Rh2DG376200

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000177
Physical Location & Seq
Reverse (-)
53847912 .. 53852480
4569 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG376200.1

Sequence Viewer

Length: 444 bp
ATGTCAGGCCCTCAGTGCTGTTCTAACCCACCAATTATCAAGACAAGCTGTGGTTCAGACTCTGCTGAAAAATTTGGAGGCCTTACTGTCTATGTGACAGGATCTCCCAACTCCAAGCGTGCTATTCTTCTTATCTCTGATGTTTTTGGGGTTAAATCTCCAATTGCCGTACTAGGAGCTGAGATTGACAACTACTCTCCACCAGAACTCGTGAAAGAGTTTGAGGAGATATTAAATGCTAAACCCGAGGTTGATAGCTATGTGAAGATATTTCCAAAAGTTGCACATGGTTGGGCTGTGAGGTATGATGTTGATGATGAAGCAGCTGCAAAGAGTGCAGAGGAAGCTCATAATGACATGTTGCAGTGGTTTGCTAAGCATGTAAAGAAGCATGTGCTTGCAGCGGCGGAATTTGATGGGTTTGGAAAGGCCTCATCGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

147

Amino Acids

15.84

Weight (kDa)

5.33

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 50 - 127 4.7e-09 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 404, 407
AclWI GGATC 1 cut(s) 109
AcsI RAATTY 2 cut(s) 71, 410
AfaI GTAC 1 cut(s) 171
AflIII ACRYGT 1 cut(s) 357
AluBI AGCT 5 cut(s) 48, 179, 258, 326, 347
AluI AGCT 5 cut(s) 48, 179, 258, 326, 347
AlwI GGATC 1 cut(s) 109
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 7, 79, 429
ApeKI GCWGC 3 cut(s) 323, 326, 401
ApoI RAATTY 2 cut(s) 71, 410
AspS9I GGNCC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 245
BauI CACGAG 1 cut(s) 209
BbvI GCAGC 3 cut(s) 313, 335, 413
BccI CCATC 1 cut(s) 410
BceAI ACGGC 1 cut(s) 152
BfaI CTAG 2 cut(s) 173, 442
BisI GCNGC 4 cut(s) 324, 327, 402, 405
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 4 cut(s) 325, 328, 403, 406
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 8
Bpu1102I GCTNAGC 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
BseCI ATCGAT 1 cut(s) 437
BseDI CCNNGG 1 cut(s) 246
BseMII CTCAG 2 cut(s) 26, 171
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 3 cut(s) 313, 335, 413
BsgI GTGCAG 1 cut(s) 357
BshFI GGCC 3 cut(s) 9, 81, 431
BshVI ATCGAT 1 cut(s) 437
BsiHKCI CYCGRG 1 cut(s) 245
BsnI GGCC 3 cut(s) 9, 81, 431
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 2 cut(s) 101, 438
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 2 cut(s) 404, 407
BspANI GGCC 3 cut(s) 9, 81, 431
BspCNI CTCAG 2 cut(s) 25, 172
BspDI ATCGAT 1 cut(s) 437
BspPI GGATC 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 2 cut(s) 101, 438
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
Bst4CI ACNGT 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 120, 399
BstDEI CTNAG 3 cut(s) 12, 180, 375
BstKTI GATC 2 cut(s) 104, 441
BstMBI GATC 2 cut(s) 101, 438
BstMWI GCNNNNNNNGC 3 cut(s) 15, 335, 344
BstNSI RCATGY 3 cut(s) 361, 383, 395
BstV1I GCAGC 3 cut(s) 313, 335, 413
BstX2I RGATCY 1 cut(s) 101
BstYI RGATCY 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 437
BsuRI GGCC 3 cut(s) 9, 81, 431
BsuTUI ATCGAT 1 cut(s) 437
BtsI GCAGTG 1 cut(s) 371
BtsIMutI CAGTG 2 cut(s) 20, 371
Cac8I GCNNGC 2 cut(s) 120, 399
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 437
Csp6I GTAC 1 cut(s) 170
CviAII CATG 4 cut(s) 287, 358, 380, 392
