Rh6AG333100

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000177
Physical Location & Seq
Reverse (-)
53425033 .. 53426879
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG333100.1

Sequence Viewer

Length: 447 bp
ATGTCTGGTCCTCAGTGCTGCGAGAACCCACCGAGCCTTAGCTCAACCTGCGGAGCTGGATCAGTCACTGAAATTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTGATTCCAAGCTTGCCATTCTCCTGGTTTCTGATATCCATGGATTTGAAGCACCAAAGTTCAGGGAGCTTGCAGACAAAACTGCTACCGTTTCTGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATTCAATCCTGACAAAACTGAGAGGCTTGTGTGGCTACAGTCTCATGGAACAGACAAAGGATTTGAAGATGCTAAACTTGTAATTGGTGCTCTAAGGAACAAAGGGATTTCCACAATAGGAGCTGCAGGATTCTGTTGGGGAGGTGAGAATCTCTTGCTCACACTTTCATGTGTACAAGATATAGCTCTAAAGTCCATGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

148

Amino Acids

15.62

Weight (kDa)

5.26

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 28 - 131 4.7e-11 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 214
AciI CCGC 1 cut(s) 51
AclWI GGATC 2 cut(s) 67, 233
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 4 cut(s) 85, 155, 247, 308
AjnI CCWGG 1 cut(s) 129
AluBI AGCT 6 cut(s) 42, 56, 118, 175, 365, 428
AluI AGCT 6 cut(s) 42, 56, 118, 175, 365, 428
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 288
AlwI GGATC 2 cut(s) 67, 233
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 87, 100
ApeKI GCWGC 2 cut(s) 18, 365
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 2 cut(s) 8, 101
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 5, 352
BciT130I CCWGG 1 cut(s) 131
BcoDI GTCTC 1 cut(s) 288
BfmI CTRYAG 2 cut(s) 278, 366
BfuAI ACCTGC 1 cut(s) 56
BisI GCNGC 2 cut(s) 19, 366
BlsI GCNGC 2 cut(s) 20, 367
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 8, 101
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 301
Bpu10I CCTNAGC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 26, 252
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 2 cut(s) 5, 352
BshFI GGCC 2 cut(s) 89, 102
BsiHKAI GWGCWC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 288
BsnI GGCC 2 cut(s) 89, 102
Bsp1286I GDGCHC 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 415
Bsp143I GATC 2 cut(s) 59, 238
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 89, 102
BspCNI CTCAG 2 cut(s) 25, 253
BspLI GGNNCC 1 cut(s) 219
BspMAI CTGCAG 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 67, 233
BsrGI TGTACA 1 cut(s) 415
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 2 cut(s) 59, 238
BssT1I CCWWGG 1 cut(s) 145
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 2 cut(s) 196, 282
BstAUI TGTACA 1 cut(s) 415
BstC8I GCNNGC 2 cut(s) 120, 177
BstDEI CTNAG 4 cut(s) 12, 38, 261, 335
BstDSI CCRYGG 1 cut(s) 145
BstKTI GATC 2 cut(s) 62, 241
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 2 cut(s) 59, 238
BstMWI GCNNNNNNNGC 2 cut(s) 48, 274
BstNI CCWGG 1 cut(s) 131
BstSCI CCNGG 1 cut(s) 129
BstSFI CTRYAG 2 cut(s) 278, 366
BstV1I GCAGC 2 cut(s) 5, 352
BstX2I RGATCY 1 cut(s) 238
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 89, 102
BtgI CCRYGG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 20, 66
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 120, 177
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 8, 101
Csp6I GTAC 1 cut(s) 416
CviAII CATG 5 cut(s) 146, 209, 287, 411, 439
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 4 cut(s) 12, 38, 261, 335
DpnI GATC 2 cut(s) 61, 240
DpnII GATC 2 cut(s) 59, 238
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 89
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 5 cut(s) 149, 212, 290, 414, 442
FaiI YATR 8 cut(s) 93, 147, 210, 234, 288, 412, 425, 440
FatI CATG 5 cut(s) 145, 208, 286, 410, 438
Fnu4HI GCNGC 2 cut(s) 19, 366
Fsp4HI GCNGC 2 cut(s) 19, 366
GluI GCNGC 2 cut(s) 19, 366
HaeIII GGCC 2 cut(s) 89, 102
Hin1II CATG 5 cut(s) 149, 212, 290, 414, 442
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 4 cut(s) 110, 204, 372, 391
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 109, 139
Hpy188III TCNNGA 4 cut(s) 201, 221, 251, 444
Hpy8I GTNNAC 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 79, 114
HpyCH4III ACNGT 2 cut(s) 196, 282
HpyCH4V TGCA 2 cut(s) 179, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 274
HpyF3I CTNAG 4 cut(s) 12, 38, 261, 335
Hsp92II CATG 5 cut(s) 149, 212, 290, 414, 442
Kzo9I GATC 2 cut(s) 59, 238
LmnI GCTCC 3 cut(s) 53, 172, 362
Lsp1109I GCAGC 2 cut(s) 5, 352
LweI GCATC 1 cut(s) 301
MaeIII GTNAC 2 cut(s) 64, 94
MalI GATC 2 cut(s) 61, 240
MboI GATC 2 cut(s) 59, 238
MboII GAAGA 1 cut(s) 320
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 2 cut(s) 72, 324
MnlI CCTC 4 cut(s) 21, 71, 258, 377
MslI CAYNNNNRTG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 131
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 48, 274
NcoI CCATGG 1 cut(s) 145
NdeII GATC 2 cut(s) 59, 238
NlaIII CATG 5 cut(s) 149, 212, 290, 414, 442
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 64
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 4 cut(s) 110, 204, 372, 391
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 2 cut(s) 20, 367
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 8, 101
PstI CTGCAG 1 cut(s) 370
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 238
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
RseI CAYNNNNRTG 1 cut(s) 409
SatI GCNGC 2 cut(s) 19, 366
Sau3AI GATC 2 cut(s) 59, 238
Sau96I GGNCC 2 cut(s) 8, 101
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 1 cut(s) 334
SetI ASST 8 cut(s) 44, 50, 58, 120, 177, 367, 388, 430
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 2 cut(s) 278, 366
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 409
Sse9I AATT 2 cut(s) 72, 324
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 1 cut(s) 51
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 196, 282
TasI AATT 2 cut(s) 72, 324
TatI WGTACW 1 cut(s) 415
TfiI GAWTC 4 cut(s) 110, 204, 372, 391
TscAI CASTG 2 cut(s) 20, 73
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 2 cut(s) 18, 365
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 2 cut(s) 20, 73
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.