Rh2AG210000

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000177
Physical Location & Seq
Reverse (-)
21389153 .. 21405461
16309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG210000.1

Sequence Viewer

Length: 456 bp
ATGTTAGTGATACTTCGCATCGCCTTTGATGGCGACGAAGGCATGGGGGTCTGTGATGGTGGTTGGATTGATGGCGACGGTCTTTCTTGGGTGGGATCTATTTCTCTTGCTGTCAAGGCAAGTGGCGGTGAGGCAGTGGCAGTGCTGAGCGTGCTTGGAATCTGGCCAGCAACGCAAGCACTGGGACGGGCTGATGGTATTGTTGCTTCCGGTGGCCTCTGTTACAGCAGTGGCAGCAAGACTTGCAGTCATCTTCTCCGGCTTTCCCCATCCAAGCTTGCTTTGTTTTCTGAGTTGCTCCAAAACGGAAGGAAACTTGCGGATAAAGTTGCTGCAGCTGGATTTTTCGTGGTGGTTCCCGATTTCTTTTCTGGTGACCCTGTGAATCTTGATAATCCTCAATTCGACCGAGAGTCCTGGTTTAAAGCTCATAGCAAGGTTAGTGACTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

151

Amino Acids

15.79

Weight (kDa)

4.98

Isoelectric Point (pI)