CviJI RGCY 9 cut(s) 9, 48, 81, 179, 258, 296, 326, 347, 431
CviKI_1 RGCY 9 cut(s) 9, 48, 81, 179, 258, 296, 326, 347, 431
CviQI GTAC 1 cut(s) 170
DdeI CTNAG 3 cut(s) 12, 180, 375
DpnI GATC 2 cut(s) 103, 440
DpnII GATC 2 cut(s) 101, 438
EciI GGCGGA 1 cut(s) 422
Eco147I AGGCCT 2 cut(s) 81, 431
Eco88I CYCGRG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 8
FaeI CATG 4 cut(s) 290, 361, 383, 395
FaiI YATR 8 cut(s) 93, 261, 288, 306, 351, 359, 381, 393
FatI CATG 4 cut(s) 286, 357, 379, 391
Fnu4HI GCNGC 4 cut(s) 324, 327, 402, 405
Fsp4HI GCNGC 4 cut(s) 324, 327, 402, 405
FspBI CTAG 2 cut(s) 173, 442
GluI GCNGC 4 cut(s) 324, 327, 402, 405
HaeIII GGCC 3 cut(s) 9, 81, 431
Hin1II CATG 4 cut(s) 290, 361, 383, 395
HinfI GANTC 1 cut(s) 59
Hpy188I TCNGA 2 cut(s) 58, 139
Hpy188III TCNNGA 2 cut(s) 40, 211
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 5 cut(s) 284, 329, 338, 364, 401
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 335, 344
HpyF3I CTNAG 3 cut(s) 12, 180, 375
Hsp92II CATG 4 cut(s) 290, 361, 383, 395
Kzo9I GATC 2 cut(s) 101, 438
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 2 cut(s) 84, 216
Lsp1109I GCAGC 3 cut(s) 313, 335, 413
MaeI CTAG 2 cut(s) 173, 442
MaeIII GTNAC 1 cut(s) 94
MalI GATC 2 cut(s) 103, 440
MboI GATC 2 cut(s) 101, 438
MboII GAAGA 2 cut(s) 119, 277
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 101
MluCI AATT 4 cut(s) 33, 71, 162, 410
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 7 cut(s) 21, 71, 217, 241, 294, 334, 442
MseI TTAA 2 cut(s) 153, 233
MspA1I CMGCKG 2 cut(s) 326, 404
MunI CAATTG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 15, 335, 344
NdeII GATC 2 cut(s) 101, 438
NlaIII CATG 4 cut(s) 290, 361, 383, 395
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 3 cut(s) 361, 383, 395
PceI AGGCCT 2 cut(s) 81, 431
PciI ACATGT 1 cut(s) 357
PkrI GCNGC 4 cut(s) 325, 328, 403, 406
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PscI ACATGT 1 cut(s) 357
PspPI GGNCC 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 62
PsuI RGATCY 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 171
RsaNI GTAC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 153, 233
SatI GCNGC 4 cut(s) 324, 327, 402, 405
Sau3AI GATC 2 cut(s) 101, 438
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 53
SetI ASST 7 cut(s) 50, 181, 252, 260, 305, 328, 349
Sse9I AATT 4 cut(s) 33, 71, 162, 410
SseBI AGGCCT 2 cut(s) 81, 431
SsiI CCGC 2 cut(s) 404, 407
SspMI CTAG 2 cut(s) 173, 442
StuI AGGCCT 2 cut(s) 81, 431
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 437
TasI AATT 4 cut(s) 33, 71, 162, 410
TauI GCSGC 1 cut(s) 407
Tru1I TTAA 2 cut(s) 153, 233
Tru9I TTAA 2 cut(s) 153, 233
TscAI CASTG 2 cut(s) 20, 371
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 3 cut(s) 323, 326, 401
Tsp45I GTSAC 1 cut(s) 94
TspDTI ATGAA 1 cut(s) 333
TspRI CASTG 2 cut(s) 20, 371
XapI RAATTY 2 cut(s) 71, 410
XceI RCATGY 3 cut(s) 361, 383, 395
XspI CTAG 2 cut(s) 173, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.