Prupe.1G149600_v2.0.a1

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000177
Physical Location & Seq
Reverse (-)
11738720 .. 11742428
3709 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G149600.1

Sequence Viewer

Length: 726 bp
ATGTCAGGCCCTCAGTGCTGCTCGAACCCACCAACACTGGACCCATCCGGCGGCTCCGGCCATGTTGAGAAGTTCGGTGGTCTGGACACCTATGTCACTGGCTCCCCTGACTCCAAGCTTGCTATTCTTCTCGCCTCTGACATTTTTGGATATGATGCTCCCAACTTAAGGAAGCTGGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTTACGGAGACCCTTTTGTACCTGGAGATGATGGATCCTATGCCAATCTACCTACTTGGTTAAAAGATCATGGACCGGACAAGGCATTCGAAGAATCAAAGCCAGTACTTGAAGTTTTAAAAAGTAAAGGTGTTTCTGCAGTTGGTGCTGCAGGATTCTGTTATGGGGCCAAGGTTGTTGTTGAGCTTTCAAAGCATGACTTTATCCAAGCTGCTGTTCTGTGTCATCCTTCATTTGTCACTCTGGATGATATCAAGGCGGTTAAGGTTCCCATTTCAATACTTGGAGCTGAGATTGATAAGATGTCTCCACCTGAAGTCGTGAAACAATTTGAAGAAGCCTTAACTGCAAAATCTGAGATTGAATGCCATGTGAAGATCTTCCCGAAAGTGGCACACGGGTGGACTGTGAGGTACAATGTTGAAGATGAAGCAGCTGTTAAGGCTGCTGAAGAGGCTCATCAAGACTTGTTGGAGTGGTTCTTGAACCATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

242

Amino Acids

25.95

Weight (kDa)

