RchiOBHm_Chr4g0418601

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000177
Physical Location & Seq
Forward (+)
44037548 .. 44038599
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38858

Sequence Viewer

Length: 426 bp
ATGGAGAAGGGATTTGAAGATGTTAAACTAGTTATTGGAGCTCTAAAAAGTAAAGGCGTCTCTGCAATCGGTACTGCAGGCTTCTGTTGGGGAGCCAAGGTTGTAGTTGAACTTGCAAAGGGTGACTTTATCCAAGCTGCTGTTCTGGCTCATCCTTCTTTAGTCACTGTGGATGATATCAAGGCTGTTAAGGTTCCAATATCTATACTTGGAGCTGAGATTGATCAGGTGTCTCCGCCTGAAGTCGTGAAACAATTTGAAGAGGCTTTGGCTGCAAAGTCTGAGATCAAAAGTCATGTGAAGATATTCCCAAAAGTGTCGCATGGATGGACTGTGAGGTATGATGTTTCAGACAAAGAAGCTGTGAAGCCCGCTGAGGAGGCTCATAATGATTTGTTGGAGTGGTTTGTCAGCCATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

141

Amino Acids

15.24

Weight (kDa)

5.94

Isoelectric Point (pI)

19.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 7 - 138 9.9e-19 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 236, 372
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 73
AgsI TTSAA 3 cut(s) 17, 110, 260
AhlI ACTAGT 1 cut(s) 28
AjuI GAANNNNNNNTTGG 2 cut(s) 126, 158
AluBI AGCT 4 cut(s) 41, 137, 215, 362
AluI AGCT 4 cut(s) 41, 137, 215, 362
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 2 cut(s) 64, 237
ApeKI GCWGC 2 cut(s) 137, 272
Asp700I GAANNNNTTC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 134
BanII GRGCYC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 43
BbvCI CCTCAGC 1 cut(s) 375
BbvI GCAGC 2 cut(s) 124, 259
BccI CCATC 1 cut(s) 321
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 64, 237
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 2 cut(s) 138, 273
BlsI GCNGC 2 cut(s) 139, 274
BmiI GGNNCC 2 cut(s) 94, 195
Bpu10I CCTNAGC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 3 cut(s) 151, 178, 332
BseMII CTCAG 3 cut(s) 207, 273, 366
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 124, 259
BsiHKAI GWGCWC 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 64, 237
BsmBI CGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 223, 285
BspACI CCGC 2 cut(s) 236, 372
BspCNI CTCAG 3 cut(s) 208, 274, 367
BspLI GGNNCC 2 cut(s) 94, 195
BspMAI CTGCAG 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 2 cut(s) 223, 285
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 169, 334
Bst6I CTCTTC 1 cut(s) 255
BstACI GRCGYC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 79, 372
BstDEI CTNAG 3 cut(s) 216, 282, 375
BstF5I GGATG 3 cut(s) 151, 178, 332
BstKTI GATC 2 cut(s) 226, 288
BstMAI GTCTC 2 cut(s) 64, 237
BstMBI GATC 2 cut(s) 223, 285
BstMWI GCNNNNNNNGC 3 cut(s) 146, 272, 380
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 124, 259
BtsCI GGATG 3 cut(s) 151, 178, 332
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 79, 372
CseI GACGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 296, 323, 416
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 3 cut(s) 216, 282, 375
DpnI GATC 2 cut(s) 225, 287
DpnII GATC 2 cut(s) 223, 285
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 1 cut(s) 225
Ecl136II GAGCTC 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 96
Eco24I GRGCYC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 41
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 3 cut(s) 299, 326, 419
FaiI YATR 6 cut(s) 206, 297, 324, 342, 387, 417
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 3 cut(s) 295, 322, 415
FauI CCCGC 1 cut(s) 379
FbaI TGATCA 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 138, 273
FokI GGATG 3 cut(s) 138, 185, 339
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 138, 273
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 138, 273
HgaI GACGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 3 cut(s) 299, 326, 419
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 283, 352
Hpy188III TCNNGA 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 169, 334
HpyCH4V TGCA 4 cut(s) 65, 77, 116, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 272, 380
HpyF3I CTNAG 3 cut(s) 216, 282, 375
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 3 cut(s) 299, 326, 419
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 223, 285
LmnI GCTCC 3 cut(s) 38, 92, 212
LpnPI CCDG 4 cut(s) 63, 131, 212, 252
Lsp1109I GCAGC 2 cut(s) 124, 259
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 122, 163
MalI GATC 2 cut(s) 225, 287
MboI GATC 2 cut(s) 223, 285
MboII GAAGA 3 cut(s) 29, 272, 313
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 1 cut(s) 254
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 256, 330, 370, 373
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 2 cut(s) 24, 189
MspA1I CMGCKG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 146, 272, 380
NdeII GATC 2 cut(s) 223, 285
NlaIII CATG 3 cut(s) 299, 326, 419
NlaIV GGNNCC 2 cut(s) 94, 195
NmuCI GTSAC 2 cut(s) 122, 163
PdmI GAANNNNTTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 139, 274
Psp124BI GAGCTC 1 cut(s) 43
PspN4I GGNNCC 2 cut(s) 94, 195
PstI CTGCAG 1 cut(s) 79
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SacI GAGCTC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 24, 189
SatI GCNGC 2 cut(s) 138, 273
Sau3AI GATC 2 cut(s) 223, 285
SduI GDGCHC 1 cut(s) 43
SetI ASST 8 cut(s) 43, 102, 139, 195, 217, 231, 341, 364
SfcI CTRYAG 1 cut(s) 75
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 1 cut(s) 254
SsiI CCGC 2 cut(s) 236, 372
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 43
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 169, 334
TasI AATT 1 cut(s) 254
Tru1I TTAA 2 cut(s) 24, 189
Tru9I TTAA 2 cut(s) 24, 189
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 2 cut(s) 122, 163
TseI GCWGC 2 cut(s) 137, 272
Tsp45I GTSAC 2 cut(s) 122, 163
TspRI CASTG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 305
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.