(s) 372, 578
MlyI GAGTC 2 cut(s) 80, 104
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 8 cut(s) 39, 162, 392, 580, 654, 673, 694, 697
MroXI GAANNNNTTC 2 cut(s) 271, 629
MseI TTAA 6 cut(s) 39, 293, 350, 513, 593, 690
MspA1I CMGCKG 1 cut(s) 194
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 4 cut(s) 15, 323, 377, 704
NdeII GATC 3 cut(s) 309, 547, 609
NlaIII CATG 5 cut(s) 65, 461, 623, 650, 743
NlaIV GGNNCC 3 cut(s) 55, 216, 519
NmuCI GTSAC 2 cut(s) 94, 487
PdmI GAANNNNTTC 2 cut(s) 271, 629
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 6 cut(s) 20, 193, 196, 328, 424, 685
PleI GAGTC 2 cut(s) 80, 104
PpsI GAGTC 2 cut(s) 80, 104
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 2 cut(s) 43, 197
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 3 cut(s) 55, 216, 519
PspPI GGNCC 3 cut(s) 8, 257, 654
PstNI CAGNNNCTG 2 cut(s) 11, 197
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 3 cut(s) 216, 531, 665
RsaNI GTAC 3 cut(s) 215, 530, 664
SaqAI TTAA 6 cut(s) 39, 293, 350, 513, 593, 690
SatI GCNGC 6 cut(s) 19, 192, 195, 327, 423, 684
Sau3AI GATC 3 cut(s) 309, 547, 609
Sau96I GGNCC 3 cut(s) 8, 257, 654
SchI GAGTC 2 cut(s) 80, 104
ScrFI CCNGG 1 cut(s) 246
SfaNI GCATC 3 cut(s) 226, 241, 326
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 2 cut(s) 257, 654
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 372, 578
SsiI CCGC 2 cut(s) 425, 509
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 493, 658
TaiI ACGT 1 cut(s) 570
TasI AATT 2 cut(s) 372, 578
TatI WGTACW 1 cut(s) 529
Tru1I TTAA 6 cut(s) 39, 293, 350, 513, 593, 690
Tru9I TTAA 6 cut(s) 39, 293, 350, 513, 593, 690
TscAI CASTG 2 cut(s) 103, 496
TseFI GTSAC 2 cut(s) 94, 487
TseI GCWGC 6 cut(s) 18, 191, 194, 326, 422, 683
Tsp45I GTSAC 2 cut(s) 94, 487
TspDTI ATGAA 2 cut(s) 168, 471
TspRI CASTG 2 cut(s) 103, 496
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 2 cut(s) 257, 654
XmnI GAANNNNTTC 2 cut(s) 271, 629
ZraI GACGTC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.