AT3G23600

Dienelactone hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000177
Physical Location & Seq
Forward (+)
8473627 .. 8476024
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23600.2

Sequence Viewer

Length: 720 bp
ATGTCGGGACCTCAGTGCTGTGAAAACCCGCCAACTCTTAACCCGGTTTCCGGGTCGGGTCATGTCGAGAAGCTGGGTGGGCTTGATGCCTACGTCTCCGGCTCTGCCGAGTCCAAGCTCTGCGTCCTCCTCATTTCTGATATTTTTGGTTTTGAAGCTCCAAACTTAAGGGCGCTTGCGGACAAGGTTGCAGCTTCTGGATTCTATGTTGTGGTTCCTGATTACTTTGGTGGAGATCCTTATAATCCCTCTAACCAGGACAGACCCATCCCTGTCTGGATCAAAGACCATGGCTGTGATAAGGGCTTTGAAAACACGAAACCAGTACTTGAAACCATAAAGAACAAAGGCATAACTGCCATTGGAGCCGCAGGGATGTGTTGGGGTGCAAAAGTAGTGGTGGAACTGTCTAAAGAAGAGCTTATTCAAGCAGCTGTGTTGCTTCATCCTTCTTTTGTCAATGTTGATGATATCAAAGGTGGGAAGGCTCCAATTGCTATATTAGGAGCTGAAATTGATCAAATGTCCCCACCAGCACTCTTGAAGCAATTTGAGGAGATTCTATCTTCCAAACCCGAGGTGAATAGTTACGTGAAGATACACCCGAAAGTGTCACACGGATGGACAGTTAGATACAACATCGATGAACCAGAGGCGGTTAAAGCAGCAGAAGAAGCTCACAAGGAGATGCTTGATTGGTTTGTGACCTACATCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

239

Amino Acids

25.86

Weight (kDa)

5.17

Isoelectric Point (pI)