22.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 126, 320
AclWI GGATC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 164
AhdI GACNNNNNGTC 2 cut(s) 246, 412
AjnI CCWGG 1 cut(s) 416
AluBI AGCT 3 cut(s) 277, 338, 428
AluI AGCT 3 cut(s) 277, 338, 428
AlwI GGATC 1 cut(s) 103
AoxI GGCC 2 cut(s) 164, 214
ApeKI GCWGC 3 cut(s) 234, 332, 335
AsuHPI GGTGA 2 cut(s) 140, 386
BalI TGGCCA 1 cut(s) 166
BarI GAAGNNNNNNTAC 2 cut(s) 190, 222
BbvI GCAGC 3 cut(s) 246, 319, 347
BccI CCATC 5 cut(s) 23, 50, 65, 188, 277
BciT130I CCWGG 1 cut(s) 418
BfmI CTRYAG 1 cut(s) 333
BisI GCNGC 3 cut(s) 235, 333, 336
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 3 cut(s) 236, 334, 337
Bme1390I CCNGG 1 cut(s) 418
BmeRI GACNNNNNGTC 2 cut(s) 246, 412
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 418
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 27
BmuI ACTGGG 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 418
BseGI GGATG 1 cut(s) 269
BseMII CTCAG 2 cut(s) 137, 282
BseNI ACTGG 1 cut(s) 186
BseXI GCAGC 3 cut(s) 246, 319, 347
Bsh1285I CGRYCG 1 cut(s) 409
BshFI GGCC 2 cut(s) 166, 216
BsiEI CGRYCG 1 cut(s) 409
BsiSI CCGG 2 cut(s) 210, 259
BslFI GGGAC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 2 cut(s) 166, 216
Bsp143I GATC 1 cut(s) 95
Bsp1720I GCTNAGC 1 cut(s) 146
BspACI CCGC 2 cut(s) 126, 320
BspANI GGCC 2 cut(s) 166, 216
BspCNI CTCAG 2 cut(s) 138, 283
BspLI GGNNCC 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 337
BspPI GGATC 1 cut(s) 103
BsrI ACTGG 1 cut(s) 186
BssMI GATC 1 cut(s) 95
Bst2UI CCWGG 1 cut(s) 418
Bst4CI ACNGT 1 cut(s) 80
BstAPI GCANNNNNTGC 1 cut(s) 243
BstC8I GCNNGC 4 cut(s) 152, 168, 177, 279
BstDEI CTNAG 2 cut(s) 146, 291
BstEII GGTNACC 1 cut(s) 374
BstF5I GGATG 1 cut(s) 269
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstMCI CGRYCG 1 cut(s) 409
BstMWI GCNNNNNNNGC 7 cut(s) 39, 116, 151, 172, 176, 234, 243
BstNI CCWGG 1 cut(s) 418
BstPI GGTNACC 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 416
BstSFI CTRYAG 1 cut(s) 333
BstV1I GCAGC 3 cut(s) 246, 319, 347
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 2 cut(s) 166, 216
BtgZI GCGATG 1 cut(s) 4
BtsCI GGATG 1 cut(s) 269
BtsI GCAGTG 3 cut(s) 141, 147, 235
BtsIMutI CAGTG 4 cut(s) 141, 147, 179, 235
Cac8I GCNNGC 4 cut(s) 152, 168, 177, 279
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 1 cut(s) 43
CviJI RGCY 7 cut(s) 166, 191, 216, 262, 277, 338, 428
CviKI_1 RGCY 7 cut(s) 166, 191, 216, 262, 277, 338, 428
DdeI CTNAG 2 cut(s) 146, 291
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
DraI TTTAAA 1 cut(s) 424
DriI GACNNNNNGTC 2 cut(s) 246, 412
EaeI YGGCCR 1 cut(s) 164
Eam1105I GACNNNNNGTC 2 cut(s) 246, 412
Eco91I GGTNACC 1 cut(s) 374
EcoO65I GGTNACC 1 cut(s) 374
EcoRII CCWGG 1 cut(s) 416
FaeI CATG 1 cut(s) 46
FaiI YATR 2 cut(s) 44, 432
FaqI GGGAC 1 cut(s) 198
FatI CATG 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 235, 333, 336
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 3 cut(s) 235, 333, 336
GluI GCNGC 3 cut(s) 235, 333, 336
HaeIII GGCC 2 cut(s) 166, 216
HapII CCGG 2 cut(s) 210, 259
Hin1II CATG 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 159, 385, 413
HpaII CCGG 2 cut(s) 210, 259
HphI GGTGA 2 cut(s) 140, 386
Hpy188I TCNGA 1 cut(s) 292
Hpy188III TCNNGA 3 cut(s) 359, 389, 453
Hpy99I CGWCG 2 cut(s) 38, 80
HpyAV CCTTC 2 cut(s) 32, 303
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 246, 335
HpyF10VI GCNNNNNNNGC 7 cut(s) 39, 116, 151, 172, 176, 234, 243
HpyF3I CTNAG 2 cut(s) 146, 291
Hsp92II CATG 1 cut(s) 46
Kzo9I GATC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 303
Lsp1109I GCAGC 3 cut(s) 246, 319, 347
LweI GCATC 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 221, 374, 443
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 1 cut(s) 245
MflI RGATCY 1 cut(s) 95
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 1 cut(s) 401
MluNI TGGCCA 1 cut(s) 166
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 3 cut(s) 124, 227, 408
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
MseI TTAA 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 166
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 2 cut(s) 210, 259
MspR9I CCNGG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 418
MwoI GCNNNNNNNGC 7 cut(s) 39, 116, 151, 172, 176, 234, 243
NdeII GATC 1 cut(s) 95
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 374, 443
PfeI GAWTC 2 cut(s) 159, 385
PkrI GCNGC 3 cut(s) 236, 334, 337
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 416
PspEI GGTNACC 1 cut(s) 374
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 357
PstI CTGCAG 1 cut(s) 337
PsuI RGATCY 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 338
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 235, 333, 336
Sau3AI GATC 1 cut(s) 95
SchI GAGTC 1 cut(s) 422
ScrFI CCNGG 1 cut(s) 418
SetI ASST 4 cut(s) 279, 340, 430, 441
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 333
Sse9I AATT 1 cut(s) 401
SsiI CCGC 2 cut(s) 126, 320
StyD4I CCNGG 1 cut(s) 416
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 405
TaqII GACCGA 1 cut(s) 423
TasI AATT 1 cut(s) 401
TfiI GAWTC 2 cut(s) 159, 385
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 4 cut(s) 141, 147, 186, 235
TseFI GTSAC 2 cut(s) 374, 443
TseI GCWGC 3 cut(s) 234, 332, 335
Tsp45I GTSAC 2 cut(s) 374, 443
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 4 cut(s) 141, 147, 186, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.