Rmu_sc0006705.1_g000016

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006705.1
OG0000177
Physical Location & Seq
Reverse (-)
87697 .. 90331
2635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006705.1_g000016.1.cds

Sequence Viewer

Length: 837 bp
atgtcaggccctcagtgctgctcgaacccaccgaccctgaacccaaacagtggatccggccatgttcagaagcttggtggtctcgactcctatctcactggctctcctgactccaagcttgccattgttcttgcctctgacgcttttgggtatgatgctccaaacctgaggaagctcgcagataaagttgcagctgctggcttctttgttgtggtccctgacttcttttatggaaacccttatgtacctccagctgatggatcccatggcggtatacctacatggctgaagggtcatggaccggagaagggatttgaagatgttaaagtagttattgaagctctaaaaagtaaaggtgtttctgcaatcggtgctgcaggcttctgttggggagttgaacttgcaaagggtgactttatccaagctgctgttctggctcatccttcatttgtcactgtggatgatatcaaggctgttaaggttccaatatctatacttggagctgagattgatcggtcatctccgcctgaactcgtgaaacaatttgaagcggctttgactgcaaagtctgaggtaaaatatcctttcatcaaagttataacaccacgacctgacaggaaagaggcactactgtggtatccggtagttattgcaattctagagtttgaaatgactgttggttttatggaattacagatcaaaagtcacgtgaagatattcccaaaagtgtcgcatggatggactgtgaggtatgatgtttcagacaaagaagctgtgaagcccgctgaggaggctcataaagatttgttggagtggtttgtgagccatgtcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

278

Amino Acids

30.04

Weight (kDa)

6.25

Isoelectric Point (pI)

