Rorug04G0154600

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000177
Physical Location & Seq
Forward (+)
27053554 .. 27059051
5498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0154600.1

Sequence Viewer

Length: 921 bp
ATGGTTTCTTCTAAGATGGCTTCAATCTTTTTACTGGTCCGTGAATTTCAGGCCTTAAAGGGCACTCTAGTTCGGCATGGATTTACCTTTCAATCTGAAACAGACACAGAAGTTATTCCAAAGCTTGCCAAATATGTCTTTGATAAAGCTAAAGAAGGAGAAGGTGACCAGACTATCACATTTAGTCAAGTAGTGCATGAGGTTATGAGGCATCTTGAAGGAGCCTATGCGCTGATTTTTAAAAGCCGGCATTATCCAAATGAGTTGATTGCTTGTAAACGTGGCAGTCCGTTGCTCCTTGGTGTGAAAGAACTTAATGAAAATGCTAGCAATAGTTCTGCATTTCATGATGATAATTTCCTTTCAAAAAGTGGACATCCTAAAGAACTCTTCTTGTCCAGTGATGCAAATGCCGTAGTTGAACACACCAAAAAGGTTTTGGTGATTGAGGATGGTGAATTGGTTCATCTTAAGGAAGCAGAATTCATAAGACATATCGACTCAAAGCTGGCTTTTGGGAATCGATTAAATCTGGTTTTCAGTCAGCATGTCTTTGCACGATACAACATTTTGCTTTATTTGCACTCATTTAACCTCAGGAGAGAAGGATTGGAGGGTGATGAGCTAAGAAGGAATTCTGATGTCATGGAGATCCTAAAGAAGACAAGTTTCCAAAGATCAGTTGAAGCTCTCAAAACCACTCTGGAAGGCTCCCTCCTAATACCAGAGATGAACGATGCAAGACGTCATTTACGGCGCGCAGAGTGCGCCTTAAATAGAAATTCAGTCACTCTTTTACGGCGTGCAGGAAGTCCACAAACAACTGAGACTGAAGAAGATATAGACGATACAAAGATGCTGAGTGGAAAGGGAATGGCTGGCTACATCAGAAGAGGTTGGCGCGCTACCCTCAAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

306

Amino Acids

34.75

Weight (kDa)

