RchiOBHm_Chr6g0291631

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000177
Physical Location & Seq
Reverse (-)
54713579 .. 54716563
2985 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26167

Sequence Viewer

Length: 723 bp
ATGTCTGGTCCTCAGTGCTGCGAGAACCCACCGAGCCTTAGCTCAACCTGCGGAGCTGGATCAGTCACTGAAATTGGAGGCTTGAAGGCCTATGTTACTGGCCCTTCTGATTCCAAGCTTGCCCTTCTCCTGGTTTCTGATATCCATGGATTTGAAGCACCAAAGTTCAGGGAGCTTGCAGACAAAACTGCTACCGCTTCCGGATTCCATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATTCAATCCTGACAAAACTGAGAAGCTTGTGTGGCTACAGTCTCATGGAACAGACAAAGGATTTGAAGATGCTAAACTTGTAATTGGTGCTCTAAGGAACAAAGGGATTTCCACAATAGGAGCTGCAGGGTTCTGTTGGGGAGGTAAGGTAGTTGTGGAGCTATCGAAGTCTGATTACATTCAGGCTGCAGTGTTGTTGCACCCTTCTCGTGTCACTGTTGATGATATTAAAGAGGTTAAGGCTCCAATAGCCATATTGGGTGCTGAGTTTGACGAGATCTCTCCACCTGAACTCCTGAAACAGTTTGAGGAGGTTTTGTCAACGAAGCCTGAGGTGAGTGGCTATGTGAAAATATTTCCTGGTGTTCCGCATGGATGGGCAGTGAGGTATAAAGATGAGGATGAGACTGCTGTCAAACTTGCTAATGAAGCTCATCAAGATATGTTGGATTGGTTTACTAAGTACATCTTGTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

240

Amino Acids

26.08

Weight (kDa)

5.07

Isoelectric Point (pI)

