FvH4_4g14330

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000177
Physical Location & Seq
Reverse (-)
17938899 .. 17941465
2567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14330.t1

Sequence Viewer

Length: 426 bp
ATGTCGACTTTTGGAAAAAGGAAACTTGCGGACAGAGTTGTTGCAGCTGGATTTTTCGTGGTGGTTCCCGATTTCTTTTACGGCGACCTTGTGAATCTGGATAATCCTCAATTTGACCTAGAGTCTTGGTTTAAAGCTCATAGAAAGCTAGAGCGTGGCTCATGGATGGACAATGAGGGTACAATGCTGCACATGAATCTGCAGCCAAGAGTGCCGGAGCAAGAGGTCGACATCTCCATCATCATCTCCAAAACTCGAGCTAGGACACACAAGATCTCATTAAAGGGCTCAAGTACTCTGAGATCACAGCCGGTGAACGGTTCAGAAGAGTTCTCTTATTTTCATTATACCGAGGACAGAACAGACGTCGATACTAATCTTGAAAGAGAACTTACTGATGAAATCATCCGACTCAAGTGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

142

Amino Acids

16.36

Weight (kDa)

5.8

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 369
AccI GTMKAC 2 cut(s) 5, 228
AciI CCGC 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 2 cut(s) 181, 295
AfiI CCNNNNNNNGG 1 cut(s) 317
AgsI TTSAA 1 cut(s) 383
AhdI GACNNNNNGTC 1 cut(s) 121
AluBI AGCT 4 cut(s) 47, 137, 148, 260
AluI AGCT 4 cut(s) 47, 137, 148, 260
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 44, 187, 202
AsuHPI GGTGA 1 cut(s) 325
AvaI CYCGRG 1 cut(s) 255
BanII GRGCYC 1 cut(s) 290
BbvI GCAGC 3 cut(s) 56, 174, 214
BccI CCATC 2 cut(s) 160, 245
BceAI ACGGC 1 cut(s) 97
BfaI CTAG 3 cut(s) 119, 149, 261
BfmI CTRYAG 1 cut(s) 200
BglII AGATCT 1 cut(s) 273
BisI GCNGC 3 cut(s) 45, 188, 203
BlsI GCNGC 3 cut(s) 46, 189, 204
BmcAI AGTACT 1 cut(s) 295
BmeRI GACNNNNNGTC 1 cut(s) 121
BmeT110I CYCGRG 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpuEI CTTGAG 2 cut(s) 274, 398
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 366
BsaJI CCNNGG 1 cut(s) 351
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 2 cut(s) 171, 405
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 317
BseMII CTCAG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 56, 174, 214
BsgI GTGCAG 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 215, 311
BslI CCNNNNNNNGG 1 cut(s) 317
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 2 cut(s) 273, 302
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 2 cut(s) 273, 302
BssNI GRCGYC 1 cut(s) 366
Bst4CI ACNGT 1 cut(s) 320
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 299
BstF5I GGATG 2 cut(s) 171, 405
BstKTI GATC 2 cut(s) 276, 305
BstMBI GATC 2 cut(s) 273, 302
BstMWI GCNNNNNNNGC 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 56, 174, 214
BstX2I RGATCY 1 cut(s) 273
BstYI RGATCY 1 cut(s) 273
BtsCI GGATG 2 cut(s) 171, 405
Cfr10I RCCGGY 1 cut(s) 310
Csp6I GTAC 2 cut(s) 180, 294
CviAII CATG 2 cut(s) 162, 193
CviJI RGCY 8 cut(s) 47, 137, 148, 159, 205, 260, 288, 310
CviKI_1 RGCY 8 cut(s) 47, 137, 148, 159, 205, 260, 288, 310
CviQI GTAC 2 cut(s) 180, 294
DdeI CTNAG 1 cut(s) 299
DpnI GATC 2 cut(s) 275, 304
DpnII GATC 2 cut(s) 273, 302
DraI TTTAAA 1 cut(s) 133
DriI GACNNNNNGTC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 321