28.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AasI GACNNNNNNGTC 1 cut(s) 565
AccB7I CCANNNNNTGG 2 cut(s) 50, 257
AccI GTMKAC 1 cut(s) 274
AciI CCGC 4 cut(s) 270, 524, 551, 783
AclWI GGATC 4 cut(s) 48, 61, 255, 268
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 308
AcvI CACGTG 1 cut(s) 709
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 50, 257, 308
AgsI TTSAA 5 cut(s) 317, 338, 398, 548, 668
AjuI GAANNNNNNNTTGG 4 cut(s) 414, 446, 660, 692
AleI CACNNNNGTG 1 cut(s) 631
AluBI AGCT 9 cut(s) 73, 118, 175, 194, 254, 341, 425, 503, 773
AluI AGCT 9 cut(s) 73, 118, 175, 194, 254, 341, 425, 503, 773
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 4 cut(s) 48, 61, 255, 268
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 2 cut(s) 7, 58
ApeKI GCWGC 5 cut(s) 18, 191, 194, 374, 425
Asp700I GAANNNNTTC 1 cut(s) 716
AspS9I GGNCC 3 cut(s) 8, 214, 299
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 2 cut(s) 214, 299
AxyI CCTNAGG 1 cut(s) 167
BaeI ACNNNNGTAYC 2 cut(s) 620, 653
BamHI GGATCC 2 cut(s) 53, 260
BauI CACGAG 1 cut(s) 533
BbrPI CACGTG 1 cut(s) 709
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 5 cut(s) 5, 181, 203, 361, 412
BccI CCATC 2 cut(s) 251, 732
BciVI GTATCC 1 cut(s) 648
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 659
BfmI CTRYAG 1 cut(s) 375
BfuI GTATCC 1 cut(s) 648
BisI GCNGC 6 cut(s) 19, 192, 195, 375, 426, 552
BlsI GCNGC 6 cut(s) 20, 193, 196, 376, 427, 553
Bme18I GGWCC 2 cut(s) 214, 299
BmgT120I GGNCC 3 cut(s) 8, 214, 299
BmiI GGNNCC 4 cut(s) 55, 216, 262, 483
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 234
Bpu10I CCTNAGC 1 cut(s) 786
BsaAI YACGTR 1 cut(s) 709
BsaI GGTCTC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 2 cut(s) 301, 640
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 257, 308
Bse1I ACTGG 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 3 cut(s) 439, 466, 743
BseLI CCNNNNNNNGG 3 cut(s) 50, 257, 308
BseMII CTCAG 5 cut(s) 26, 158, 495, 561, 777
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 803
BseXI GCAGC 5 cut(s) 5, 181, 203, 361, 412
BshFI GGCC 2 cut(s) 9, 60
BsiSI CCGG 3 cut(s) 57, 302, 641
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 3 cut(s) 50, 257, 308
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 2 cut(s) 9, 60
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 4 cut(s) 53, 260, 511, 696
Bsp19I CCATGG 1 cut(s) 265
BspACI CCGC 4 cut(s) 270, 524, 551, 783
BspANI GGCC 2 cut(s) 9, 60
BspCNI CTCAG 5 cut(s) 25, 159, 496, 562, 778
BspLI GGNNCC 4 cut(s) 55, 216, 262, 483
BspMAI CTGCAG 1 cut(s) 379
BspPI GGATC 4 cut(s) 48, 61, 255, 268
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 4 cut(s) 53, 260, 511, 696
BssNAI GTATAC 1 cut(s) 275
BssSI CACGAG 1 cut(s) 533
BssT1I CCWWGG 1 cut(s) 265
Bst1107I GTATAC 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 533
Bst4CI ACNGT 5 cut(s) 50, 457, 633, 676, 745
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 709
BstC8I GCNNGC 5 cut(s) 120, 177, 199, 379, 783
BstDEI CTNAG 5 cut(s) 12, 167, 504, 570, 786
BstDSI CCRYGG 1 cut(s) 265
BstF5I GGATG 3 cut(s) 439, 466, 743
BstKTI GATC 4 cut(s) 56, 263, 514, 699
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 4 cut(s) 53, 260, 511, 696
BstMWI GCNNNNNNNGC 6 cut(s) 15, 140, 371, 434, 560, 791
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 5 cut(s) 5, 181, 203, 361, 412
BstX2I RGATCY 2 cut(s) 53, 260
BstYI RGATCY 2 cut(s) 53, 260
BstZ17I GTATAC 1 cut(s) 275
Bsu36I CCTNAGG 1 cut(s) 167
BsuI GTATCC 1 cut(s) 648
BsuRI GGCC 2 cut(s) 9, 60
BtgI CCRYGG 1 cut(s) 265
BtsCI GGATG 3 cut(s) 439, 466, 743
BtsIMutI CAGTG 4 cut(s) 20, 55, 96, 453
Cac8I GCNNGC 5 cut(s) 120, 177, 199, 379, 783
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 3 cut(s) 8, 214, 299
CseI GACGC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 245
CviAII CATG 6 cut(s) 62, 266, 282, 296, 734, 827
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 5 cut(s) 12, 167, 504, 570, 786
DpnI GATC 4 cut(s) 55, 262, 513, 698
DpnII GATC 4 cut(s) 53, 260, 511, 696
DrdI GACNNNNNNGTC 1 cut(s) 565
DseDI GACNNNNNNGTC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 58
