Prupe.1G149700_v2.0.a1

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000177
Physical Location & Seq
Reverse (-)
11744707 .. 11748698
3992 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G149700.1

Sequence Viewer

Length: 738 bp
ATGTCAGGCCCTCAGTGCTGCTCAAACCCTCCAACCATCAACCCATCAAGTGGCTCCGGCCATGTTGAAAAGCTTGGTGGTCTCGACTCCTATGTCACTGGCTCCCCTGACTCCAAGCTTGCTATTCTTCTCGTCTCTGACATTTTTGGATTTGAAGCTCCAAACTTGAGGAAGCTTGCTGACAAAGTTGCAGCTGCTGGGTTCTTTGTTGTTGTCCCTGACTTCTTGTACGGAGACCCTTATGCACCTGAAGATGCCAATAGACCTCTACCTGTTTGGATAAAAGATCATGGACCGGCCAACGGATTTGAAGATGCAAAACCAGTTCTTGGAGCTTTAAGAAGGAAAGGTTTTTCTGCAGTCGGTGCTGCAGGCTTCTGTTGGGGAGGTAAGGTTGTGGTTGAACTTGCAAAGCACGACTTTATCCAAGCTGCTGTTCTCTGTCATCCTTCATTTGTCATTGTGGATGATATCAAGGCTGTTAAGGTTCCTATTTCTATACTTGGAGCTGAGATTGACCATATGTCTCCACCTGAAGTCGTGAAGCAATTTGAAGAGGTTTTAACTGCGAAGTCTGAGGTTAAAAGCCATGTGAAGATATTTCCGAAAGTGGCACACGGTTGGACCGTGAGGTACAATGTTGAAGACGAAGCAGCTGTTAAGTGTGCTGAGGAGGCTCATCAAAACTTGTTGGAGTGGTTCTTGAACCATGTCAGGGGAATCAGATCATCACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

246

Amino Acids

26.42

Weight (kDa)

5.98

Isoelectric Point (pI)

