RLG00000007844

1,4-beta-D-glucanase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
21883040 .. 21884748
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007844

Sequence Viewer

Length: 339 bp
ATGGCGCCTGGCCTTCTTTTCTGTAGGAAGCTCGCAGACAAAGTTGCAGATGCTGGCTTCTTTGTTGTGGTCCCTGACTTCTTTAATGGAGACCCTTATGTACTTGCAGCTGATGGATCCTTTGACTCTCTACCTACTTGGCTGAAAGCCAAGGTTGCAGTTGAACTTGCAAAGGGTGACTTTATCCAAGCTGCTGTTCTGGCTCATCCTTCTTGGGTCACTGTGGATGATATCAAGGAAGCTATGAAGCCTTCTGAAACTTCTGGAGCTGTTCTTGAACCATTGCAAGGGAAATTGTCACTTAAGAAACAGTACCGTGTGGATCTTATGGTTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.16

Weight (kDa)

5.73

Isoelectric Point (pI)

8.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 3 cut(s) 111, 124, 330
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 102, 314
AfiI CCNNNNNNNGG 1 cut(s) 287
AflII CTTAAG 1 cut(s) 302
AgsI TTSAA 2 cut(s) 164, 278
AjnI CCWGG 1 cut(s) 7
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 5 cut(s) 31, 110, 191, 242, 269
AluI AGCT 5 cut(s) 31, 110, 191, 242, 269
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 3 cut(s) 111, 124, 330
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 1 cut(s) 10
ApeKI GCWGC 2 cut(s) 107, 191
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 70
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 119, 178
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 302
BisI GCNGC 2 cut(s) 108, 192
BlsI GCNGC 2 cut(s) 109, 193
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 3 cut(s) 6, 72, 118
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 40
BpmI CTGGAG 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 2 cut(s) 205, 232
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 119, 178
BshFI GGCC 1 cut(s) 12
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 84
BsmFI GGGAC 1 cut(s) 56
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 116, 322
BspANI GGCC 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 6, 72, 118
BspPI GGATC 3 cut(s) 111, 124, 330
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 116, 322
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 3 cut(s) 223, 312, 317
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 302
BstC8I GCNNGC 2 cut(s) 33, 55
BstF5I GGATG 2 cut(s) 205, 232
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 2 cut(s) 119, 325
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 116, 322
BstMWI GCNNNNNNNGC 2 cut(s) 155, 200
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 119, 178
BstX2I RGATCY 2 cut(s) 116, 322
BstYI RGATCY 2 cut(s) 116, 322
BsuRI GGCC 1 cut(s) 12
BtsCI GGATG 2 cut(s) 205, 232
BtsIMutI CAGTG 1 cut(s) 219
Cac8I GCNNGC 2 cut(s) 33, 55
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 101, 313
CviQI GTAC 2 cut(s) 101, 313
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 118, 324
DpnII GATC 2 cut(s) 116, 322
Eco130I CCWWGG 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 84
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 70
EcoRII CCWGG 1 cut(s) 7
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 150
FaiI YATR 3 cut(s) 99, 245, 329
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 108, 192
FokI GGATG 2 cut(s) 192, 239
Fsp4HI GCNGC 2 cut(s) 108, 192
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 108, 192
GsuI CTGGAG 1 cut(s) 285
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 12
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 125
HphI GGTGA 1 cut(s) 188
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 264, 275
HpyAV CCTTC 3 cut(s) 23, 219, 261
HpyCH4III ACNGT 3 cut(s) 223, 312, 317
HpyCH4V TGCA 5 cut(s) 47, 107, 158, 170, 286
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 200
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 2 cut(s) 116, 322
LmnI GCTCC 1 cut(s) 266
LpnPI CCDG 5 cut(s) 21, 39, 87, 185, 249
Lsp1109I GCAGC 2 cut(s) 119, 178
LweI GCATC 1 cut(s) 40
MaeIII GTNAC 3 cut(s) 176, 217, 297
MalI GATC 2 cut(s) 118, 324
MboI GATC 2 cut(s) 116, 322
MflI RGATCY 2 cut(s) 116, 322
MluCI AATT 1 cut(s) 293
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 119
MseI TTAA 3 cut(s) 84, 303, 333
MspA1I CMGCKG 1 cut(s) 110
MspCI CTTAAG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 155, 200
NarI GGCGCC 1 cut(s) 5
NdeII GATC 2 cut(s) 116, 322
NlaIV GGNNCC 3 cut(s) 6, 72, 118
NmuCI GTSAC 3 cut(s) 176, 217, 297
PkrI GCNGC 2 cut(s) 109, 193
PleI GAGTC 1 cut(s) 119
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 6, 72, 118
PspPI GGNCC 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 53
PsuI RGATCY 2 cut(s) 116, 322
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 102, 314
RsaNI GTAC 2 cut(s) 101, 313
SaqAI TTAA 3 cut(s) 84, 303, 333
SatI GCNGC 2 cut(s) 108, 192
Sau3AI GATC 2 cut(s) 116, 322
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 9
SetI ASST 7 cut(s) 33, 112, 136, 156, 193, 244, 271
SfaNI GCATC 1 cut(s) 40
SfcI CTRYAG 1 cut(s) 22
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 293
SspDI GGCGCC 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 3 cut(s) 223, 312, 317
TasI AATT 1 cut(s) 293
TatI WGTACW 1 cut(s) 100
Tru1I TTAA 3 cut(s) 84, 303, 333
Tru9I TTAA 3 cut(s) 84, 303, 333
TscAI CASTG 1 cut(s) 226
TseFI GTSAC 3 cut(s) 176, 217, 297
TseI GCWGC 2 cut(s) 107, 191
Tsp45I GTSAC 3 cut(s) 176, 217, 297
TspDTI ATGAA 1 cut(s) 260
TspRI CASTG 1 cut(s) 226
Vha464I CTTAAG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.