Rmu_sc0003443.1_g000009

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003443.1
Physical Location & Seq
Reverse (-)
25367 .. 28087
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003443.1_g000009.1.cds

Sequence Viewer

Length: 879 bp
atgcaaatacatgctgccaaggtactccttctcccaccgtacttttccaaattggcgtctttggaatttgtggtcagccagtcccacattggtaccagttcccctcctagctcgttgtcagtagtgttgtttgtgagaaagacagaagaaataatgtcaggccgtcagtgctgcgcgaacccaccgaccctgaacccaaccagtggatccggccacgttgagaagcttggtggtctcgactcctatctcactggctctcctgactccaagcttgccattgttcttgtctccgacatttatgggtatgaggctccaaacttgaggaagctcgcagacaaagttgcagctgctggcttttttgttgtggtccctgacttcttttatggagacccgtatgtacttccagctgatggatcccatggcggtctacctacatggctgaaaggtcatggaccggagaagggatttgaagatgttaaactagttattggagctctaaaaagtaaaggcgtctctgcaataggtgctgcaggcttctctttgggagccaaggttgtagttgaacttgcaatgggtgactttatccaagctgctgttctggctcatccttcttcattcactgtggatgatatcaaggctgttaaggttccaatatctatacttggagctgagattgatcagatgtctccgcctgaagtcgtgaaacaatttgaagaggctttggctgcaaagtctgagatcaaaagtcatgtgaagatattcccaaaagtgtctcatggatggactgtgaggtatgatgtttcggacagagaagctgtgaaggccgctgaggaggctcataaagatttgttggagtggtttgtgaaccatgtcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

292

Amino Acids

31.19

Weight (kDa)