36.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AccB7I CCANNNNNTGG 2 cut(s) 50, 329
AcoI YGGCCR 2 cut(s) 58, 297
AcuI CTGAAG 2 cut(s) 270, 555
AfaI GTAC 2 cut(s) 230, 635
AfiI CCNNNNNNNGG 4 cut(s) 50, 302, 329, 715
AgsI TTSAA 7 cut(s) 68, 155, 311, 404, 554, 644, 706
AhdI GACNNNNNGTC 1 cut(s) 523
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AluBI AGCT 9 cut(s) 73, 118, 158, 175, 194, 335, 431, 509, 656
AluI AGCT 9 cut(s) 73, 118, 158, 175, 194, 335, 431, 509, 656
Alw26I GTCTC 4 cut(s) 86, 139, 228, 531
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 3 cut(s) 7, 58, 297
ApeKI GCWGC 6 cut(s) 18, 191, 194, 368, 431, 653
AspS9I GGNCC 3 cut(s) 8, 293, 624
AvaII GGWCC 2 cut(s) 293, 624
BbsI GAAGAC 1 cut(s) 651
BbvCI CCTCAGC 1 cut(s) 669
BbvI GCAGC 6 cut(s) 5, 181, 203, 355, 418, 665
BccI CCATC 2 cut(s) 44, 52
BcoDI GTCTC 4 cut(s) 86, 139, 228, 531
BfmI CTRYAG 3 cut(s) 357, 369, 734
BisI GCNGC 6 cut(s) 19, 192, 195, 369, 432, 654
BlsI GCNGC 6 cut(s) 20, 193, 196, 370, 433, 655
Bme18I GGWCC 2 cut(s) 293, 624
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgT120I GGNCC 3 cut(s) 8, 293, 624
BmiI GGNNCC 3 cut(s) 55, 103, 489
BmsI GCATC 2 cut(s) 244, 304
BpiI GAAGAC 1 cut(s) 651
Bpu10I CCTNAGC 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 187
BsaI GGTCTC 2 cut(s) 86, 228
BsaXI ACNNNNNCTCC 2 cut(s) 378, 408
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 302, 329, 715
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 2 cut(s) 103, 323
BseGI GGATG 2 cut(s) 445, 472
BseLI CCNNNNNNNGG 4 cut(s) 50, 302, 329, 715
BseMII CTCAG 4 cut(s) 26, 501, 567, 660
BseNI ACTGG 2 cut(s) 103, 323
BseRI GAGGAG 1 cut(s) 686
BseXI GCAGC 6 cut(s) 5, 181, 203, 355, 418, 665
BseYI CCCAGC 1 cut(s) 197
BshFI GGCC 3 cut(s) 9, 60, 299
BsiSI CCGG 2 cut(s) 57, 296
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 4 cut(s) 50, 302, 329, 715
BsmAI GTCTC 4 cut(s) 86, 139, 228, 531
BsmBI CGTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 3 cut(s) 9, 60, 299
Bso31I GGTCTC 2 cut(s) 86, 228
Bsp143I GATC 2 cut(s) 286, 725
BspANI GGCC 3 cut(s) 9, 60, 299
BspCNI CTCAG 4 cut(s) 25, 502, 568, 661
BspLI GGNNCC 3 cut(s) 55, 103, 489
BspMAI CTGCAG 2 cut(s) 361, 373
BspTNI GGTCTC 2 cut(s) 86, 228
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 2 cut(s) 103, 323
BssAI RCCGGY 1 cut(s) 295
BssMI GATC 2 cut(s) 286, 725
Bst4CI ACNGT 3 cut(s) 620, 628, 735
Bst6I CTCTTC 1 cut(s) 549
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 120, 177, 373
BstDEI CTNAG 4 cut(s) 12, 510, 576, 669
BstF5I GGATG 2 cut(s) 445, 472
BstKTI GATC 2 cut(s) 289, 728
BstMAI GTCTC 4 cut(s) 86, 139, 228, 531
BstMBI GATC 2 cut(s) 286, 725
BstMWI GCNNNNNNNGC 3 cut(s) 15, 365, 674
BstSFI CTRYAG 3 cut(s) 357, 369, 734
BstV1I GCAGC 6 cut(s) 5, 181, 203, 355, 418, 665
BstV2I GAAGAC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 9, 60, 299
BtsCI GGATG 2 cut(s) 445, 472
BtsIMutI CAGTG 3 cut(s) 20, 96, 731
Cac8I GCNNGC 3 cut(s) 120, 177, 373
CaiI CAGNNNCTG 1 cut(s) 197
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 3 cut(s) 8, 293, 624
Csp6I GTAC 2 cut(s) 229, 634
CviAII CATG 4 cut(s) 62, 290, 590, 710
CviQI GTAC 2 cut(s) 229, 634
DdeI CTNAG 4 cut(s) 12, 510, 576, 669
DpnI GATC 2 cut(s) 288, 727
DpnII GATC 2 cut(s) 286, 725
DrdI GACNNNNNNGTC 1 cut(s) 92
DriI GACNNNNNGTC 1 cut(s) 523
