Rh1AG139300

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000177
Physical Location & Seq
Reverse (-)
26384617 .. 26391403
6787 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG139300.1

Sequence Viewer

Length: 699 bp
ATGTTCACCATAGTATTACATTTAGTCTGTGTGATTTTGTGTCTACAATTGCAACAAGGTGTGTCTGGTCATCAGTGCTTGGAGCATCCACCCAACCTAAACGCAACCTCAGGAGCTGGAACAGTCACTGAAGTTGGAGGCTTGAAGGCCTATGTGACTGGCCCTTCCAATTCCGAGCTTGCCATAATCCTTGCTTCTGACATCTATGGATTTGAAGCACCAAACTTAAGGAAAATTGCAGACAAAGTTGCTAGCAATGCTGGATTCAATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATACAATCCTAACAACACTCAGAGGAATATGACAGACTGGCTAAGGGACCATGGAACAGACAAAGGTTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAAAAAAGGGGTATCCGGGATAGGAGCTGCAGGGTTCTGTTGGGGTGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACCGAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTCGATGATATTGAAGAGATTAAGACTCCAATAGCCATATTGGCTGCTCAATTTGACAACGGCACTGCACCTGAACTCATGAAACAGTTTAAGGAGATTTTATCCACTAATAAGGAGTCGGTTGACATTTTGATAGCTGTGTTGTGGCCAGTCGTTTTGTATGTAGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

232

Amino Acids

25.08

Weight (kDa)

