Rroxscaffold_5G00361910

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000177
Physical Location & Seq
Forward (+)
42655645 .. 42656476
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361910.1

Sequence Viewer

Length: 180 bp
ATGTCAGGCCCTCAGTGCTGCTCGAACCCACCGACCCTGAACCCAACCAGTGGATCTGGCCACGTTGAGAAGCTTGGTGGTCTCGACTCCTATCTCACTGGCTCTCCCAACTCCAAGCTTGCCATTGTTCTTGTCTCTGACGTTTATGGGTATAATGCTCCAAACTTGAGGTATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

59

Amino Acids

6.16

Weight (kDa)

5.5

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AclWI GGATC 1 cut(s) 61
AcoI YGGCCR 1 cut(s) 58
AfiI CCNNNNNNNGG 1 cut(s) 50
AluBI AGCT 2 cut(s) 73, 118
AluI AGCT 2 cut(s) 73, 118
Alw26I GTCTC 2 cut(s) 86, 139
AlwI GGATC 1 cut(s) 61
AoxI GGCC 2 cut(s) 7, 58
ApeKI GCWGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 60
BbvI GCAGC 1 cut(s) 5
BcoDI GTCTC 2 cut(s) 86, 139
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BmgT120I GGNCC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 2 cut(s) 48, 103
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 2 cut(s) 48, 103
BseXI GCAGC 1 cut(s) 5
BshFI GGCC 2 cut(s) 9, 60
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 86, 139
BsnI GGCC 2 cut(s) 9, 60
Bso31I GGTCTC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 53
BspANI GGCC 2 cut(s) 9, 60
BspCNI CTCAG 1 cut(s) 25
BspPI GGATC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 86
BsrI ACTGG 2 cut(s) 48, 103
BssMI GATC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 2 cut(s) 86, 139
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 5
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
BsuRI GGCC 2 cut(s) 9, 60
BtsIMutI CAGTG 3 cut(s) 20, 55, 96
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 8
CviJI RGCY 5 cut(s) 9, 60, 73, 102, 118
CviKI_1 RGCY 5 cut(s) 9, 60, 73, 102, 118
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 58
Eco31I GGTCTC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 8
FaiI YATR 3 cut(s) 147, 153, 174
Fnu4HI GCNGC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 2 cut(s) 9, 60
HindIII AAGCTT 2 cut(s) 71, 116
HinfI GANTC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 1 cut(s) 83
HpyCH4IV ACGT 2 cut(s) 63, 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 63, 141
Kzo9I GATC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 4 cut(s) 42, 50, 61, 84
Lsp1109I GCAGC 1 cut(s) 5
MaeII ACGT 2 cut(s) 63, 141
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MflI RGATCY 1 cut(s) 53
MlsI TGGCCA 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 2 cut(s) 21, 162
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 60
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 53
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 1 cut(s) 80
SetI ASST 5 cut(s) 66, 75, 120, 144, 173
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
TaiI ACGT 2 cut(s) 66, 144
TaqI TCGA 2 cut(s) 23, 84
TscAI CASTG 3 cut(s) 20, 55, 103
TseI GCWGC 1 cut(s) 18
TspRI CASTG 3 cut(s) 20, 55, 103
Van91I CCANNNNNTGG 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.