34.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 28 - 234 2.5e-23 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AciI CCGC 4 cut(s) 29, 179, 369, 656
AclWI GGATC 2 cut(s) 230, 287
AfaI GTAC 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 50
AflII CTTAAG 1 cut(s) 166
AgsI TTSAA 5 cut(s) 155, 311, 332, 428, 544
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 8 cut(s) 73, 118, 158, 194, 421, 434, 509, 677
AluI AGCT 8 cut(s) 73, 118, 158, 194, 421, 434, 509, 677
Alw26I GTCTC 1 cut(s) 100
AlwI GGATC 2 cut(s) 230, 287
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 575
ApeKI GCWGC 3 cut(s) 191, 431, 665
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 8
AsuC2I CCSGG 2 cut(s) 44, 52
AsuHPI GGTGA 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 575
AvaII GGWCC 1 cut(s) 8
BbvI GCAGC 3 cut(s) 203, 443, 677
BccI CCATC 2 cut(s) 275, 615
BciT130I CCWGG 1 cut(s) 257
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 2 cut(s) 44, 52
BcoDI GTCTC 1 cut(s) 100
BfoI RGCGCY 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 166
BisI GCNGC 4 cut(s) 192, 369, 432, 666
BlsI GCNGC 4 cut(s) 193, 370, 433, 667
BmcAI AGTACT 1 cut(s) 327
Bme1390I CCNGG 3 cut(s) 44, 52, 257
Bme18I GGWCC 1 cut(s) 8
BmeT110I CYCGRG 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 4 cut(s) 9, 216, 367, 489
BmrFI CCNGG 3 cut(s) 44, 52, 257
BmsI GCATC 2 cut(s) 76, 678
BpuMI CCSGG 2 cut(s) 44, 52
Bsa29I ATCGAT 1 cut(s) 642
BsaAI YACGTR 1 cut(s) 592
BsaJI CCNNGG 2 cut(s) 289, 576
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 642
BseDI CCNNGG 2 cut(s) 289, 576
BseGI GGATG 4 cut(s) 267, 381, 445, 626
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 2 cut(s) 119, 569
BseXI GCAGC 3 cut(s) 203, 443, 677
BseYI CCCAGC 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 642
BsiHKCI CYCGRG 1 cut(s) 575
BsiSI CCGG 3 cut(s) 44, 51, 99
BslFI GGGAC 2 cut(s) 21, 511
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 100
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 21, 511
BsoBI CYCGRG 1 cut(s) 575
Bsp143I GATC 3 cut(s) 235, 279, 517
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 4 cut(s) 29, 179, 369, 656
BspCNI CTCAG 1 cut(s) 25
BspDI ATCGAT 1 cut(s) 642
BspLI GGNNCC 4 cut(s) 9, 216, 367, 489
BspPI GGATC 2 cut(s) 230, 287
BspQI GCTCTTC 1 cut(s) 411
BspTI CTTAAG 1 cut(s) 166
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 2 cut(s) 289, 576
BssMI GATC 3 cut(s) 235, 279, 517
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 408, 628
Bst6I CTCTTC 1 cut(s) 411
BstAFI CTTAAG 1 cut(s) 166
BstBAI YACGTR 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 4 cut(s) 267, 381, 445, 626
BstH2I RGCGCY 1 cut(s) 176
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 3 cut(s) 238, 282, 520
BstMAI GTCTC 1 cut(s) 100
BstMBI GATC 3 cut(s) 235, 279, 517
BstMWI GCNNNNNNNGC 5 cut(s) 79, 365, 494, 662, 674
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 3 cut(s) 42, 50, 255
BstV1I GCAGC 3 cut(s) 203, 443, 677
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
Bsu15I ATCGAT 1 cut(s) 642
BsuTUI ATCGAT 1 cut(s) 642
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 4 cut(s) 267, 381, 445, 626
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 642
CseI GACGC 1 cut(s) 112
Csp6I GTAC 1 cut(s) 326
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 2 cut(s) 62, 290
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 237, 281, 519
DpnII GATC 3 cut(s) 235, 279, 517
Eam1104I CTCTTC 1 cut(s) 411
EarI CTCTTC 1 cut(s) 411
Eco130I CCWWGG 1 cut(s) 289
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 255
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 2 cut(s) 65, 293
FaiI YATR 7 cut(s) 63, 207, 243, 291, 338, 353, 500
FalI AAGNNNNNCTT 2 cut(s) 405, 437
FaqI GGGAC 2 cut(s) 21, 511
FatI CATG 2 cut(s) 61, 289
FauI CCCGC 1 cut(s) 36
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 4 cut(s) 192, 369, 432, 666
FokI GGATG 4 cut(s) 254, 388, 432, 633
Fsp4HI GCNGC 4 cut(s) 192, 369, 432, 666
GlaI GCGC 1 cut(s) 174
GluI GCNGC 4 cut(s) 192, 369, 432, 666
GsaI CCCAGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 176
HapII CCGG 3 cut(s) 44, 51, 99
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 175
Hin1II CATG 2 cut(s) 65, 293
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 3 cut(s) 110, 201, 559
HpaII CCGG 3 cut(s) 44, 51, 99
HphI GGTGA 1 cut(s) 592
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 6 cut(s) 6, 67, 198, 218, 277, 541
HpyAV CCTTC 2 cut(s) 459, 478
HpyCH4III ACNGT 2 cut(s) 408, 628
HpyCH4IV ACGT 2 cut(s) 93, 591
HpyCH4V TGCA 2 cut(s) 191, 389
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 365, 494, 662, 674
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 93, 591
Hsp92II CATG 2 cut(s) 65, 293
HspAI GCGC 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 3 cut(s) 235, 279, 517
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 4 cut(s) 163, 365, 493, 506
Lsp1109I GCAGC 3 cut(s) 203, 443, 677
LweI GCATC 2 cut(s) 76, 678
MaeII ACGT 2 cut(s) 93, 591
MaeIII GTNAC 3 cut(s) 587, 612, 703
MalI GATC 3 cut(s) 237, 281, 519
MboI GATC 3 cut(s) 235, 279, 517
MboII GAAGA 4 cut(s) 428, 558, 607, 683
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 1 cut(s) 235
MluCI AATT 3 cut(s) 492, 513, 548
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 7 cut(s) 21, 137, 140, 259, 547, 571, 646
MseI TTAA 3 cut(s) 39, 167, 660
MslI CAYNNNNRTG 2 cut(s) 294, 619
MspA1I CMGCKG 1 cut(s) 434
MspCI CTTAAG 1 cut(s) 166
MspI CCGG 3 cut(s) 44, 51, 99
MspR9I CCNGG 3 cut(s) 44, 52, 257
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 5 cut(s) 79, 365, 494, 662, 674
NciI CCSGG 2 cut(s) 44, 52
NcoI CCATGG 1 cut(s) 289
NdeII GATC 3 cut(s) 235, 279, 517
NlaIII CATG 2 cut(s) 65, 293
NlaIV GGNNCC 4 cut(s) 9, 216, 367, 489
NmeAIII GCCGAG 1 cut(s) 133
NmuCI GTSAC 2 cut(s) 612, 703
PciSI GCTCTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 201, 559
PkrI GCNGC 4 cut(s) 193, 370, 433, 667
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 592
PpuMI RGGWCCY 1 cut(s) 8
PsiI TTATAA 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 255
PspFI CCCAGC 1 cut(s) 73
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 4 cut(s) 9, 216, 367, 489
PspPI GGNCC 1 cut(s) 8
PspPPI RGGWCCY 1 cut(s) 8
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 1 cut(s) 235
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 2 cut(s) 294, 619
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 3 cut(s) 39, 167, 660
SatI GCNGC 4 cut(s) 192, 369, 432, 666
Sau3AI GATC 3 cut(s) 235, 279, 517
Sau96I GGNCC 1 cut(s) 8
ScaI AGTACT 1 cut(s) 327
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 3 cut(s) 44, 52, 257
SfaNI GCATC 2 cut(s) 76, 678
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 2 cut(s) 294, 619
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 3 cut(s) 492, 513, 548
SsiI CCGC 4 cut(s) 29, 179, 369, 656
StyD4I CCNGG 3 cut(s) 42, 50, 255
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 408, 628
TaiI ACGT 2 cut(s) 96, 594
TaqI TCGA 2 cut(s) 66, 642
TasI AATT 3 cut(s) 492, 513, 548
TatI WGTACW 1 cut(s) 325
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 2 cut(s) 201, 559
Tru1I TTAA 3 cut(s) 39, 167, 660
Tru9I TTAA 3 cut(s) 39, 167, 660
TscAI CASTG 1 cut(s) 20
TseFI GTSAC 2 cut(s) 612, 703
TseI GCWGC 3 cut(s) 191, 431, 665
Tsp45I GTSAC 2 cut(s) 612, 703
TspDTI ATGAA 2 cut(s) 434, 660
TspGWI ACGGA 1 cut(s) 633
TspRI CASTG 1 cut(s) 20
Vha464I CTTAAG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 8
ZrmI AGTACT 1 cut(s) 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.