Rh4DG215200

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000177
Physical Location & Seq
Forward (+)
41440531 .. 41448603
8073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG215200.1

Sequence Viewer

Length: 252 bp
ATGAGGAAACTTGCGGATAAAGTTGCTGCAGCTGGATTTTTCGTGGTGGTTCCCGATTTCTTTTATGGCGACCCTGTGAATCTTGATAATCCTCAATTCGACCGAGAGTACTGGTTTAAAGCTCACAGCAAGGAAAAAGGATACGTGGATGCCAAACATGTCCTTGCTGCTTTAAAGAGTCAAGGTGTTTCTGCAAGAGGTGCTGCAGCATTTTGCTGGGGAGGTAAACCCTTCAAGCTTGGGACGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

83

Amino Acids

9.18

Weight (kDa)

9.37

Isoelectric Point (pI)

3.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 2 - 76 1.2e-07 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AfaI GTAC 1 cut(s) 110
AflIII ACRYGT 1 cut(s) 157
AgsI TTSAA 1 cut(s) 235
AluBI AGCT 3 cut(s) 32, 122, 238
AluI AGCT 3 cut(s) 32, 122, 238
ApeKI GCWGC 5 cut(s) 26, 29, 167, 203, 206
BbvI GCAGC 5 cut(s) 13, 41, 154, 190, 218
BciVI GTATCC 1 cut(s) 134
BfaI CTAG 1 cut(s) 250
BfmI CTRYAG 2 cut(s) 27, 204
BfuI GTATCC 1 cut(s) 134
BisI GCNGC 5 cut(s) 27, 30, 168, 204, 207
BlsI GCNGC 5 cut(s) 28, 31, 169, 205, 208
BmcAI AGTACT 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 154
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 5 cut(s) 13, 41, 154, 190, 218
BseYI CCCAGC 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 103
BspACI CCGC 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 2 cut(s) 31, 208
BsrI ACTGG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 145
BstF5I GGATG 1 cut(s) 154
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 200, 244
BstNSI RCATGY 1 cut(s) 161
BstSFI CTRYAG 2 cut(s) 27, 204
BstV1I GCAGC 5 cut(s) 13, 41, 154, 190, 218
BsuI GTATCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 154
Csp6I GTAC 1 cut(s) 109
CviAII CATG 1 cut(s) 158
CviJI RGCY 3 cut(s) 32, 122, 238
CviKI_1 RGCY 3 cut(s) 32, 122, 238
CviQI GTAC 1 cut(s) 109
DraI TTTAAA 2 cut(s) 118, 174
FaeI CATG 1 cut(s) 161
FaiI YATR 2 cut(s) 66, 159
FatI CATG 1 cut(s) 157
Fnu4HI GCNGC 5 cut(s) 27, 30, 168, 204, 207
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 5 cut(s) 27, 30, 168, 204, 207
FspBI CTAG 1 cut(s) 250
GluI GCNGC 5 cut(s) 27, 30, 168, 204, 207
GsaI CCCAGC 1 cut(s) 220
Hin1II CATG 1 cut(s) 161
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 2 cut(s) 79, 178
Hpy166II GTNNAC 1 cut(s) 227
Hpy188III TCNNGA 2 cut(s) 53, 83
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 29, 194, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 244
HpySE526I ACGT 1 cut(s) 144
Hsp92II CATG 1 cut(s) 161
LpnPI CCDG 4 cut(s) 18, 87, 97, 202
Lsp1109I GCAGC 5 cut(s) 13, 41, 154, 190, 218
LweI GCATC 1 cut(s) 139
MaeI CTAG 1 cut(s) 250
MaeII ACGT 1 cut(s) 144
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 3 cut(s) 102, 191, 215
MseI TTAA 2 cut(s) 117, 173
MspA1I CMGCKG 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 200, 244
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 51
NspI RCATGY 1 cut(s) 161
PciI ACATGT 1 cut(s) 157
PfeI GAWTC 1 cut(s) 79
PkrI GCNGC 5 cut(s) 28, 31, 169, 205, 208
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Ppu21I YACGTR 1 cut(s) 145
PscI ACATGT 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 51
PstI CTGCAG 2 cut(s) 31, 208
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 2 cut(s) 117, 173
SatI GCNGC 5 cut(s) 27, 30, 168, 204, 207
ScaI AGTACT 1 cut(s) 110
SchI GAGTC 1 cut(s) 187
SetI ASST 7 cut(s) 34, 124, 147, 187, 202, 226, 240
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 2 cut(s) 27, 204
Sse9I AATT 1 cut(s) 95
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 250
TaiI ACGT 1 cut(s) 147
TaqI TCGA 1 cut(s) 99
TaqII GACCGA 1 cut(s) 117
TasI AATT 1 cut(s) 95
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 2 cut(s) 117, 173
Tru9I TTAA 2 cut(s) 117, 173
TseI GCWGC 5 cut(s) 26, 29, 167, 203, 206
XceI RCATGY 1 cut(s) 161
XspI CTAG 1 cut(s) 250
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.