Rh4DG215000

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000177
Physical Location & Seq
Forward (+)
41366133 .. 41407777
41645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG215000.1

Sequence Viewer

Length: 381 bp
ATGTCAACTTCTGCAGCTTGCTTTGAGAAACCACCACCACCAAGCTCAACATACGGACAAGGAACTTTCCTAGAATTTGGGGGCCTGAAGACTTACGTTACTGACTCAACTGAATCTAAGCTTAGAGTCCTTCTAGTCTCCGATGTTTTTGGGTTTGTAGTGGCAAAACTTGTAAAATCTGATGACATTAAGGCTGCTGTGATATTGCATCCTGGCCGGTTAGCTGATGAAGATATACATGCTGTTAAGGTTCCAATATCTATACTTGGAGCTGAGATTGATCAGATGTCTCCGCCTGAAGTCGTGAAACAATTTGAAGAGGCTTTGGCTGCAAAGTCTGAGTTAAAATCACCCACTTCCCCGCTTCCTCAAGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

126

Amino Acids

13.54

Weight (kDa)

4.94

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 293, 362
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 2 cut(s) 107, 318
AgsI TTSAA 1 cut(s) 317
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 5 cut(s) 17, 45, 121, 224, 272
AluI AGCT 5 cut(s) 17, 45, 121, 224, 272
Alw26I GTCTC 2 cut(s) 142, 294
AoxI GGCC 2 cut(s) 82, 214
ApeKI GCWGC 3 cut(s) 14, 194, 329
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 342
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 26, 181, 316
BciT130I CCWGG 1 cut(s) 213
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 142, 294
BfaI CTAG 2 cut(s) 71, 134
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 3 cut(s) 15, 195, 330
BlsI GCNGC 3 cut(s) 16, 196, 331
Bme1390I CCNGG 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 83, 252
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 95
BpuEI CTTGAG 1 cut(s) 354
Bse118I RCCGGY 1 cut(s) 216
BseBI CCWGG 1 cut(s) 213
BseGI GGATG 1 cut(s) 208
BseMII CTCAG 2 cut(s) 264, 330
BseXI GCAGC 3 cut(s) 26, 181, 316
BshFI GGCC 2 cut(s) 84, 216
BsiSI CCGG 1 cut(s) 217
BsmAI GTCTC 2 cut(s) 142, 294
BsnI GGCC 2 cut(s) 84, 216
Bsp143I GATC 1 cut(s) 280
BspACI CCGC 2 cut(s) 293, 362
BspANI GGCC 2 cut(s) 84, 216
BspCNI CTCAG 2 cut(s) 265, 331
BspLI GGNNCC 2 cut(s) 83, 252
BspMAI CTGCAG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 216
BssMI GATC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 4 cut(s) 117, 122, 273, 339
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 2 cut(s) 142, 294
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 3 cut(s) 26, 181, 316
BstV2I GAAGAC 1 cut(s) 95
BsuRI GGCC 2 cut(s) 84, 216
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 82
CviAII CATG 1 cut(s) 239
DdeI CTNAG 4 cut(s) 117, 122, 273, 339
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EciI GGCGGA 1 cut(s) 282
Eco57I CTGAAG 2 cut(s) 107, 318
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 211
FaeI CATG 1 cut(s) 242
FaiI YATR 4 cut(s) 52, 236, 240, 263
FatI CATG 1 cut(s) 238
FauI CCCGC 1 cut(s) 369
FbaI TGATCA 1 cut(s) 280
Fnu4HI GCNGC 3 cut(s) 15, 195, 330
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 15, 195, 330
FspBI CTAG 2 cut(s) 71, 134
GluI GCNGC 3 cut(s) 15, 195, 330
HaeIII GGCC 2 cut(s) 84, 216
HapII CCGG 1 cut(s) 217
Hin1II CATG 1 cut(s) 242
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 3 cut(s) 104, 113, 126
HpaII CCGG 1 cut(s) 217
HphI GGTGA 1 cut(s) 342
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 142, 181, 285, 340
Hpy188III TCNNGA 2 cut(s) 304, 371
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 3 cut(s) 14, 208, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
HpyF3I CTNAG 4 cut(s) 117, 122, 273, 339
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 1 cut(s) 280
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 5 cut(s) 98, 198, 225, 230, 309
Lsp1109I GCAGC 3 cut(s) 26, 181, 316
LweI GCATC 1 cut(s) 217
MaeI CTAG 2 cut(s) 71, 134
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 3 cut(s) 100, 242, 329
MluCI AATT 2 cut(s) 74, 311
MlyI GAGTC 2 cut(s) 98, 135
MnlI CCTC 2 cut(s) 313, 378
MseI TTAA 3 cut(s) 189, 246, 344
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 242
NlaIV GGNNCC 2 cut(s) 83, 252
NspI RCATGY 1 cut(s) 242
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 3 cut(s) 16, 196, 331
PleI GAGTC 2 cut(s) 98, 134
PpsI GAGTC 2 cut(s) 98, 134
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 2 cut(s) 83, 252
PspPI GGNCC 1 cut(s) 82
PstI CTGCAG 1 cut(s) 16
SaqAI TTAA 3 cut(s) 189, 246, 344
SatI GCNGC 3 cut(s) 15, 195, 330
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 98, 135
ScrFI CCNGG 1 cut(s) 213
SetI ASST 7 cut(s) 19, 47, 99, 123, 226, 252, 274
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 2 cut(s) 74, 311
SsiI CCGC 2 cut(s) 293, 362
SspMI CTAG 2 cut(s) 71, 134
StyD4I CCNGG 1 cut(s) 211
TaiI ACGT 1 cut(s) 99
TasI AATT 2 cut(s) 74, 311
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 3 cut(s) 189, 246, 344
Tru9I TTAA 3 cut(s) 189, 246, 344
TseI GCWGC 3 cut(s) 14, 194, 329
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 1 cut(s) 69
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 242
XspI CTAG 2 cut(s) 71, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.