5.05

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AciI CCGC 2 cut(s) 51, 485
AclWI GGATC 2 cut(s) 255, 268
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 2 cut(s) 561, 696
AfaI GTAC 3 cut(s) 246, 333, 641
AfiI CCNNNNNNNGG 3 cut(s) 50, 168, 616
AflII CTTAAG 1 cut(s) 166
AgsI TTSAA 7 cut(s) 338, 417, 504, 560, 590, 650, 712
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AleI CACNNNNGTG 1 cut(s) 625
AluBI AGCT 7 cut(s) 118, 175, 194, 412, 437, 515, 662
AluI AGCT 7 cut(s) 118, 175, 194, 412, 437, 515, 662
Alw26I GTCTC 2 cut(s) 228, 537
AlwI GGATC 2 cut(s) 255, 268
AlwNI CAGNNNCTG 1 cut(s) 197
AoxI GGCC 3 cut(s) 7, 58, 393
ApeKI GCWGC 7 cut(s) 18, 191, 194, 374, 437, 659, 671
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp700I GAANNNNTTC 1 cut(s) 605
AspS9I GGNCC 5 cut(s) 8, 40, 214, 299, 393
AsuII TTCGAA 1 cut(s) 315
AvaII GGWCC 3 cut(s) 40, 214, 299
BamHI GGATCC 1 cut(s) 260
BbvI GCAGC 7 cut(s) 5, 181, 203, 361, 424, 658, 671
BccI CCATC 2 cut(s) 52, 251
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 2 cut(s) 228, 537
BfmI CTRYAG 2 cut(s) 363, 375
BfrI CTTAAG 1 cut(s) 166
BglII AGATCT 1 cut(s) 603
BisI GCNGC 8 cut(s) 19, 52, 192, 195, 375, 438, 660, 672
BlsI GCNGC 8 cut(s) 20, 53, 193, 196, 376, 439, 661, 673
BmcAI AGTACT 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 3 cut(s) 40, 214, 299
BmgT120I GGNCC 5 cut(s) 8, 40, 214, 299, 393
BmiI GGNNCC 7 cut(s) 42, 55, 103, 216, 262, 394, 495
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 168, 616
Bse1I ACTGG 3 cut(s) 42, 103, 329
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 3 cut(s) 44, 451, 478
BseLI CCNNNNNNNGG 3 cut(s) 50, 168, 616
BseMII CTCAG 3 cut(s) 26, 507, 573
BseNI ACTGG 3 cut(s) 42, 103, 329
BseXI GCAGC 7 cut(s) 5, 181, 203, 361, 424, 658, 671
BshFI GGCC 3 cut(s) 9, 60, 395
BsiSI CCGG 3 cut(s) 48, 57, 302
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 3 cut(s) 50, 168, 616
BsmAI GTCTC 2 cut(s) 228, 537
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 311, 596
BsnI GGCC 3 cut(s) 9, 60, 395
Bso31I GGTCTC 1 cut(s) 228
Bsp119I TTCGAA 1 cut(s) 315
Bsp143I GATC 3 cut(s) 260, 292, 603
BspACI CCGC 2 cut(s) 51, 485
BspANI GGCC 3 cut(s) 9, 60, 395
BspCNI CTCAG 3 cut(s) 25, 508, 574
BspLI GGNNCC 7 cut(s) 42, 55, 103, 216, 262, 394, 495
BspMAI CTGCAG 2 cut(s) 367, 379
BspPI GGATC 2 cut(s) 255, 268
BspT104I TTCGAA 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 228
BsrI ACTGG 3 cut(s) 42, 103, 329
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 3 cut(s) 260, 292, 603
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 634
Bst6I CTCTTC 1 cut(s) 672
BstAFI CTTAAG 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 315
BstC8I GCNNGC 3 cut(s) 120, 177, 199
BstDEI CTNAG 3 cut(s) 12, 516, 582
BstF5I GGATG 3 cut(s) 44, 451, 478
BstKTI GATC 3 cut(s) 263, 295, 606
BstMAI GTCTC 2 cut(s) 228, 537
BstMBI GATC 3 cut(s) 260, 292, 603
BstMWI GCNNNNNNNGC 7 cut(s) 15, 57, 371, 418, 572, 668, 680
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 2 cut(s) 363, 375
BstV1I GCAGC 7 cut(s) 5, 181, 203, 361, 424, 658, 671
BstX2I RGATCY 2 cut(s) 260, 603
BstYI RGATCY 2 cut(s) 260, 603
BsuRI GGCC 3 cut(s) 9, 60, 395
BtsCI GGATG 3 cut(s) 44, 451, 478
BtsIMutI CAGTG 3 cut(s) 20, 35, 96
Cac8I GCNNGC 3 cut(s) 120, 177, 199
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 5 cut(s) 8, 40, 214, 299, 393
Csp6I GTAC 3 cut(s) 245, 332, 640
CviAII CATG 5 cut(s) 62, 296, 422, 596, 716
CviQI GTAC 3 cut(s) 245, 332, 640
DdeI CTNAG 3 cut(s) 12, 516, 582
DpnI GATC 3 cut(s) 262, 294, 605
DpnII GATC 3 cut(s) 260, 292, 603
DraI TTTAAA 1 cut(s) 345
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 228
Eco32I GATATC 1 cut(s) 478
Eco47I GGWCC 3 cut(s) 40, 214, 299
Eco57I CTGAAG 2 cut(s) 561, 696
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 247
EcoRV GATATC 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 5 cut(s) 65, 299, 425, 599, 719
