FvH4_6g29270

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000177
Physical Location & Seq
Reverse (-)
22580816 .. 22583694
2879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g29270.t1

Sequence Viewer

Length: 240 bp
ATGAGGGTTAAATCTCCGATCGCCACTCTAGGAGCTGAGATTGACAACTACTCTCCACCAGAACTCGTCAAAAAGTTTGAGGAGATAGTGAATGCTAAACCCCAGATATTCCCAAAAGTTGCTCGTGGTTGGGCTGTAAGGTATGATGTTGATGATGAAACAGCTGCAAAAAGTGCAGAGGAAGCTCATAATGACATGTTGCAGTGGTTTGCTAAGCATGTGGTACCTAACATTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

80

Amino Acids

8.92

Weight (kDa)

5.59

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 223
AfaI GTAC 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 195
AluBI AGCT 3 cut(s) 35, 164, 185
AluI AGCT 3 cut(s) 35, 164, 185
ApeKI GCWGC 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 223
BauI CACGAG 1 cut(s) 123
BbvI GCAGC 1 cut(s) 151
BfaI CTAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 165
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 225
Bpu1102I GCTNAGC 1 cut(s) 213
BseMII CTCAG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 195
Bsh1285I CGRYCG 1 cut(s) 21
BshNI GGYRCC 1 cut(s) 223
BsiEI CGRYCG 1 cut(s) 21
BsmI GAATGC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 18
Bsp1720I GCTNAGC 1 cut(s) 213
BspCNI CTCAG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 225
BspT107I GGYRCC 1 cut(s) 223
BssMI GATC 1 cut(s) 18
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 36, 213
BstKTI GATC 1 cut(s) 21
BstMBI GATC 1 cut(s) 18
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 2 cut(s) 173, 182
BstNSI RCATGY 2 cut(s) 199, 221
BstV1I GCAGC 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
Csp6I GTAC 1 cut(s) 224
CviAII CATG 2 cut(s) 196, 218
CviJI RGCY 4 cut(s) 35, 134, 164, 185
CviKI_1 RGCY 4 cut(s) 35, 134, 164, 185
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 2 cut(s) 36, 213
DpnI GATC 1 cut(s) 20
DpnII GATC 1 cut(s) 18
FaeI CATG 2 cut(s) 199, 221
FaiI YATR 4 cut(s) 144, 189, 197, 219
FatI CATG 2 cut(s) 195, 217
Fnu4HI GCNGC 1 cut(s) 165
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 29
GluI GCNGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 199, 221
Hpy188I TCNGA 1 cut(s) 18
HpyCH4V TGCA 3 cut(s) 167, 176, 202
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 182
HpyF3I CTNAG 2 cut(s) 36, 213
Hsp92II CATG 2 cut(s) 199, 221
KpnI GGTACC 1 cut(s) 227
Kzo9I GATC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 2 cut(s) 72, 116
Lsp1109I GCAGC 1 cut(s) 151
MaeI CTAG 1 cut(s) 29
MalI GATC 1 cut(s) 20
MboI GATC 1 cut(s) 18
MnlI CCTC 2 cut(s) 73, 172
MseI TTAA 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 164
Mva1269I GAATGC 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 173, 182
NdeII GATC 1 cut(s) 18
NlaIII CATG 2 cut(s) 199, 221
NlaIV GGNNCC 1 cut(s) 225
NspI RCATGY 2 cut(s) 199, 221
PciI ACATGT 1 cut(s) 195
PctI GAATGC 1 cut(s) 97
PkrI GCNGC 1 cut(s) 166
Ple19I CGATCG 1 cut(s) 21
PscI ACATGT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 225
PvuI CGATCG 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 1 cut(s) 18
SetI ASST 5 cut(s) 37, 143, 166, 187, 229
SgeI CNNG 8 cut(s) 41, 71, 77, 115, 135, 137, 208, 230
SspMI CTAG 1 cut(s) 29
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 1 cut(s) 209
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 171
TspRI CASTG 1 cut(s) 209
XceI RCATGY 2 cut(s) 199, 221
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.