Rmu_sc0000363.1_g000035

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000363.1
OG0000177
Physical Location & Seq
Reverse (-)
149589 .. 152107
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000363.1_g000035.1.cds

Sequence Viewer

Length: 393 bp
atgatcactttgtgccgtcaaggtgtttctgcaataggagctgcaggattttgctggggagggaatgtagtggccaaacttgcaaaatctgatgacattaaggccgctgtgatattgcaccctggccggttagcagatgaagatgtacatgaggttaaggttcatactgcaatattgggagctgagattgataaatatgcccccccagaacatttgaaacaaattggggagattttatcagtgaagtctgagtttgatagctttgtgaaaatatttcctggagtggctcatggatggacaataagctacaatgcggaggatgaatctgcagtcaagcgtgctgaagaggctcaattggacatgttaaattggtttaccaagtatgtcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

130

Amino Acids

14.22

Weight (kDa)

5.69

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 105, 314
AcoI YGGCCR 2 cut(s) 72, 124
AcuI CTGAAG 1 cut(s) 363
AdeI CACNNNGTG 1 cut(s) 12
AfaI GTAC 1 cut(s) 147
AflIII ACRYGT 1 cut(s) 360
AgsI TTSAA 1 cut(s) 217
AjnI CCWGG 2 cut(s) 121, 277
AluBI AGCT 4 cut(s) 41, 182, 261, 306
AluI AGCT 4 cut(s) 41, 182, 261, 306
AoxI GGCC 3 cut(s) 72, 102, 124
ApeKI GCWGC 1 cut(s) 41
BalI TGGCCA 1 cut(s) 74
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 288
BciT130I CCWGG 2 cut(s) 123, 279
BclI TGATCA 1 cut(s) 3
BfmI CTRYAG 2 cut(s) 42, 327
BisI GCNGC 2 cut(s) 42, 105
BlsI GCNGC 2 cut(s) 43, 106
Bme1390I CCNGG 2 cut(s) 123, 279
BmrFI CCNGG 2 cut(s) 123, 279
BpmI CTGGAG 1 cut(s) 300
BsaJI CCNNGG 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse118I RCCGGY 1 cut(s) 126
BseBI CCWGG 2 cut(s) 123, 279
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 299, 325
BseMII CTCAG 2 cut(s) 174, 240
BseXI GCAGC 1 cut(s) 28
BseYI CCCAGC 1 cut(s) 54
BshFI GGCC 3 cut(s) 74, 104, 126
BsiSI CCGG 1 cut(s) 127
BsnI GGCC 3 cut(s) 74, 104, 126
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 2 cut(s) 105, 314
BspANI GGCC 3 cut(s) 74, 104, 126
BspCNI CTCAG 2 cut(s) 175, 241
BspMAI CTGCAG 2 cut(s) 46, 331
BsrFI RCCGGY 1 cut(s) 126
BsrGI TGTACA 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 2 cut(s) 123, 279
Bst6I CTCTTC 1 cut(s) 339
BstAUI TGTACA 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 183, 249
BstF5I GGATG 2 cut(s) 299, 325
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 3 cut(s) 38, 80, 347
BstNI CCWGG 2 cut(s) 123, 279
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 121, 277
BstSFI CTRYAG 2 cut(s) 42, 327
BstV1I GCAGC 1 cut(s) 28
BsuRI GGCC 3 cut(s) 74, 104, 126
BtsCI GGATG 2 cut(s) 299, 325
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 339
Cfr10I RCCGGY 1 cut(s) 126
Csp6I GTAC 1 cut(s) 146
CviAII CATG 3 cut(s) 149, 290, 361
CviJI RGCY 9 cut(s) 41, 74, 104, 126, 182, 261, 287, 306, 350
CviKI_1 RGCY 9 cut(s) 41, 74, 104, 126, 182, 261, 287, 306, 350
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 2 cut(s) 183, 249
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
DraIII CACNNNGTG 1 cut(s) 12
EaeI YGGCCR 2 cut(s) 72, 124
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 121, 277
FaeI CATG 3 cut(s) 152, 293, 364
FaiI YATR 6 cut(s) 150, 165, 198, 291, 362, 384
FatI CATG 3 cut(s) 148, 289, 360
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 42, 105
FokI GGATG 2 cut(s) 306, 332
Fsp4HI GCNGC 2 cut(s) 42, 105
GluI GCNGC 2 cut(s) 42, 105
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 300
HaeIII GGCC 3 cut(s) 74, 104, 126
HapII CCGG 1 cut(s) 127
Hin1II CATG 3 cut(s) 152, 293, 364
HinfI GANTC 1 cut(s) 323
HpaII CCGG 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 2 cut(s) 91, 250
Hpy8I GTNNAC 1 cut(s) 375
HpyCH4V TGCA 6 cut(s) 32, 44, 83, 118, 170, 329
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 80, 347
HpyF3I CTNAG 2 cut(s) 183, 249
Hsp92II CATG 3 cut(s) 152, 293, 364
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 38, 179
LpnPI CCDG 8 cut(s) 30, 40, 108, 135, 140, 219, 264, 291
Lsp1109I GCAGC 1 cut(s) 28
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 2 cut(s) 152, 356
MfeI CAATTG 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 74
MluCI AATT 3 cut(s) 222, 353, 367
MluNI TGGCCA 1 cut(s) 74
MnlI CCTC 4 cut(s) 53, 145, 310, 340
Mox20I TGGCCA 1 cut(s) 74
MscI TGGCCA 1 cut(s) 74
MseI TTAA 3 cut(s) 99, 156, 365
Msp20I TGGCCA 1 cut(s) 74
MspA1I CMGCKG 1 cut(s) 107
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 123, 279
MunI CAATTG 1 cut(s) 353
MvaI CCWGG 2 cut(s) 123, 279
MwoI GCNNNNNNNGC 3 cut(s) 38, 80, 347
NdeII GATC 1 cut(s) 3
NlaIII CATG 3 cut(s) 152, 293, 364
NspI RCATGY 1 cut(s) 364
PciI ACATGT 1 cut(s) 360
PfeI GAWTC 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 2 cut(s) 43, 106
PscI ACATGT 1 cut(s) 360
Psp6I CCWGG 2 cut(s) 121, 277
PspFI CCCAGC 1 cut(s) 54
PspGI CCWGG 2 cut(s) 121, 277
PstI CTGCAG 2 cut(s) 46, 331
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
SaqAI TTAA 3 cut(s) 99, 156, 365
SatI GCNGC 2 cut(s) 42, 105
Sau3AI GATC 1 cut(s) 3
ScrFI CCNGG 2 cut(s) 123, 279
SetI ASST 7 cut(s) 25, 43, 156, 162, 184, 263, 308
SfcI CTRYAG 2 cut(s) 42, 327
Sse9I AATT 3 cut(s) 222, 353, 367
SsiI CCGC 2 cut(s) 105, 314
SspI AATATT 2 cut(s) 174, 273
StyD4I CCNGG 2 cut(s) 121, 277
TasI AATT 3 cut(s) 222, 353, 367
TatI WGTACW 1 cut(s) 145
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 3 cut(s) 99, 156, 365
Tru9I TTAA 3 cut(s) 99, 156, 365
TscAI CASTG 1 cut(s) 246
TseI GCWGC 1 cut(s) 41
TspDTI ATGAA 3 cut(s) 152, 153, 336
TspRI CASTG 1 cut(s) 246
XceI RCATGY 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.