32.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 29 - 236 7.9e-29 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 3 cut(s) 51, 195, 611
AclWI GGATC 2 cut(s) 67, 233
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 2 cut(s) 130, 214
AgsI TTSAA 4 cut(s) 85, 155, 247, 308
AjnI CCWGG 2 cut(s) 129, 601
AluBI AGCT 8 cut(s) 42, 56, 118, 175, 268, 365, 403, 674
AluI AGCT 8 cut(s) 42, 56, 118, 175, 268, 365, 403, 674
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 2 cut(s) 288, 641
AlwI GGATC 2 cut(s) 67, 233
AlwNI CAGNNNCTG 1 cut(s) 68
Aor13HI TCCGGA 1 cut(s) 200
AoxI GGCC 2 cut(s) 87, 100
ApeKI GCWGC 3 cut(s) 18, 365, 428
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspS9I GGNCC 2 cut(s) 8, 101
AsuHPI GGTGA 1 cut(s) 589
AvaII GGWCC 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 573
BarI GAAGNNNNNNTAC 2 cut(s) 401, 433
BauI CACGAG 1 cut(s) 450
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 5, 352, 415
BccI CCATC 1 cut(s) 612
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BciT130I CCWGG 2 cut(s) 131, 603
BcoDI GTCTC 2 cut(s) 288, 641
BfmI CTRYAG 3 cut(s) 278, 366, 429
BfuAI ACCTGC 1 cut(s) 56
BglII AGATCT 1 cut(s) 519
BisI GCNGC 3 cut(s) 19, 366, 429
BlsI GCNGC 3 cut(s) 20, 367, 430
Bme1390I CCNGG 2 cut(s) 131, 603
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 8, 101
BmiI GGNNCC 2 cut(s) 219, 486
BmrFI CCNGG 2 cut(s) 131, 603
BmsI GCATC 1 cut(s) 301
BoxI GACNNNNGTC 1 cut(s) 653
Bpu10I CCTNAGC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 145
BsaWI WCCGGW 1 cut(s) 200
BsaXI ACNNNNNCTCC 6 cut(s) 375, 405, 519, 545, 549, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 130, 214
Bse1I ACTGG 1 cut(s) 103
Bse21I CCTNAGG 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 200
BseBI CCWGG 2 cut(s) 131, 603
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 2 cut(s) 623, 649
BseLI CCNNNNNNNGG 2 cut(s) 130, 214
BseMII CTCAG 4 cut(s) 26, 252, 498, 564
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 3 cut(s) 5, 352, 415
BshFI GGCC 2 cut(s) 89, 102
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 130, 214
BsmAI GTCTC 2 cut(s) 288, 641
BsnI GGCC 2 cut(s) 89, 102
Bsp1286I GDGCHC 1 cut(s) 334
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 3 cut(s) 59, 238, 519
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 3 cut(s) 51, 195, 611
BspANI GGCC 2 cut(s) 89, 102
BspCNI CTCAG 4 cut(s) 25, 253, 499, 565
BspEI TCCGGA 1 cut(s) 200
BspLI GGNNCC 2 cut(s) 219, 486
BspMAI CTGCAG 2 cut(s) 370, 433
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 67, 233
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 3 cut(s) 59, 238, 519
BssSI CACGAG 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 131, 603
Bst4CI ACNGT 3 cut(s) 282, 460, 546
BstC8I GCNNGC 2 cut(s) 120, 177
BstDEI CTNAG 7 cut(s) 12, 38, 261, 335, 507, 573, 702
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 623, 649
BstKTI GATC 3 cut(s) 62, 241, 522
BstMAI GTCTC 2 cut(s) 288, 641
BstMBI GATC 3 cut(s) 59, 238, 519
BstMWI GCNNNNNNNGC 4 cut(s) 48, 274, 491, 671
BstNI CCWGG 2 cut(s) 131, 603
BstPAI GACNNNNGTC 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 129, 601
BstSFI CTRYAG 3 cut(s) 278, 366, 429
BstV1I GCAGC 3 cut(s) 5, 352, 415
BstX2I RGATCY 2 cut(s) 238, 519
BstYI RGATCY 2 cut(s) 238, 519
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 2 cut(s) 89, 102
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 2 cut(s) 623, 649
BtsI GCAGTG 2 cut(s) 438, 630
BtsIMutI CAGTG 5 cut(s) 20, 66, 438, 456, 630
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 120, 177
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 8, 101
Csp6I GTAC 1 cut(s) 706
CviAII CATG 4 cut(s) 146, 209, 287, 614
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 7 cut(s) 12, 38, 261, 335, 507, 573, 702
DpnI GATC 3 cut(s) 61, 240, 521
DpnII GATC 3 cut(s) 59, 238, 519
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 89
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 8
Eco81I CCTNAGG 1 cut(s) 573
EcoRII CCWGG 2 cut(s) 129, 601
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 4 cut(s) 149, 212, 290, 617
FalI AAGNNNNNCTT 1 cut(s) 695
FatI CATG 4 cut(s) 145, 208, 286, 613
Fnu4HI GCNGC 3 cut(s) 19, 366, 429
FokI GGATG 2 cut(s) 630, 656
Fsp4HI GCNGC 3 cut(s) 19, 366, 429
GluI GCNGC 3 cut(s) 19, 366, 429
HaeIII GGCC 2 cut(s) 89, 102
HapII CCGG 1 cut(s) 201
Hin1II CATG 4 cut(s) 149, 212, 290, 617
HincII GTYRAC 1 cut(s) 564
HindII GTYRAC 1 cut(s) 564
HindIII AAGCTT 2 cut(s) 116, 266
HinfI GANTC 2 cut(s) 110, 204
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 589
Hpy166II GTNNAC 2 cut(s) 564, 699
Hpy188I TCNGA 3 cut(s) 109, 139, 415
Hpy188III TCNNGA 5 cut(s) 201, 221, 251, 538, 680
Hpy8I GTNNAC 2 cut(s) 564, 699
HpyAV CCTTC 4 cut(s) 79, 114, 134, 456
HpyCH4III ACNGT 3 cut(s) 282, 460, 546
HpyCH4V TGCA 4 cut(s) 179, 368, 431, 442
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 274, 491, 671
HpyF3I CTNAG 7 cut(s) 12, 38, 261, 335, 507, 573, 702
Hsp92II CATG 4 cut(s) 149, 212, 290, 617
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 3 cut(s) 59, 238, 519
LmnI GCTCC 5 cut(s) 53, 172, 362, 400, 490
Lsp1109I GCAGC 3 cut(s) 5, 352, 415
LweI GCATC 1 cut(s) 301
MaeIII GTNAC 3 cut(s) 64, 94, 454
MalI GATC 3 cut(s) 61, 240, 521
MboI GATC 3 cut(s) 59, 238, 519
MboII GAAGA 1 cut(s) 320
MflI RGATCY 2 cut(s) 238, 519
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 2 cut(s) 72, 324
MmeI TCCRAC 1 cut(s) 669
MnlI CCTC 9 cut(s) 21, 71, 377, 469, 544, 547, 568, 621, 634
MroI TCCGGA 1 cut(s) 200
MseI TTAA 2 cut(s) 471, 480
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 131, 603
MvaI CCWGG 2 cut(s) 131, 603
MwoI GCNNNNNNNGC 4 cut(s) 48, 274, 491, 671
NcoI CCATGG 1 cut(s) 145
NdeII GATC 3 cut(s) 59, 238, 519
NlaIII CATG 4 cut(s) 149, 212, 290, 617
NlaIV GGNNCC 2 cut(s) 219, 486
NmuCI GTSAC 2 cut(s) 64, 454
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 2 cut(s) 110, 204
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 3 cut(s) 20, 367, 430
PshAI GACNNNNGTC 1 cut(s) 653
Psp6I CCWGG 2 cut(s) 129, 601
PspGI CCWGG 2 cut(s) 129, 601
PspN4I GGNNCC 2 cut(s) 219, 486
PspPI GGNCC 2 cut(s) 8, 101
PstI CTGCAG 2 cut(s) 370, 433
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 2 cut(s) 238, 519
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
SaqAI TTAA 2 cut(s) 471, 480
SatI GCNGC 3 cut(s) 19, 366, 429
Sau3AI GATC 3 cut(s) 59, 238, 519
Sau96I GGNCC 2 cut(s) 8, 101
ScrFI CCNGG 2 cut(s) 131, 603
SduI GDGCHC 1 cut(s) 334
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 3 cut(s) 278, 366, 429
SinI GGWCC 1 cut(s) 8
Sse9I AATT 2 cut(s) 72, 324
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 3 cut(s) 51, 195, 611
SspI AATATT 1 cut(s) 597
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 2 cut(s) 129, 601
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 282, 460, 546
TaqI TCGA 1 cut(s) 407
TasI AATT 2 cut(s) 72, 324
TatI WGTACW 1 cut(s) 705
TfiI GAWTC 2 cut(s) 110, 204
Tru1I TTAA 2 cut(s) 471, 480
Tru9I TTAA 2 cut(s) 471, 480
TscAI CASTG 5 cut(s) 20, 73, 438, 463, 630
TseFI GTSAC 2 cut(s) 64, 454
TseI GCWGC 3 cut(s) 18, 365, 428
Tsp45I GTSAC 2 cut(s) 64, 454
TspDTI ATGAA 1 cut(s) 684
TspRI CASTG 5 cut(s) 20, 73, 438, 463, 630
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.