8.72

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 748
AccII CGCG 2 cut(s) 759, 903
AclWI GGATC 1 cut(s) 646
AcsI RAATTY 4 cut(s) 44, 482, 634, 781
AcuI CTGAAG 1 cut(s) 852
AcyI GRCGYC 1 cut(s) 745
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 6 cut(s) 24, 92, 218, 366, 422, 686
AluBI AGCT 5 cut(s) 124, 149, 508, 625, 689
AluI AGCT 5 cut(s) 124, 149, 508, 625, 689
Alw26I GTCTC 1 cut(s) 821
AlwI GGATC 1 cut(s) 646
AoxI GGCC 1 cut(s) 51
ApoI RAATTY 4 cut(s) 44, 482, 634, 781
Asp700I GAANNNNTTC 3 cut(s) 114, 462, 634
AspLEI GCGC 6 cut(s) 232, 759, 761, 770, 903, 905
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 4 cut(s) 176, 454, 467, 629
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 1 cut(s) 37
AxyI CCTNAGG 1 cut(s) 596
BaeGI GKGCMC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 668
BccI CCATC 2 cut(s) 10, 446
BceAI ACGGC 3 cut(s) 398, 770, 815
BcoDI GTCTC 1 cut(s) 821
BfaI CTAG 2 cut(s) 68, 327
BfrI CTTAAG 1 cut(s) 470
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 223, 712
BmsI GCATC 4 cut(s) 220, 394, 727, 846
BmtI GCTAGC 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 896
Bsa29I ATCGAT 1 cut(s) 523
BsaHI GRCGYC 1 cut(s) 745
BsaJI CCNNGG 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 246
Bse1I ACTGG 2 cut(s) 39, 399
Bse21I CCTNAGG 1 cut(s) 596
BseCI ATCGAT 1 cut(s) 523
BseDI CCNNGG 1 cut(s) 298
BseGI GGATG 2 cut(s) 376, 457
BseMII CTCAG 3 cut(s) 610, 816, 851
BseNI ACTGG 2 cut(s) 39, 399
BsePI GCGCGC 2 cut(s) 757, 901
BseSI GKGCMC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 825
Bsh1236I CGCG 2 cut(s) 759, 903
BshFI GGCC 1 cut(s) 53
BshVI ATCGAT 1 cut(s) 523
BsiSI CCGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 821
BsnI GGCC 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 651, 677
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 3 cut(s) 609, 817, 852
BspDI ATCGAT 1 cut(s) 523
BspFNI CGCG 2 cut(s) 759, 903
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 223, 712
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 1 cut(s) 646
BspTI CTTAAG 1 cut(s) 470
BsrFI RCCGGY 1 cut(s) 246
BsrI ACTGG 2 cut(s) 39, 399
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 298
BssHII GCGCGC 2 cut(s) 757, 901
BssMI GATC 2 cut(s) 651, 677
BssNI GRCGYC 1 cut(s) 745
BssT1I CCWWGG 1 cut(s) 298
Bst6I CTCTTC 2 cut(s) 395, 886
BstACI GRCGYC 1 cut(s) 745
BstAFI CTTAAG 1 cut(s) 470
BstC8I GCNNGC 8 cut(s) 126, 248, 328, 510, 759, 804, 880, 903
BstDEI CTNAG 5 cut(s) 12, 596, 626, 825, 860
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 2 cut(s) 376, 457
BstFNI CGCG 2 cut(s) 759, 903
BstHHI GCGC 6 cut(s) 232, 759, 761, 770, 903, 905
BstKTI GATC 2 cut(s) 654, 680
BstMAI GTCTC 1 cut(s) 821
BstMBI GATC 2 cut(s) 651, 677
BstMWI GCNNNNNNNGC 3 cut(s) 580, 765, 767
BstNSI RCATGY 1 cut(s) 551
BstPI GGTNACC 1 cut(s) 164
BstSLI GKGCMC 1 cut(s) 65
BstUI CGCG 2 cut(s) 759, 903
BstV2I GAAGAC 1 cut(s) 668
BstX2I RGATCY 1 cut(s) 651
BstYI RGATCY 1 cut(s) 651
Bsu15I ATCGAT 1 cut(s) 523
Bsu36I CCTNAGG 1 cut(s) 596
BsuRI GGCC 1 cut(s) 53
BsuTUI ATCGAT 1 cut(s) 523
BtsCI GGATG 2 cut(s) 376, 457
BtsIMutI CAGTG 1 cut(s) 406
Cac8I GCNNGC 8 cut(s) 126, 248, 328, 510, 759, 804, 880, 903
CciI TCATGA 1 cut(s) 346
CfoI GCGC 6 cut(s) 232, 759, 761, 770, 903, 905
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 523
CviAII CATG 5 cut(s) 77, 197, 347, 548, 646
DdeI CTNAG 5 cut(s) 12, 596, 626, 825, 860
DpnI GATC 2 cut(s) 653, 679
DpnII GATC 2 cut(s) 651, 677
DraI TTTAAA 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 395, 886
EarI CTCTTC 2 cut(s) 395, 886
Eco130I CCWWGG 1 cut(s) 298
Eco147I AGGCCT 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 852
Eco81I CCTNAGG 1 cut(s) 596
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
EcoRI GAATTC 2 cut(s) 482, 634
