Rh1CG131200

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000177
Physical Location & Seq
Reverse (-)
28871023 .. 28887229
16207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG131200.1

Sequence Viewer

Length: 483 bp
ATGTTGAGACGTTGCAGGACCATAGAGATAGTGTCAGACTGTCAGGTGCTGGTGGTGACTAATTCAACGGGTTGTCACTCGAAAATTGCAGACAAAGTTGCTAGCAAGGCTGGATTCAATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATACAATCCTAACAACACTCAGAGGAATATGACAGACTGGCTAAGGGAACATGGAACAGACAAAGGTTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAACAAAGGGGTATCCGGGATAGGAGCTGCAGGGTTCTGTTGGGGCGAGATTAAGACTCCAATAGCCATATTGGCTGCTCAAATATTTGACGAAGGCACTGCACCTGAACTCGTGAAACAGTTTAAGGAGATTTTATCCACTAATAAGGTAAGCATCTCCCAACTTCGAATAGTACGTCAAATGTTCACTCTCTGGCACGAATGGATAACCGTAAGTGAAATTCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

160

Amino Acids

17.86

Weight (kDa)

8.37

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 16 - 100 1.1e-08 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 474
AfaI GTAC 1 cut(s) 429
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 66, 118, 224
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 49
ApeKI GCWGC 3 cut(s) 245, 281, 329
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 4 cut(s) 203, 235, 415, 447
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 421
AsuNHI GCTAGC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 18
BauI CACGAG 1 cut(s) 365
BbvI GCAGC 3 cut(s) 232, 268, 316
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciVI GTATCC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 282
BfuI GTATCC 1 cut(s) 277
BglI GCCNNNNNGGC 1 cut(s) 326
BisI GCNGC 3 cut(s) 246, 282, 330
BlsI GCNGC 3 cut(s) 247, 283, 331
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 2 cut(s) 217, 417
BmtI GCTAGC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 194
Bpu14I TTCGAA 1 cut(s) 421
BpuMI CCSGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 3 cut(s) 232, 268, 316
BsgI GTGCAG 1 cut(s) 339
BsiSI CCGG 1 cut(s) 270
Bsp119I TTCGAA 1 cut(s) 421
Bsp143I GATC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 143
BspT104I TTCGAA 1 cut(s) 421
BsrI ACTGG 1 cut(s) 194
BssMI GATC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 365
Bst2BI CACGAG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 41, 375, 466
BstBI TTCGAA 1 cut(s) 421
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 3 cut(s) 171, 194, 480
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 107, 326
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 3 cut(s) 232, 268, 316
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuI GTATCC 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 103
CaiI CAGNNNCTG 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 428
CviAII CATG 1 cut(s) 203
CviJI RGCY 5 cut(s) 110, 193, 281, 320, 329
CviKI_1 RGCY 5 cut(s) 110, 193, 281, 320, 329
CviQI GTAC 1 cut(s) 428
DdeI CTNAG 3 cut(s) 171, 194, 480
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 18
FaeI CATG 1 cut(s) 206
FaiI YATR 6 cut(s) 23, 144, 154, 182, 204, 323
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 246, 282, 330
Fsp4HI GCNGC 3 cut(s) 246, 282, 330
FspBI CTAG 1 cut(s) 102
GluI GCNGC 3 cut(s) 246, 282, 330
HapII CCGG 1 cut(s) 270
Hin1II CATG 1 cut(s) 206
HinfI GANTC 2 cut(s) 114, 310
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 441
Hpy188I TCNGA 2 cut(s) 37, 174
Hpy188III TCNNGA 2 cut(s) 131, 367
Hpy8I GTNNAC 1 cut(s) 441
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 3 cut(s) 41, 375, 466
HpyCH4IV ACGT 3 cut(s) 10, 235, 430
HpyCH4V TGCA 4 cut(s) 15, 89, 284, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 326
HpyF3I CTNAG 3 cut(s) 171, 194, 480
HpySE526I ACGT 3 cut(s) 10, 235, 430
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 9 cut(s) 29, 35, 96, 144, 175, 270, 283, 372, 433
Lsp1109I GCAGC 3 cut(s) 232, 268, 316
LweI GCATC 2 cut(s) 217, 417
MaeI CTAG 1 cut(s) 102
MaeII ACGT 3 cut(s) 10, 235, 430
MaeIII GTNAC 2 cut(s) 55, 74
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 148
MluCI AATT 4 cut(s) 61, 84, 240, 474
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 1 cut(s) 168
MseI TTAA 2 cut(s) 306, 378
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 271
MwoI GCNNNNNNNGC 2 cut(s) 107, 326
NciI CCSGG 1 cut(s) 271
NdeII GATC 1 cut(s) 148
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 55, 74
NspV TTCGAA 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 427
PfeI GAWTC 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 3 cut(s) 247, 283, 331
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 429
RsaNI GTAC 1 cut(s) 428
SaqAI TTAA 2 cut(s) 306, 378
SatI GCNGC 3 cut(s) 246, 282, 330
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 18
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 271
SetI ASST 8 cut(s) 13, 48, 220, 238, 283, 361, 405, 433
SfaNI GCATC 2 cut(s) 217, 417
SfcI CTRYAG 1 cut(s) 282
SfuI TTCGAA 1 cut(s) 421
SinI GGWCC 1 cut(s) 18
Sse9I AATT 4 cut(s) 61, 84, 240, 474
SspI AATATT 1 cut(s) 339
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 3 cut(s) 41, 375, 466
TaiI ACGT 3 cut(s) 13, 238, 433
TaqI TCGA 2 cut(s) 80, 421
TasI AATT 4 cut(s) 61, 84, 240, 474
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 2 cut(s) 306, 378
Tru9I TTAA 2 cut(s) 306, 378
TscAI CASTG 1 cut(s) 358
TseFI GTSAC 2 cut(s) 55, 74
TseI GCWGC 3 cut(s) 245, 281, 329
Tsp45I GTSAC 2 cut(s) 55, 74
TspRI CASTG 1 cut(s) 358
VpaK11BI GGWCC 1 cut(s) 18
XapI RAATTY 1 cut(s) 474
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.