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 2 cut(s) 165, 196
FaiI YATR 5 cut(s) 141, 163, 194, 348, 424
FatI CATG 2 cut(s) 161, 192
FblI GTMKAC 2 cut(s) 5, 228
Fnu4HI GCNGC 3 cut(s) 45, 188, 203
FokI GGATG 2 cut(s) 178, 392
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 3 cut(s) 45, 188, 203
FspBI CTAG 3 cut(s) 119, 149, 261
GluI GCNGC 3 cut(s) 45, 188, 203
HapII CCGG 2 cut(s) 215, 311
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 2 cut(s) 165, 196
HincII GTYRAC 2 cut(s) 6, 229
HindII GTYRAC 2 cut(s) 6, 229
HinfI GANTC 4 cut(s) 94, 122, 196, 411
HpaII CCGG 2 cut(s) 215, 311
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 3 cut(s) 6, 229, 316
Hpy188I TCNGA 3 cut(s) 300, 325, 410
Hpy188III TCNNGA 3 cut(s) 68, 98, 380
Hpy8I GTNNAC 3 cut(s) 6, 229, 316
Hpy99I CGWCG 1 cut(s) 371
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 44, 190, 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 366
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 2 cut(s) 165, 196
Kzo9I GATC 2 cut(s) 273, 302
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 4 cut(s) 33, 83, 228, 324
Lsp1109I GCAGC 3 cut(s) 56, 174, 214
MaeI CTAG 3 cut(s) 119, 149, 261
MaeII ACGT 1 cut(s) 366
MalI GATC 2 cut(s) 275, 304
MboI GATC 2 cut(s) 273, 302
MboII GAAGA 1 cut(s) 338
MflI RGATCY 1 cut(s) 273
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 1 cut(s) 110
MlyI GAGTC 2 cut(s) 131, 405
MnlI CCTC 4 cut(s) 117, 169, 217, 346
MseI TTAA 2 cut(s) 132, 281
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 2 cut(s) 215, 311
MwoI GCNNNNNNNGC 1 cut(s) 211
NdeII GATC 2 cut(s) 273, 302
NlaIII CATG 2 cut(s) 165, 196
NlaIV GGNNCC 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 255
PfeI GAWTC 2 cut(s) 94, 196
PkrI GCNGC 3 cut(s) 46, 189, 204
PleI GAGTC 2 cut(s) 130, 405
PpsI GAGTC 2 cut(s) 130, 405
PspN4I GGNNCC 1 cut(s) 66
PspXI VCTCGAGB 1 cut(s) 255
PstI CTGCAG 1 cut(s) 204
PsuI RGATCY 1 cut(s) 273
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 181, 295
RsaNI GTAC 2 cut(s) 180, 294
SalI GTCGAC 2 cut(s) 4, 227
SaqAI TTAA 2 cut(s) 132, 281
SatI GCNGC 3 cut(s) 45, 188, 203
Sau3AI GATC 2 cut(s) 273, 302
ScaI AGTACT 1 cut(s) 295
SchI GAGTC 2 cut(s) 131, 405
SduI GDGCHC 1 cut(s) 290
SetI ASST 8 cut(s) 49, 90, 120, 139, 150, 228, 262, 369
SfcI CTRYAG 1 cut(s) 200
Sfr274I CTCGAG 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 255
SmlI CTYRAG 3 cut(s) 255, 289, 413
SmoI CTYRAG 3 cut(s) 255, 289, 413
Sse9I AATT 1 cut(s) 110
SsiI CCGC 1 cut(s) 29
SspMI CTAG 3 cut(s) 119, 149, 261
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 369
TaqI TCGA 4 cut(s) 5, 228, 256, 369
TasI AATT 1 cut(s) 110
TatI WGTACW 1 cut(s) 293
TfiI GAWTC 2 cut(s) 94, 196
Tru1I TTAA 2 cut(s) 132, 281
Tru9I TTAA 2 cut(s) 132, 281
TseI GCWGC 3 cut(s) 44, 187, 202
TspDTI ATGAA 3 cut(s) 209, 332, 414
XhoI CTCGAG 1 cut(s) 255
XmiI GTMKAC 2 cut(s) 5, 228
XspI CTAG 3 cut(s) 119, 149, 261
ZraI GACGTC 1 cut(s) 367
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.