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 5 cut(s) 80, 200, 350, 551, 649
FatI CATG 5 cut(s) 76, 196, 346, 547, 645
FokI GGATG 2 cut(s) 363, 464
FspBI CTAG 2 cut(s) 68, 327
GlaI GCGC 6 cut(s) 231, 758, 760, 769, 902, 904
HaeIII GGCC 1 cut(s) 53
HapII CCGG 1 cut(s) 247
HhaI GCGC 6 cut(s) 232, 759, 761, 770, 903, 905
Hin1I GRCGYC 1 cut(s) 745
Hin1II CATG 5 cut(s) 80, 200, 350, 551, 649
Hin6I GCGC 6 cut(s) 230, 757, 759, 768, 901, 903
HinP1I GCGC 6 cut(s) 230, 757, 759, 768, 901, 903
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 2 cut(s) 500, 520
HpaII CCGG 1 cut(s) 247
HphI GGTGA 4 cut(s) 176, 454, 467, 629
Hpy166II GTNNAC 3 cut(s) 278, 374, 815
Hpy188I TCNGA 3 cut(s) 97, 640, 890
Hpy188III TCNNGA 4 cut(s) 215, 347, 598, 704
Hpy8I GTNNAC 3 cut(s) 278, 374, 815
HpyAV CCTTC 6 cut(s) 149, 155, 212, 599, 624, 701
HpyCH4IV ACGT 2 cut(s) 280, 745
HpyCH4V TGCA 7 cut(s) 196, 341, 407, 557, 583, 740, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 580, 765, 767
HpyF3I CTNAG 5 cut(s) 12, 596, 626, 825, 860
HpySE526I ACGT 2 cut(s) 280, 745
Hsp92I GRCGYC 1 cut(s) 745
Hsp92II CATG 5 cut(s) 80, 200, 350, 551, 649
HspAI GCGC 6 cut(s) 230, 757, 759, 768, 901, 903
KroI GCCGGC 1 cut(s) 246
KroNI GCCGGC 1 cut(s) 248
Kzo9I GATC 2 cut(s) 651, 677
LmnI GCTCC 3 cut(s) 221, 300, 716
LweI GCATC 4 cut(s) 220, 394, 727, 846
MaeI CTAG 2 cut(s) 68, 327
MaeII ACGT 2 cut(s) 280, 745
MaeIII GTNAC 2 cut(s) 164, 787
MalI GATC 2 cut(s) 653, 679
MboI GATC 2 cut(s) 651, 677
MboII GAAGA 5 cut(s) 382, 673, 845, 848, 903
MflI RGATCY 1 cut(s) 651
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 6 cut(s) 44, 355, 458, 482, 634, 781
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 8 cut(s) 193, 201, 442, 605, 607, 725, 887, 920
MroNI GCCGGC 1 cut(s) 246
MroXI GAANNNNTTC 3 cut(s) 114, 462, 634
MseI TTAA 7 cut(s) 56, 240, 315, 471, 527, 591, 773
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 1 cut(s) 247
MvnI CGCG 2 cut(s) 759, 903
MwoI GCNNNNNNNGC 3 cut(s) 580, 765, 767
NaeI GCCGGC 1 cut(s) 248
NdeII GATC 2 cut(s) 651, 677
NgoMIV GCCGGC 1 cut(s) 246
NheI GCTAGC 1 cut(s) 326
NlaIII CATG 5 cut(s) 80, 200, 350, 551, 649
NlaIV GGNNCC 2 cut(s) 223, 712
NmuCI GTSAC 2 cut(s) 164, 787
NspI RCATGY 1 cut(s) 551
PagI TCATGA 1 cut(s) 346
PauI GCGCGC 2 cut(s) 757, 901
PceI AGGCCT 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 248
PdmI GAANNNNTTC 3 cut(s) 114, 462, 634
PfeI GAWTC 1 cut(s) 520
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PspEI GGTNACC 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 223, 712
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 651
PteI GCGCGC 2 cut(s) 757, 901
SaqAI TTAA 7 cut(s) 56, 240, 315, 471, 527, 591, 773
Sau3AI GATC 2 cut(s) 651, 677
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 494
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 4 cut(s) 220, 394, 727, 846
SinI GGWCC 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 470, 911
SmoI CTYRAG 2 cut(s) 470, 911
Sse9I AATT 6 cut(s) 44, 355, 458, 482, 634, 781
SseBI AGGCCT 1 cut(s) 53
SspMI CTAG 2 cut(s) 68, 327
StuI AGGCCT 1 cut(s) 53
StyI CCWWGG 1 cut(s) 298
TaiI ACGT 2 cut(s) 283, 748
TaqI TCGA 2 cut(s) 498, 523
TasI AATT 6 cut(s) 44, 355, 458, 482, 634, 781
TfiI GAWTC 1 cut(s) 520
Tru1I TTAA 7 cut(s) 56, 240, 315, 471, 527, 591, 773
Tru9I TTAA 7 cut(s) 56, 240, 315, 471, 527, 591, 773
TscAI CASTG 1 cut(s) 406
TseFI GTSAC 2 cut(s) 164, 787
Tsp45I GTSAC 2 cut(s) 164, 787
TspDTI ATGAA 5 cut(s) 333, 335, 455, 475, 746
TspGWI ACGGA 2 cut(s) 29, 279
TspRI CASTG 1 cut(s) 406
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 4 cut(s) 44, 482, 634, 781
XceI RCATGY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XmnI GAANNNNTTC 3 cut(s) 114, 462, 634
XspI CTAG 2 cut(s) 68, 327
ZraI GACGTC 1 cut(s) 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.