RchiOBHm_Chr6g0291611

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000177
Physical Location & Seq
Reverse (-)
54678147 .. 54680201
2055 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26165

Sequence Viewer

Length: 654 bp
ATGTTCACCATCGTATTACATGTACTCTTTGTGACTTTGTGTCTGCAACTGCAACAAGGTGTGTCTGGTCCTCAATGCTTGGAGCACCCACCGAACCTTAACGGAACCTCAGGAGCTGGATCAGTCATTAAAGTTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTCATTCCAAGCTTGCCATAATCCTCGCTTCTGACATCTACGATAAAGTTGCTAGCACTGCTGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGAGCCATACAATCCTAACAACACCCAGAGGAATTTCACAGGCTGGCTGAAGGACCATGGAACAGACAAAGGTTTTGAAGATACTAAACGTTTAATTGCTGCTCTAAAGAACAAAGGGGTATCCAAGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGGTATTACACTAAGGCTGCAGTTTTGTTACACCCTTACAATGTCACTCTTGATGATATTAAAGCGGTTAAGACTCCAATAGCCATATTGGTTGCTCAATTTGACAACCTCACTCCACCCGAACTCACGAAACAGTTTAAGGAAGCTTTATCCACTAATAAGGTAAGCATCTCCCAACTTCGAATGGTCAAATGTTCACTCTCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

217

Amino Acids

23.38

Weight (kDa)

9.2

Isoelectric Point (pI)