EciI GGCGGA 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 86
Eco32I GATATC 1 cut(s) 466
Eco47I GGWCC 2 cut(s) 214, 299
Eco57I CTGAAG 1 cut(s) 308
Eco72I CACGTG 1 cut(s) 709
Eco81I CCTNAGG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 8
EcoRV GATATC 1 cut(s) 466
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 6 cut(s) 65, 269, 285, 299, 737, 830
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 1 cut(s) 200
FatI CATG 6 cut(s) 61, 265, 281, 295, 733, 826
FauI CCCGC 1 cut(s) 790
FblI GTMKAC 1 cut(s) 274
Fnu4HI GCNGC 6 cut(s) 19, 192, 195, 375, 426, 552
FokI GGATG 3 cut(s) 426, 473, 750
Fsp4HI GCNGC 6 cut(s) 19, 192, 195, 375, 426, 552
FspBI CTAG 1 cut(s) 659
GluI GCNGC 6 cut(s) 19, 192, 195, 375, 426, 552
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 2 cut(s) 9, 60
HapII CCGG 3 cut(s) 57, 302, 641
HgaI GACGC 1 cut(s) 149
Hin1II CATG 6 cut(s) 65, 269, 285, 299, 737, 830
HindIII AAGCTT 2 cut(s) 71, 116
HinfI GANTC 2 cut(s) 86, 110
HpaII CCGG 3 cut(s) 57, 302, 641
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 1 cut(s) 275
Hpy188I TCNGA 4 cut(s) 69, 139, 571, 763
Hpy188III TCNNGA 4 cut(s) 83, 107, 535, 659
Hpy8I GTNNAC 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 283, 301, 453
HpyCH4III ACNGT 5 cut(s) 50, 457, 633, 676, 745
HpyCH4IV ACGT 1 cut(s) 708
HpyCH4V TGCA 6 cut(s) 191, 365, 377, 404, 563, 653
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 140, 371, 434, 560, 791
HpyF3I CTNAG 5 cut(s) 12, 167, 504, 570, 786
HpySE526I ACGT 1 cut(s) 708
Hsp92II CATG 6 cut(s) 65, 269, 285, 299, 737, 830
Kzo9I GATC 4 cut(s) 53, 260, 511, 696
LmnI GCTCC 2 cut(s) 163, 500
Lsp1109I GCAGC 5 cut(s) 5, 181, 203, 361, 412
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 659
MaeII ACGT 1 cut(s) 708
MaeIII GTNAC 3 cut(s) 410, 451, 704
MalI GATC 4 cut(s) 55, 262, 513, 698
MboI GATC 4 cut(s) 53, 260, 511, 696
MboII GAAGA 2 cut(s) 329, 724
MflI RGATCY 2 cut(s) 53, 260
MluCI AATT 3 cut(s) 542, 654, 689
MlyI GAGTC 2 cut(s) 80, 104
MmeI TCCRAC 1 cut(s) 789
MnlI CCTC 9 cut(s) 21, 145, 162, 258, 565, 616, 741, 781, 784
MroXI GAANNNNTTC 1 cut(s) 716
MseI TTAA 2 cut(s) 324, 477
MslI CAYNNNNRTG 1 cut(s) 631
MspA1I CMGCKG 3 cut(s) 194, 254, 785
MspI CCGG 3 cut(s) 57, 302, 641
MwoI GCNNNNNNNGC 6 cut(s) 15, 140, 371, 434, 560, 791
NcoI CCATGG 1 cut(s) 265
NdeII GATC 4 cut(s) 53, 260, 511, 696
NlaIII CATG 6 cut(s) 65, 269, 285, 299, 737, 830
NlaIV GGNNCC 4 cut(s) 55, 216, 262, 483
NmuCI GTSAC 3 cut(s) 410, 451, 704
OliI CACNNNNGTG 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 716
PflMI CCANNNNNTGG 2 cut(s) 50, 257
PkrI GCNGC 6 cut(s) 20, 193, 196, 376, 427, 553
PleI GAGTC 2 cut(s) 80, 104
PmaCI CACGTG 1 cut(s) 709
PmlI CACGTG 1 cut(s) 709
PpsI GAGTC 2 cut(s) 80, 104
Ppu21I YACGTR 1 cut(s) 709
PsiI TTATAA 1 cut(s) 599
PspCI CACGTG 1 cut(s) 709
PspN4I GGNNCC 4 cut(s) 55, 216, 262, 483
PspPI GGNCC 3 cut(s) 8, 214, 299
PstI CTGCAG 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 53, 260
PvuII CAGCTG 2 cut(s) 194, 254
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 631
SaqAI TTAA 2 cut(s) 324, 477
SatI GCNGC 6 cut(s) 19, 192, 195, 375, 426, 552
Sau3AI GATC 4 cut(s) 53, 260, 511, 696
Sau96I GGNCC 3 cut(s) 8, 214, 299
SchI GAGTC 2 cut(s) 80, 104
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 2 cut(s) 214, 299
SmiMI CAYNNNNRTG 1 cut(s) 631
Sse9I AATT 3 cut(s) 542, 654, 689
SsiI CCGC 4 cut(s) 270, 524, 551, 783
SspMI CTAG 1 cut(s) 659
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 5 cut(s) 50, 457, 633, 676, 745
TaiI ACGT 1 cut(s) 711
TaqI TCGA 2 cut(s) 23, 84
TaqII GACCGA 1 cut(s) 504
TasI AATT 3 cut(s) 542, 654, 689
TauI GCSGC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 324, 477
Tru9I TTAA 2 cut(s) 324, 477
TscAI CASTG 4 cut(s) 20, 55, 103, 460
TseFI GTSAC 3 cut(s) 410, 451, 704
TseI GCWGC 5 cut(s) 18, 191, 194, 374, 425
Tsp45I GTSAC 3 cut(s) 410, 451, 704
TspDTI ATGAA 2 cut(s) 435, 577
TspRI CASTG 4 cut(s) 20, 55, 103, 460
Van91I CCANNNNNTGG 2 cut(s) 50, 257
VpaK11BI GGWCC 2 cut(s) 214, 299
XbaI TCTAGA 1 cut(s) 658
XmiI GTMKAC 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 716
XspI CTAG 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.