6.2

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 92
AccB7I CCANNNNNTGG 2 cut(s) 203, 410
AccI GTMKAC 1 cut(s) 427
AccII CGCG 1 cut(s) 176
AciI CCGC 3 cut(s) 423, 689, 825
AclWI GGATC 4 cut(s) 201, 214, 408, 421
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 714
AcyI GRCGYC 2 cut(s) 56, 510
AfaI GTAC 4 cut(s) 24, 41, 94, 399
AfiI CCNNNNNNNGG 3 cut(s) 203, 410, 461
AgsI TTSAA 3 cut(s) 470, 563, 713
AhlI ACTAGT 1 cut(s) 481
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 6 cut(s) 239, 292, 381, 517, 690, 777
AlwI GGATC 4 cut(s) 201, 214, 408, 421
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 3 cut(s) 160, 211, 822
ApeKI GCWGC 7 cut(s) 14, 171, 344, 347, 527, 590, 725
ApoI RAATTY 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 758
Asp718I GGTACC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 367, 452
AsuHPI GGTGA 1 cut(s) 587
AvaII GGWCC 2 cut(s) 367, 452
BaeI ACNNNNGTAYC 2 cut(s) 76, 109
BamHI GGATCC 2 cut(s) 206, 413
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 496
Bbv12I GWGCWC 1 cut(s) 496
BbvCI CCTCAGC 1 cut(s) 828
BbvI GCAGC 6 cut(s) 158, 334, 356, 514, 577, 712
BccI CCATC 2 cut(s) 404, 774
BceAI ACGGC 1 cut(s) 147
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 6 cut(s) 239, 292, 381, 517, 690, 777
BcuI ACTAGT 1 cut(s) 481
BfaI CTAG 2 cut(s) 108, 482
BfmI CTRYAG 1 cut(s) 528
BisI GCNGC 8 cut(s) 15, 172, 345, 348, 528, 591, 726, 825
BlsI GCNGC 8 cut(s) 16, 173, 346, 349, 529, 592, 727, 826
Bme18I GGWCC 2 cut(s) 367, 452
BmgT120I GGNCC 2 cut(s) 367, 452
BmiI GGNNCC 7 cut(s) 94, 208, 312, 369, 415, 547, 648
Bpu10I CCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 340
BsaHI GRCGYC 2 cut(s) 56, 510
BsaI GGTCTC 2 cut(s) 239, 381
BsaJI CCNNGG 3 cut(s) 18, 418, 549
BsaWI WCCGGW 1 cut(s) 454
BsaXI ACNNNNNCTCC 6 cut(s) 15, 45, 241, 271, 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 410, 461
Bse1I ACTGG 4 cut(s) 79, 96, 201, 256
Bse3DI GCAATG 1 cut(s) 576
BseDI CCNNGG 3 cut(s) 18, 418, 549
BseGI GGATG 3 cut(s) 604, 631, 785
BseLI CCNNNNNNNGG 3 cut(s) 203, 410, 461
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 3 cut(s) 660, 726, 819
BseNI ACTGG 4 cut(s) 79, 96, 201, 256
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 6 cut(s) 158, 334, 356, 514, 577, 712
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 3 cut(s) 162, 213, 824
BshNI GGYRCC 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 2 cut(s) 210, 455
BslFI GGGAC 2 cut(s) 67, 353
BslI CCNNNNNNNGG 3 cut(s) 203, 410, 461
BsmAI GTCTC 6 cut(s) 239, 292, 381, 517, 690, 777
BsmBI CGTCTC 1 cut(s) 517
BsmFI GGGAC 2 cut(s) 67, 353
BsnI GGCC 3 cut(s) 162, 213, 824
Bso31I GGTCTC 2 cut(s) 239, 381
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 4 cut(s) 206, 413, 676, 738
Bsp19I CCATGG 1 cut(s) 418
BspACI CCGC 3 cut(s) 423, 689, 825
BspANI GGCC 3 cut(s) 162, 213, 824
BspCNI CTCAG 3 cut(s) 661, 727, 820
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 7 cut(s) 94, 208, 312, 369, 415, 547, 648
BspMAI CTGCAG 1 cut(s) 532
BspPI GGATC 4 cut(s) 201, 214, 408, 421
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 2 cut(s) 239, 381
BsrDI GCAATG 1 cut(s) 576
BsrI ACTGG 4 cut(s) 79, 96, 201, 256
BssECI CCNNGG 3 cut(s) 18, 418, 549
BssMI GATC 4 cut(s) 206, 413, 676, 738
BssNI GRCGYC 2 cut(s) 56, 510
BssT1I CCWWGG 3 cut(s) 18, 418, 549
Bst4CI ACNGT 3 cut(s) 39, 622, 787
Bst6I CTCTTC 1 cut(s) 708
BstACI GRCGYC 2 cut(s) 56, 510
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 4 cut(s) 273, 330, 352, 532
BstDEI CTNAG 3 cut(s) 669, 735, 828
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 3 cut(s) 604, 631, 785
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 176
BstKTI GATC 4 cut(s) 209, 416, 679, 741
BstMAI GTCTC 6 cut(s) 239, 292, 381, 517, 690, 777
BstMBI GATC 4 cut(s) 206, 413, 676, 738
BstMWI GCNNNNNNNGC 6 cut(s) 168, 524, 599, 725, 821, 833
BstNSI RCATGY 1 cut(s) 14
BstSFI CTRYAG 1 cut(s) 528
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 6 cut(s) 158, 334, 356, 514, 577, 712
BstX2I RGATCY 2 cut(s) 206, 413
BstYI RGATCY 2 cut(s) 206, 413
BsuRI GGCC 3 cut(s) 162, 213, 824
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 3 cut(s) 604, 631, 785
BtsIMutI CAGTG 4 cut(s) 173, 208, 249, 618
Cac8I GCNNGC 4 cut(s) 273, 330, 352, 532
CaiI CAGNNNCTG 1 cut(s) 350
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 367, 452
CseI GACGC 2 cut(s) 45, 499
Csp6I GTAC 4 cut(s) 23, 40, 93, 398
CviAII CATG 7 cut(s) 11, 419, 435, 449, 749, 776, 869
CviQI GTAC 4 cut(s) 23, 40, 93, 398
DdeI CTNAG 3 cut(s) 669, 735, 828
DpnI GATC 4 cut(s) 208, 415, 678, 740
DpnII GATC 4 cut(s) 206, 413, 676, 738
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
EciI GGCGGA 1 cut(s) 678