5.24

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 48 - 218 2.2e-24 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 43
AciI CCGC 1 cut(s) 464
AclWI GGATC 1 cut(s) 293
AcoI YGGCCR 1 cut(s) 671
AcuI CTGAAG 1 cut(s) 150
AflII CTTAAG 1 cut(s) 226
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 5 cut(s) 145, 215, 268, 374, 539
AluBI AGCT 5 cut(s) 116, 178, 431, 469, 662
AluI AGCT 5 cut(s) 116, 178, 431, 469, 662
AlwI GGATC 1 cut(s) 293
AlwNI CAGNNNCTG 2 cut(s) 116, 128
AoxI GGCC 3 cut(s) 147, 160, 671
ApeKI GCWGC 4 cut(s) 395, 431, 494, 569
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AspS9I GGNCC 2 cut(s) 161, 349
AsuC2I CCSGG 1 cut(s) 421
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 109
BalI TGGCCA 1 cut(s) 673
BbvI GCAGC 4 cut(s) 382, 418, 481, 556
BceAI ACGGC 1 cut(s) 601
BciVI GTATCC 1 cut(s) 427
BcnI CCSGG 1 cut(s) 421
BfaI CTAG 2 cut(s) 252, 697
BfmI CTRYAG 2 cut(s) 432, 495
BfrI CTTAAG 1 cut(s) 226
BfuI GTATCC 1 cut(s) 427
BglI GCCNNNNNGGC 1 cut(s) 566
BisI GCNGC 4 cut(s) 396, 432, 495, 570
BlsI GCNGC 4 cut(s) 397, 433, 496, 571
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 2 cut(s) 161, 349
BmiI GGNNCC 2 cut(s) 279, 350
BmrFI CCNGG 1 cut(s) 421
BmsI GCATC 2 cut(s) 94, 367
BmtI GCTAGC 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 421
BsaJI CCNNGG 2 cut(s) 352, 489
Bse1I ACTGG 3 cut(s) 163, 344, 674
Bse21I CCTNAGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 352, 489
BseGI GGATG 1 cut(s) 85
BseMI GCAATG 1 cut(s) 262
BseMII CTCAG 2 cut(s) 123, 335
BseNI ACTGG 3 cut(s) 163, 344, 674
BseXI GCAGC 4 cut(s) 382, 418, 481, 556
BsgI GTGCAG 1 cut(s) 576
BshFI GGCC 3 cut(s) 149, 162, 673
BsiSI CCGG 1 cut(s) 420
BslFI GGGAC 1 cut(s) 362
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 3 cut(s) 149, 162, 673
Bsp143I GATC 1 cut(s) 298
Bsp19I CCATGG 1 cut(s) 352
BspACI CCGC 1 cut(s) 464
BspANI GGCC 3 cut(s) 149, 162, 673
BspCNI CTCAG 2 cut(s) 122, 334
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 2 cut(s) 279, 350
BspMAI CTGCAG 2 cut(s) 436, 499
BspOI GCTAGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 293
BspTI CTTAAG 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 262
BsrI ACTGG 3 cut(s) 163, 344, 674
BssECI CCNNGG 2 cut(s) 352, 489
BssMI GATC 1 cut(s) 298
BssT1I CCWWGG 1 cut(s) 352
Bst4CI ACNGT 2 cut(s) 124, 612
Bst6I CTCTTC 1 cut(s) 534
BstAFI CTTAAG 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 180, 253
BstDEI CTNAG 3 cut(s) 109, 321, 344
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 257, 566
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 2 cut(s) 432, 495
BstV1I GCAGC 4 cut(s) 382, 418, 481, 556
BstX2I RGATCY 1 cut(s) 298
BstYI RGATCY 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 427
BsuRI GGCC 3 cut(s) 149, 162, 673
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 3 cut(s) 80, 126, 588
Cac8I GCNNGC 2 cut(s) 180, 253
CaiI CAGNNNCTG 2 cut(s) 116, 128
CciI TCATGA 1 cut(s) 603
Cfr13I GGNCC 2 cut(s) 161, 349
CviAII CATG 2 cut(s) 353, 604
DdeI CTNAG 3 cut(s) 109, 321, 344
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 671
Eam1104I CTCTTC 1 cut(s) 534
EarI CTCTTC 1 cut(s) 534
Eco130I CCWWGG 1 cut(s) 352
Eco147I AGGCCT 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 150
Eco81I CCTNAGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 352
FaeI CATG 2 cut(s) 356, 607
FaqI GGGAC 1 cut(s) 362
FatI CATG 2 cut(s) 352, 603
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 396, 432, 495, 570
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 4 cut(s) 396, 432, 495, 570
FspBI CTAG 2 cut(s) 252, 697
GluI GCNGC 4 cut(s) 396, 432, 495, 570
HaeIII GGCC 3 cut(s) 149, 162, 673
HapII CCGG 1 cut(s) 420
Hin1II CATG 2 cut(s) 356, 607
HincII GTYRAC 1 cut(s) 649
HindII GTYRAC 1 cut(s) 649
HinfI GANTC 3 cut(s) 264, 550, 641
HpaII CCGG 1 cut(s) 420
Hpy166II GTNNAC 3 cut(s) 6, 44, 649
Hpy188I TCNGA 3 cut(s) 175, 199, 324
Hpy188III TCNNGA 4 cut(s) 111, 281, 527, 604
Hpy8I GTNNAC 3 cut(s) 6, 44, 649
HpyAV CCTTC 3 cut(s) 139, 174, 522
HpyCH4III ACNGT 2 cut(s) 124, 612
HpyCH4IV ACGT 1 cut(s) 385
HpyCH4V TGCA 5 cut(s) 52, 239, 434, 497, 593
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 566
HpyF3I CTNAG 3 cut(s) 109, 321, 344
HpySE526I ACGT 1 cut(s) 385
Hsp92II CATG 2 cut(s) 356, 607
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 4 cut(s) 82, 113, 428, 466
Lsp1109I GCAGC 4 cut(s) 382, 418, 481, 556
LweI GCATC 2 cut(s) 94, 367
MaeI CTAG 2 cut(s) 252, 697
MaeII ACGT 1 cut(s) 385
MaeIII GTNAC 4 cut(s) 124, 154, 504, 520
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 2 cut(s) 386, 551
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 1 cut(s) 298
MlsI TGGCCA 1 cut(s) 673
MluCI AATT 5 cut(s) 47, 169, 234, 390, 575
MluNI TGGCCA 1 cut(s) 673
MlyI GAGTC 2 cut(s) 544, 650
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 118, 131, 318, 484
Mox20I TGGCCA 1 cut(s) 673
MscI TGGCCA 1 cut(s) 673
MseI TTAA 3 cut(s) 227, 546, 615
Msp20I TGGCCA 1 cut(s) 673
MspCI CTTAAG 1 cut(s) 226
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 421
MunI CAATTG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 257, 566
NciI CCSGG 1 cut(s) 421
NcoI CCATGG 1 cut(s) 352
NdeII GATC 1 cut(s) 298
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 356, 607
NlaIV GGNNCC 2 cut(s) 279, 350
NmuCI GTSAC 3 cut(s) 124, 154, 520
PagI TCATGA 1 cut(s) 603
PceI AGGCCT 1 cut(s) 149
PfeI GAWTC 1 cut(s) 264
PfoI TCCNGGA 1 cut(s) 419
PkrI GCNGC 4 cut(s) 397, 433, 496, 571
PleI GAGTC 2 cut(s) 544, 649
PpsI GAGTC 2 cut(s) 544, 649
PspN4I GGNNCC 2 cut(s) 279, 350
PspPI GGNCC 2 cut(s) 161, 349
PstI CTGCAG 2 cut(s) 436, 499
PstNI CAGNNNCTG 2 cut(s) 116, 128
PsuI RGATCY 1 cut(s) 298
SaqAI TTAA 3 cut(s) 227, 546, 615
SatI GCNGC 4 cut(s) 396, 432, 495, 570
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 2 cut(s) 161, 349
SchI GAGTC 2 cut(s) 544, 650
ScrFI CCNGG 1 cut(s) 421
SfaNI GCATC 2 cut(s) 94, 367
SfcI CTRYAG 2 cut(s) 432, 495
SinI GGWCC 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 5 cut(s) 47, 169, 234, 390, 575
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 1 cut(s) 464
SspMI CTAG 2 cut(s) 252, 697
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 124, 612
TaiI ACGT 1 cut(s) 388
TaqI TCGA 1 cut(s) 528
TasI AATT 5 cut(s) 47, 169, 234, 390, 575
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 3 cut(s) 227, 546, 615
Tru9I TTAA 3 cut(s) 227, 546, 615
TscAI CASTG 3 cut(s) 80, 133, 595
TseFI GTSAC 3 cut(s) 124, 154, 520
TseI GCWGC 4 cut(s) 395, 431, 494, 569
Tsp45I GTSAC 3 cut(s) 124, 154, 520
TspDTI ATGAA 1 cut(s) 620
TspRI CASTG 3 cut(s) 80, 133, 595
Vha464I CTTAAG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 349
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 2 cut(s) 252, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.