MD13G1181300.v1.1

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
15097841 .. 15099462
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1181300.v1.1.491

Sequence Viewer

Length: 360 bp
ATGAATCAGAACACTGTCTGCAATTTTATGTGCCAATATTTGTGTGTAAAATTTGTCGCTTGGAAGAGTAGAGGTTTGAGAACAGCGTGGTTCTTTAAGGTTTGGAATTTGCTGAGTGGGAAAGAAAAAAAGAAAGAAATCATGGCAAGCTCTGAGTGCTGCTCAAACCCACCAGCCCTGAACCCGTCCAGCGGCTCCGGCCACGTCGAAAAGCTCGGCGGTTTCGATTCCTATGTCACTGGCTCCCCTGACTCCAGGCTTTCAGTTCTTCTCGTCCATGACGCTTTTGTTGATTGCATTGCTGTTCTATCAGAAAACCACTTGTTAATGTTACATTTTGTTTGGCAATGCAAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.36

Weight (kDa)

8.51

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 192, 219
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 50, 106
AfiI CCNNNNNNNGG 1 cut(s) 191
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 254
AluBI AGCT 2 cut(s) 150, 214
AluI AGCT 2 cut(s) 150, 214
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 159
ApoI RAATTY 2 cut(s) 50, 106
BbvI GCAGC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 256
BisI GCNGC 2 cut(s) 160, 193
BlsI GCNGC 2 cut(s) 161, 194
Bme1390I CCNGG 1 cut(s) 256
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 196, 244
BmrFI CCNGG 1 cut(s) 256
BplI GAGNNNNNCTC 2 cut(s) 146, 178
BpmI CTGGAG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 2 cut(s) 297, 353
BseBI CCWGG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 2 cut(s) 297, 353
BseMII CTCAG 2 cut(s) 104, 144
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 146
BshFI GGCC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 201
BspACI CCGC 2 cut(s) 192, 219
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 105, 145
BspLI GGNNCC 2 cut(s) 196, 244
BsrDI GCAATG 2 cut(s) 297, 353
BsrI ACTGG 1 cut(s) 244
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 113, 153
BstMWI GCNNNNNNNGC 2 cut(s) 156, 198
BstNI CCWGG 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 201
BtrI CACGTC 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 12, 237
Cac8I GCNNGC 1 cut(s) 148
CseI GACGC 1 cut(s) 290
CviAII CATG 2 cut(s) 142, 278
CviJI RGCY 7 cut(s) 150, 176, 195, 201, 214, 243, 259
CviKI_1 RGCY 7 cut(s) 150, 176, 195, 201, 214, 243, 259
DdeI CTNAG 2 cut(s) 113, 153
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 254
FaeI CATG 2 cut(s) 145, 281
FaiI YATR 5 cut(s) 29, 143, 234, 279, 358
FatI CATG 2 cut(s) 141, 277
Fnu4HI GCNGC 2 cut(s) 160, 193
Fsp4HI GCNGC 2 cut(s) 160, 193
GluI GCNGC 2 cut(s) 160, 193
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 1 cut(s) 201
HapII CCGG 1 cut(s) 198
HgaI GACGC 1 cut(s) 290
Hin1II CATG 2 cut(s) 145, 281
HinfI GANTC 3 cut(s) 4, 227, 251
HpaII CCGG 1 cut(s) 198
Hpy188I TCNGA 3 cut(s) 9, 154, 313
Hpy99I CGWCG 1 cut(s) 209
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 21, 297, 351
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 198
HpyF3I CTNAG 2 cut(s) 113, 153
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 2 cut(s) 145, 281
LmnI GCTCC 2 cut(s) 200, 248
LpnPI CCDG 8 cut(s) 186, 191, 202, 211, 225, 241, 261, 268
Lsp1109I GCAGC 1 cut(s) 146
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 2 cut(s) 235, 330
MboII GAAGA 2 cut(s) 76, 260
MluCI AATT 3 cut(s) 22, 50, 106
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 1 cut(s) 65
MseI TTAA 2 cut(s) 96, 326
MspA1I CMGCKG 1 cut(s) 192
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 256
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 156, 198
NlaIII CATG 2 cut(s) 145, 281
NlaIV GGNNCC 2 cut(s) 196, 244
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PfeI GAWTC 2 cut(s) 4, 227
PkrI GCNGC 2 cut(s) 161, 194
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 196, 244
SaqAI TTAA 2 cut(s) 96, 326
SatI GCNGC 2 cut(s) 160, 193
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 256
SetI ASST 6 cut(s) 76, 102, 152, 207, 216, 357
Sse9I AATT 3 cut(s) 22, 50, 106
SsiI CCGC 2 cut(s) 192, 219
SspI AATATT 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 207, 225
TasI AATT 3 cut(s) 22, 50, 106
TauI GCSGC 1 cut(s) 195
TfiI GAWTC 2 cut(s) 4, 227
Tru1I TTAA 2 cut(s) 96, 326
Tru9I TTAA 2 cut(s) 96, 326
TscAI CASTG 2 cut(s) 19, 244
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 19, 244
XapI RAATTY 2 cut(s) 50, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.