Rh6CG346200

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000177
Physical Location & Seq
Reverse (-)
53666063 .. 53668455
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG346200.1

Sequence Viewer

Length: 441 bp
ATGCTCAGAATGTTCACCATCGTATTACATGTACTCTTTGTGACTTTGTGTCTGCAACTGCAACAAGGTGTGTCTGGTCCTCAATGCTTGGAGCATCCACCGAACCTTAACGGAACCTCAGGAGCTGGATCAGTCATTAAAGTTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTCATTCCAAGCTTGCCATAATCCTCGCTTCTGACGTCTACGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACTAAGGCTGCAGTTTTGCTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGCGGTTAAGACTCCAATAGCCATATTGGTTGCTCAATTTGACAACGGCACTCCACCTGAACTCATGAAACAGTTTAAGGAGGCTTTATCTACTAATAAGCGTACCGTAGAATCAGTTCTCAATAAAGAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

146

Amino Acids

15.77

Weight (kDa)

9.3

Isoelectric Point (pI)

22.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 213
AciI CCGC 2 cut(s) 230, 308
AclWI GGATC 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 2 cut(s) 33, 409
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 1 cut(s) 154
AhdI GACNNNNNGTC 1 cut(s) 48
AluBI AGCT 3 cut(s) 125, 187, 235
AluI AGCT 3 cut(s) 125, 187, 235
AlwI GGATC 1 cut(s) 136
AlwNI CAGNNNCTG 1 cut(s) 125
AoxI GGCC 2 cut(s) 156, 169
ApeKI GCWGC 1 cut(s) 260
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 2 cut(s) 77, 170
AsuHPI GGTGA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 77
AxyI CCTNAGG 1 cut(s) 118
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 26
BceAI ACGGC 2 cut(s) 232, 367
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 77
BmeRI GACNNNNNGTC 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 77, 170
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 172
Bse21I CCTNAGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 94
BseMII CTCAG 2 cut(s) 19, 132
BseNI ACTGG 1 cut(s) 172
BseXI GCAGC 1 cut(s) 247
BshFI GGCC 2 cut(s) 158, 171
BsnI GGCC 2 cut(s) 158, 171
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 2 cut(s) 230, 308
BspANI GGCC 2 cut(s) 158, 171
BspCNI CTCAG 2 cut(s) 18, 131
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 1 cut(s) 136
BsrI ACTGG 1 cut(s) 172
BssMI GATC 1 cut(s) 128
BssNI GRCGYC 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 378, 412
BstACI GRCGYC 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 3 cut(s) 5, 118, 255
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 118
BsuRI GGCC 2 cut(s) 158, 171
BtsCI GGATG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 125
CciI TCATGA 1 cut(s) 369
Cfr13I GGNCC 2 cut(s) 77, 170
Csp6I GTAC 2 cut(s) 32, 408
CviAII CATG 2 cut(s) 29, 370
CviJI RGCY 9 cut(s) 125, 150, 158, 171, 187, 235, 260, 326, 389
CviKI_1 RGCY 9 cut(s) 125, 150, 158, 171, 187, 235, 260, 326, 389
CviQI GTAC 2 cut(s) 32, 408
DdeI CTNAG 3 cut(s) 5, 118, 255
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
DriI GACNNNNNGTC 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 48
Eco147I AGGCCT 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 118
FaeI CATG 2 cut(s) 32, 373
FaiI YATR 5 cut(s) 30, 162, 194, 329, 371
FatI CATG 2 cut(s) 28, 369
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 2 cut(s) 158, 171
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 2 cut(s) 32, 373
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 316, 416
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 15, 214
Hpy188I TCNGA 2 cut(s) 8, 208
Hpy188III TCNNGA 3 cut(s) 120, 293, 370
Hpy8I GTNNAC 2 cut(s) 15, 214
HpyAV CCTTC 3 cut(s) 148, 183, 288
HpyCH4III ACNGT 2 cut(s) 378, 412
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 3 cut(s) 55, 61, 263
HpyF3I CTNAG 3 cut(s) 5, 118, 255
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 2 cut(s) 32, 373
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 3 cut(s) 91, 122, 232
LpnPI CCDG 5 cut(s) 60, 105, 111, 153, 375
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 3 cut(s) 40, 163, 286
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MluCI AATT 1 cut(s) 341
MlyI GAGTC 1 cut(s) 310
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 5 cut(s) 90, 127, 140, 209, 379
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 5 cut(s) 108, 138, 303, 312, 381
NdeII GATC 1 cut(s) 128
NlaIII CATG 2 cut(s) 32, 373
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 2 cut(s) 40, 286
NspI RCATGY 1 cut(s) 32
PagI TCATGA 1 cut(s) 369
PceI AGGCCT 1 cut(s) 158
PciI ACATGT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PscI ACATGT 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 77, 170
PsrI GAACNNNNNNTAC 2 cut(s) 405, 437
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 125
RsaI GTAC 2 cut(s) 33, 409
RsaNI GTAC 2 cut(s) 32, 408
SaqAI TTAA 5 cut(s) 108, 138, 303, 312, 381
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 2 cut(s) 77, 170
SchI GAGTC 1 cut(s) 310
SetI ASST 8 cut(s) 70, 108, 119, 127, 189, 213, 237, 364
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 77
Sse9I AATT 1 cut(s) 341
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 2 cut(s) 230, 308
StuI AGGCCT 1 cut(s) 158
TaaI ACNGT 2 cut(s) 378, 412
TaiI ACGT 1 cut(s) 213
TasI AATT 1 cut(s) 341
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 5 cut(s) 108, 138, 303, 312, 381
Tru9I TTAA 5 cut(s) 108, 138, 303, 312, 381
TseFI GTSAC 2 cut(s) 40, 286
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 2 cut(s) 40, 286
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 77
XceI RCATGY 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 420
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.