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 2 cut(s) 58, 297
Eam1104I CTCTTC 1 cut(s) 549
Eam1105I GACNNNNNGTC 1 cut(s) 523
EarI CTCTTC 1 cut(s) 549
Eco31I GGTCTC 2 cut(s) 86, 228
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 2 cut(s) 293, 624
Eco57I CTGAAG 2 cut(s) 270, 555
EcoO109I RGGNCCY 1 cut(s) 8
EcoRV GATATC 1 cut(s) 472
Esp3I CGTCTC 1 cut(s) 139
FaeI CATG 4 cut(s) 65, 293, 593, 713
FaiI YATR 9 cut(s) 63, 93, 243, 291, 500, 522, 524, 591, 711
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FaqI GGGAC 1 cut(s) 200
FatI CATG 4 cut(s) 61, 289, 589, 709
FauNDI CATATG 1 cut(s) 522
Fnu4HI GCNGC 6 cut(s) 19, 192, 195, 369, 432, 654
FokI GGATG 2 cut(s) 432, 479
Fsp4HI GCNGC 6 cut(s) 19, 192, 195, 369, 432, 654
GluI GCNGC 6 cut(s) 19, 192, 195, 369, 432, 654
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 3 cut(s) 9, 60, 299
HapII CCGG 2 cut(s) 57, 296
Hin1II CATG 4 cut(s) 65, 293, 593, 713
HindIII AAGCTT 3 cut(s) 71, 116, 173
HinfI GANTC 3 cut(s) 86, 110, 720
HpaII CCGG 2 cut(s) 57, 296
Hpy188I TCNGA 4 cut(s) 139, 577, 606, 725
Hpy188III TCNNGA 3 cut(s) 83, 541, 703
HpyAV CCTTC 2 cut(s) 336, 459
HpyCH4III ACNGT 3 cut(s) 620, 628, 735
HpyCH4V TGCA 6 cut(s) 191, 245, 317, 359, 371, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 365, 674
HpyF3I CTNAG 4 cut(s) 12, 510, 576, 669
Hsp92II CATG 4 cut(s) 65, 293, 593, 713
Kzo9I GATC 2 cut(s) 286, 725
LmnI GCTCC 5 cut(s) 59, 107, 163, 332, 506
Lsp1109I GCAGC 6 cut(s) 5, 181, 203, 355, 418, 665
LweI GCATC 2 cut(s) 244, 304
MaeIII GTNAC 1 cut(s) 94
MalI GATC 2 cut(s) 288, 727
MboI GATC 2 cut(s) 286, 725
MboII GAAGA 6 cut(s) 119, 263, 323, 566, 607, 656
MluCI AATT 1 cut(s) 548
MlyI GAGTC 2 cut(s) 80, 104
MmeI TCCRAC 3 cut(s) 56, 602, 672
MseI TTAA 5 cut(s) 338, 483, 563, 582, 660
MspA1I CMGCKG 2 cut(s) 194, 656
MspI CCGG 2 cut(s) 57, 296
MwoI GCNNNNNNNGC 3 cut(s) 15, 365, 674
NdeI CATATG 1 cut(s) 522
NdeII GATC 2 cut(s) 286, 725
NlaIII CATG 4 cut(s) 65, 293, 593, 713
NlaIV GGNNCC 3 cut(s) 55, 103, 489
NmuCI GTSAC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PfeI GAWTC 1 cut(s) 720
PflMI CCANNNNNTGG 2 cut(s) 50, 329
PkrI GCNGC 6 cut(s) 20, 193, 196, 370, 433, 655
PleI GAGTC 2 cut(s) 80, 104
PpsI GAGTC 2 cut(s) 80, 104
PspFI CCCAGC 1 cut(s) 197
PspN4I GGNNCC 3 cut(s) 55, 103, 489
PspPI GGNCC 3 cut(s) 8, 293, 624
PstI CTGCAG 2 cut(s) 361, 373
PstNI CAGNNNCTG 1 cut(s) 197
PvuII CAGCTG 2 cut(s) 194, 656
RsaI GTAC 2 cut(s) 230, 635
RsaNI GTAC 2 cut(s) 229, 634
SaqAI TTAA 5 cut(s) 338, 483, 563, 582, 660
SatI GCNGC 6 cut(s) 19, 192, 195, 369, 432, 654
Sau3AI GATC 2 cut(s) 286, 725
Sau96I GGNCC 3 cut(s) 8, 293, 624
SchI GAGTC 2 cut(s) 80, 104
SfaNI GCATC 2 cut(s) 244, 304
SfcI CTRYAG 3 cut(s) 357, 369, 734
SinI GGWCC 2 cut(s) 293, 624
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 1 cut(s) 548
TaaI ACNGT 3 cut(s) 620, 628, 735
TaqI TCGA 1 cut(s) 84
TasI AATT 1 cut(s) 548
TfiI GAWTC 1 cut(s) 720
Tru1I TTAA 5 cut(s) 338, 483, 563, 582, 660
Tru9I TTAA 5 cut(s) 338, 483, 563, 582, 660
TscAI CASTG 3 cut(s) 20, 103, 738
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 6 cut(s) 18, 191, 194, 368, 431, 653
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 441
TspGWI ACGGA 2 cut(s) 246, 318
TspRI CASTG 3 cut(s) 20, 103, 738
Van91I CCANNNNNTGG 2 cut(s) 50, 329
VpaK11BI GGWCC 2 cut(s) 293, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.