FaiI YATR 9 cut(s) 63, 93, 153, 267, 297, 390, 423, 597, 717
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 1 cut(s) 200
FatI CATG 5 cut(s) 61, 295, 421, 595, 715
Fnu4HI GCNGC 8 cut(s) 19, 52, 192, 195, 375, 438, 660, 672
FokI GGATG 3 cut(s) 31, 438, 485
Fsp4HI GCNGC 8 cut(s) 19, 52, 192, 195, 375, 438, 660, 672
GluI GCNGC 8 cut(s) 19, 52, 192, 195, 375, 438, 660, 672
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 3 cut(s) 9, 60, 395
HapII CCGG 3 cut(s) 48, 57, 302
Hin1II CATG 5 cut(s) 65, 299, 425, 599, 719
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 3 cut(s) 110, 320, 381
HpaII CCGG 3 cut(s) 48, 57, 302
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 2 cut(s) 139, 583
Hpy188III TCNNGA 6 cut(s) 83, 470, 547, 610, 689, 709
Hpy8I GTNNAC 1 cut(s) 630
HpyAV CCTTC 1 cut(s) 465
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4V TGCA 4 cut(s) 191, 365, 377, 575
HpyF10VI GCNNNNNNNGC 7 cut(s) 15, 57, 371, 418, 572, 668, 680
HpyF3I CTNAG 3 cut(s) 12, 516, 582
Hsp92II CATG 5 cut(s) 65, 299, 425, 599, 719
Kzo9I GATC 3 cut(s) 260, 292, 603
LmnI GCTCC 4 cut(s) 59, 107, 163, 512
Lsp1109I GCAGC 7 cut(s) 5, 181, 203, 361, 424, 658, 671
LweI GCATC 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 94, 463
MalI GATC 3 cut(s) 262, 294, 605
MboI GATC 3 cut(s) 260, 292, 603
MboII GAAGA 7 cut(s) 119, 329, 572, 598, 613, 662, 689
MflI RGATCY 2 cut(s) 260, 603
MluCI AATT 1 cut(s) 554
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 678
MnlI CCTC 4 cut(s) 21, 145, 630, 673
MroXI GAANNNNTTC 1 cut(s) 605
MseI TTAA 6 cut(s) 167, 287, 344, 489, 569, 666
MslI CAYNNNNRTG 1 cut(s) 625
MspA1I CMGCKG 2 cut(s) 194, 662
MspCI CTTAAG 1 cut(s) 166
MspI CCGG 3 cut(s) 48, 57, 302
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 2 cut(s) 311, 596
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 7 cut(s) 15, 57, 371, 418, 572, 668, 680
NdeII GATC 3 cut(s) 260, 292, 603
NlaIII CATG 5 cut(s) 65, 299, 425, 599, 719
NlaIV GGNNCC 7 cut(s) 42, 55, 103, 216, 262, 394, 495
NmuCI GTSAC 2 cut(s) 94, 463
NspV TTCGAA 1 cut(s) 315
OliI CACNNNNGTG 1 cut(s) 625
PctI GAATGC 2 cut(s) 311, 596
PdmI GAANNNNTTC 1 cut(s) 605
PfeI GAWTC 2 cut(s) 320, 381
PkrI GCNGC 8 cut(s) 20, 53, 193, 196, 376, 439, 661, 673
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 7 cut(s) 42, 55, 103, 216, 262, 394, 495
PspPI GGNCC 5 cut(s) 8, 40, 214, 299, 393
PstI CTGCAG 2 cut(s) 367, 379
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 260, 603
PvuII CAGCTG 2 cut(s) 194, 662
RsaI GTAC 3 cut(s) 246, 333, 641
RsaNI GTAC 3 cut(s) 245, 332, 640
RseI CAYNNNNRTG 1 cut(s) 625
SaqAI TTAA 6 cut(s) 167, 287, 344, 489, 569, 666
SatI GCNGC 8 cut(s) 19, 52, 192, 195, 375, 438, 660, 672
Sau3AI GATC 3 cut(s) 260, 292, 603
Sau96I GGNCC 5 cut(s) 8, 40, 214, 299, 393
ScaI AGTACT 1 cut(s) 333
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 249
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 2 cut(s) 363, 375
SfuI TTCGAA 1 cut(s) 315
SinI GGWCC 3 cut(s) 40, 214, 299
SmiMI CAYNNNNRTG 1 cut(s) 625
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 1 cut(s) 554
SsiI CCGC 2 cut(s) 51, 485
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 1 cut(s) 634
TaqI TCGA 2 cut(s) 23, 315
TasI AATT 1 cut(s) 554
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 54
TfiI GAWTC 2 cut(s) 320, 381
Tru1I TTAA 6 cut(s) 167, 287, 344, 489, 569, 666
Tru9I TTAA 6 cut(s) 167, 287, 344, 489, 569, 666
TscAI CASTG 3 cut(s) 20, 42, 103
TseFI GTSAC 2 cut(s) 94, 463
TseI GCWGC 7 cut(s) 18, 191, 194, 374, 437, 659, 671
Tsp45I GTSAC 2 cut(s) 94, 463
TspDTI ATGAA 2 cut(s) 447, 669
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 3 cut(s) 20, 42, 103
Vha464I CTTAAG 1 cut(s) 166
VpaK11BI GGWCC 3 cut(s) 40, 214, 299
XmnI GAANNNNTTC 1 cut(s) 605
ZrmI AGTACT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.