18.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 67 - 204 1.3e-19 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 241
AciI CCGC 3 cut(s) 417, 431, 509
AclI AACGTT 1 cut(s) 352
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 1 cut(s) 332
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 241
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 145, 341
AhdI GACNNNNNGTC 1 cut(s) 39
AluBI AGCT 5 cut(s) 116, 178, 398, 436, 590
AluI AGCT 5 cut(s) 116, 178, 398, 436, 590
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 147, 160
ApeKI GCWGC 3 cut(s) 362, 398, 461
ApoI RAATTY 1 cut(s) 295
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AspS9I GGNCC 3 cut(s) 68, 161, 316
AsuII TTCGAA 1 cut(s) 625
AsuNHI GCTAGC 1 cut(s) 218
AvaII GGWCC 2 cut(s) 68, 316
AxyI CCTNAGG 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 349, 385, 448
BccI CCATC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BciVI GTATCC 1 cut(s) 394
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 399, 462
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 4 cut(s) 363, 399, 418, 462
BlsI GCNGC 4 cut(s) 364, 400, 419, 463
Bme18I GGWCC 2 cut(s) 68, 316
BmeRI GACNNNNNGTC 1 cut(s) 39
BmgT120I GGNCC 3 cut(s) 68, 161, 316
BmiI GGNNCC 2 cut(s) 106, 246
BmsI GCATC 1 cut(s) 621
BmtI GCTAGC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 625
BsaJI CCNNGG 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 163
Bse21I CCTNAGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 163
BseXI GCAGC 3 cut(s) 349, 385, 448
BshFI GGCC 2 cut(s) 149, 162
BsiHKAI GWGCWC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 241
BsnI GGCC 2 cut(s) 149, 162
Bsp119I TTCGAA 1 cut(s) 625
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 319
BspACI CCGC 3 cut(s) 417, 431, 509
BspANI GGCC 2 cut(s) 149, 162
BspCNI CTCAG 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 106, 246
BspMAI CTGCAG 2 cut(s) 403, 466
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 1 cut(s) 127
BspT104I TTCGAA 1 cut(s) 625
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 319
Bst4CI ACNGT 1 cut(s) 579
BstBI TTCGAA 1 cut(s) 625
BstC8I GCNNGC 3 cut(s) 180, 220, 308
BstDEI CTNAG 2 cut(s) 109, 456
BstDSI CCRYGG 1 cut(s) 319
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 23
BstSFI CTRYAG 2 cut(s) 399, 462
BstV1I GCAGC 3 cut(s) 349, 385, 448
Bsu36I CCTNAGG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 2 cut(s) 149, 162
BtgI CCRYGG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 3 cut(s) 180, 220, 308
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 3 cut(s) 68, 161, 316
Csp6I GTAC 1 cut(s) 23
CviAII CATG 4 cut(s) 20, 236, 320, 651
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 2 cut(s) 109, 456
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
DriI GACNNNNNGTC 1 cut(s) 39
Eam1105I GACNNNNNGTC 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 319
Eco147I AGGCCT 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 68, 316
Eco57I CTGAAG 1 cut(s) 332
Eco81I CCTNAGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 4 cut(s) 23, 239, 323, 654
FaiI YATR 9 cut(s) 21, 153, 185, 237, 261, 271, 321, 530, 652
FatI CATG 4 cut(s) 19, 235, 319, 650
Fnu4HI GCNGC 4 cut(s) 363, 399, 418, 462
Fsp4HI GCNGC 4 cut(s) 363, 399, 418, 462
FspBI CTAG 1 cut(s) 219
GluI GCNGC 4 cut(s) 363, 399, 418, 462
HaeIII GGCC 2 cut(s) 149, 162
Hin1II CATG 4 cut(s) 23, 239, 323, 654
HindIII AAGCTT 2 cut(s) 176, 588
HinfI GANTC 2 cut(s) 231, 517
Hpy166II GTNNAC 2 cut(s) 6, 641
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 4 cut(s) 111, 248, 494, 571
Hpy8I GTNNAC 2 cut(s) 6, 641
HpyAV CCTTC 3 cut(s) 139, 174, 307
HpyCH4III ACNGT 1 cut(s) 579
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 5 cut(s) 46, 52, 401, 464, 650
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 109, 456
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 4 cut(s) 23, 239, 323, 654
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 4 cut(s) 82, 113, 395, 433
Lsp1109I GCAGC 3 cut(s) 349, 385, 448
LweI GCATC 1 cut(s) 621
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 4 cut(s) 31, 154, 471, 487
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 3 cut(s) 295, 357, 542
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 6 cut(s) 81, 118, 131, 200, 285, 563
MseI TTAA 6 cut(s) 99, 129, 356, 504, 513, 582
MwoI GCNNNNNNNGC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 319
NdeII GATC 1 cut(s) 119
NheI GCTAGC 1 cut(s) 218
NlaIII CATG 4 cut(s) 23, 239, 323, 654
NlaIV GGNNCC 2 cut(s) 106, 246
NmuCI GTSAC 2 cut(s) 31, 487
NspI RCATGY 1 cut(s) 23
NspV TTCGAA 1 cut(s) 625
PceI AGGCCT 1 cut(s) 149
PciI ACATGT 1 cut(s) 19
PfeI GAWTC 1 cut(s) 231
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 4 cut(s) 364, 400, 419, 463
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PscI ACATGT 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 106, 246
PspPI GGNCC 3 cut(s) 68, 161, 316
PstI CTGCAG 2 cut(s) 403, 466
PstNI CAGNNNCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 6 cut(s) 99, 129, 356, 504, 513, 582
SatI GCNGC 4 cut(s) 363, 399, 418, 462
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 3 cut(s) 68, 161, 316
SchI GAGTC 1 cut(s) 511
SduI GDGCHC 1 cut(s) 87
SfaNI GCATC 1 cut(s) 621
SfcI CTRYAG 2 cut(s) 399, 462
SfuI TTCGAA 1 cut(s) 625
SinI GGWCC 2 cut(s) 68, 316
Sse9I AATT 3 cut(s) 295, 357, 542
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 3 cut(s) 417, 431, 509
SspMI CTAG 1 cut(s) 219
StuI AGGCCT 1 cut(s) 149
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 579
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 625
TasI AATT 3 cut(s) 295, 357, 542
TatI WGTACW 1 cut(s) 22
TauI GCSGC 1 cut(s) 420
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 6 cut(s) 99, 129, 356, 504, 513, 582
Tru9I TTAA 6 cut(s) 99, 129, 356, 504, 513, 582
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 2 cut(s) 31, 487
TseI GCWGC 3 cut(s) 362, 398, 461
Tsp45I GTSAC 2 cut(s) 31, 487
TspGWI ACGGA 1 cut(s) 117
TspRI CASTG 1 cut(s) 229
Van91I CCANNNNNTGG 1 cut(s) 241
VpaK11BI GGWCC 2 cut(s) 68, 316
XapI RAATTY 1 cut(s) 295
XceI RCATGY 1 cut(s) 23
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.