Ecl136II GAGCTC 1 cut(s) 494
Eco130I CCWWGG 3 cut(s) 18, 418, 549
Eco24I GRGCYC 1 cut(s) 496
Eco31I GGTCTC 2 cut(s) 239, 381
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 2 cut(s) 367, 452
Eco53kI GAGCTC 1 cut(s) 494
Eco57I CTGAAG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 494
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 3 cut(s) 18, 418, 549
EcoT38I GRGCYC 1 cut(s) 496
ErhI CCWWGG 3 cut(s) 18, 418, 549
Esp3I CGTCTC 1 cut(s) 517
FaeI CATG 7 cut(s) 14, 422, 438, 452, 752, 779, 872
FaqI GGGAC 2 cut(s) 67, 353
FatI CATG 7 cut(s) 10, 418, 434, 448, 748, 775, 868
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 8 cut(s) 15, 172, 345, 348, 528, 591, 726, 825
FokI GGATG 3 cut(s) 591, 638, 792
FriOI GRGCYC 1 cut(s) 496
Fsp4HI GCNGC 8 cut(s) 15, 172, 345, 348, 528, 591, 726, 825
FspBI CTAG 2 cut(s) 108, 482
GlaI GCGC 1 cut(s) 175
GluI GCNGC 8 cut(s) 15, 172, 345, 348, 528, 591, 726, 825
HaeIII GGCC 3 cut(s) 162, 213, 824
HapII CCGG 2 cut(s) 210, 455
HgaI GACGC 2 cut(s) 45, 499
HhaI GCGC 1 cut(s) 176
Hin1I GRCGYC 2 cut(s) 56, 510
Hin1II CATG 7 cut(s) 14, 422, 438, 452, 752, 779, 872
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HindIII AAGCTT 2 cut(s) 224, 269
HinfI GANTC 2 cut(s) 239, 263
HpaII CCGG 2 cut(s) 210, 455
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 2 cut(s) 428, 865
Hpy188I TCNGA 4 cut(s) 292, 681, 736, 805
Hpy188III TCNNGA 3 cut(s) 236, 260, 700
Hpy8I GTNNAC 2 cut(s) 428, 865
HpyAV CCTTC 4 cut(s) 38, 454, 618, 814
HpyCH4III ACNGT 3 cut(s) 39, 622, 787
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 6 cut(s) 4, 344, 518, 530, 569, 728
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 524, 599, 725, 821, 833
HpyF3I CTNAG 3 cut(s) 669, 735, 828
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 2 cut(s) 56, 510
Hsp92II CATG 7 cut(s) 14, 422, 438, 452, 752, 779, 872
HspAI GCGC 1 cut(s) 174
KpnI GGTACC 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 4 cut(s) 206, 413, 676, 738
LmnI GCTCC 4 cut(s) 316, 491, 545, 665
Lsp1109I GCAGC 6 cut(s) 158, 334, 356, 514, 577, 712
MaeI CTAG 2 cut(s) 108, 482
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 575
MalI GATC 4 cut(s) 208, 415, 678, 740
MboI GATC 4 cut(s) 206, 413, 676, 738
MboII GAAGA 5 cut(s) 158, 482, 603, 725, 766
MflI RGATCY 2 cut(s) 206, 413
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 3 cut(s) 50, 65, 707
MlyI GAGTC 2 cut(s) 233, 257
MmeI TCCRAC 2 cut(s) 315, 831
MnlI CCTC 7 cut(s) 114, 301, 315, 709, 783, 823, 826
MroXI GAANNNNTTC 1 cut(s) 758
MseI TTAA 2 cut(s) 477, 642
MspA1I CMGCKG 3 cut(s) 347, 407, 827
MspI CCGG 2 cut(s) 210, 455
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 6 cut(s) 168, 524, 599, 725, 821, 833
NcoI CCATGG 1 cut(s) 418
NdeII GATC 4 cut(s) 206, 413, 676, 738
NlaIII CATG 7 cut(s) 14, 422, 438, 452, 752, 779, 872
NlaIV GGNNCC 7 cut(s) 94, 208, 312, 369, 415, 547, 648
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 758
PflMI CCANNNNNTGG 2 cut(s) 203, 410
PkrI GCNGC 8 cut(s) 16, 173, 346, 349, 529, 592, 727, 826
PleI GAGTC 2 cut(s) 233, 257
PpsI GAGTC 2 cut(s) 233, 257
Psp124BI GAGCTC 1 cut(s) 496
PspN4I GGNNCC 7 cut(s) 94, 208, 312, 369, 415, 547, 648
PspPI GGNCC 2 cut(s) 367, 452
PstI CTGCAG 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 350
PsuI RGATCY 2 cut(s) 206, 413
PvuII CAGCTG 2 cut(s) 347, 407
RsaI GTAC 4 cut(s) 24, 41, 94, 399
RsaNI GTAC 4 cut(s) 23, 40, 93, 398
SacI GAGCTC 1 cut(s) 496
SaqAI TTAA 2 cut(s) 477, 642
SatI GCNGC 8 cut(s) 15, 172, 345, 348, 528, 591, 726, 825
Sau3AI GATC 4 cut(s) 206, 413, 676, 738
Sau96I GGNCC 2 cut(s) 367, 452
SchI GAGTC 2 cut(s) 233, 257
SduI GDGCHC 1 cut(s) 496
SfcI CTRYAG 1 cut(s) 528
SinI GGWCC 2 cut(s) 367, 452
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SpeI ACTAGT 1 cut(s) 481
Sse9I AATT 3 cut(s) 50, 65, 707
SsiI CCGC 3 cut(s) 423, 689, 825
SspMI CTAG 2 cut(s) 108, 482
SstI GAGCTC 1 cut(s) 496
StyI CCWWGG 3 cut(s) 18, 418, 549
TaaI ACNGT 3 cut(s) 39, 622, 787
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 237
TasI AATT 3 cut(s) 50, 65, 707
TatI WGTACW 1 cut(s) 397
TauI GCSGC 1 cut(s) 827
Tru1I TTAA 2 cut(s) 477, 642
Tru9I TTAA 2 cut(s) 477, 642
TscAI CASTG 4 cut(s) 173, 208, 256, 625
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 7 cut(s) 14, 171, 344, 347, 527, 590, 725
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 1 cut(s) 603
TspRI CASTG 4 cut(s) 173, 208, 256, 625
Van91I CCANNNNNTGG 2 cut(s) 203, 410
VpaK11BI GGWCC 2 cut(s) 367, 452
XapI RAATTY 1 cut(s) 65
XceI RCATGY 1 cut(s) 14
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 427
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 2 cut(s) 108, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.