Rroxscaffold_5G00361930

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000177
Physical Location & Seq
Forward (+)
42660069 .. 42673231
13163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361930.1

Sequence Viewer

Length: 903 bp
ATGTCAGGCCCTGCGTGCTGCTCAAACCCTCCAGCCCTTAACCCAGCAAGTGGCTCCGGCCATGTTGAAAAGCTTGCTGGTCTGGACTCCTATGTCACTGGCTCTCCTGACTCCAAGCTTGCCGTTCTTCTCATTGCTGACATTTTTGGCTATGAAGCTCCACTCTTGAGGAAGCTCGCAGACAAAGTTGCAGCTGCTGGGTTCTTTGTTGTGGTACCTGATTTCTTTTATGGAGATGCTTTTCCTGGTGATGCTGGACCAGTTGGAAACTCTTCTGCTCTACCTATTTGGTTAAAGACACATTTACCGATCAAGGCATCTGAAGCTGCAAAACCATTACTTGAAGCCTTAAAGAGTAAAGGTGTTTCTGCAATTGGGGCTGTAGGCTTCTGTTGGGGAGCCAAGGCTGCGGTTGAACTTGCAAAGTATGATGACCTTCTCCATGCTGCTGTGTTGTGCCATCCTTCATTCGTCACTGTGGACGATTTCAAGGCGGTTAAGGTTCCCATTTCTGTACTTGGAGCTGAGATTGATTCGATTTCGCCACCTGACGTCGTGAAACAATTTGAAGAGGTTTTAACTGCAAGACCTGAGATCAGAAGCCATGTGAAGATATTCCCAAAAGTGCAACATGGGTGGACCGTGAGGTACAACGCTGAAGATGAGGCCGCTGTTAAGTGTGCTGAGGAGGCTCATCAAGACATACTGGATTGTTCTTATTGTATTGATACCAATGTAGTAGAAGAATCTGCCACTGCAAGGGATTTTGGAGGAGAAGACAAGCAAGGCTTTGGTGGCATCTACAAGAACTCAACACTCTCTTCCAACATTTCTATGACTCGTTTCATGGATGGTCGGTTTGAAGGGTCCATCATGGGTTCAAAATTCAAATTGAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

300

Amino Acids

31.94

Weight (kDa)

5.54

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 29 - 232 4.7e-29 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
AatII GACGTC 1 cut(s) 555
Acc65I GGTACC 1 cut(s) 214
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 50
AciI CCGC 3 cut(s) 410, 494, 669
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 884
AcuI CTGAAG 2 cut(s) 342, 678
AcyI GRCGYC 1 cut(s) 552
AfaI GTAC 3 cut(s) 216, 516, 650
AfiI CCNNNNNNNGG 2 cut(s) 50, 759
AgsI TTSAA 9 cut(s) 68, 344, 416, 490, 569, 863, 882, 889, 895
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 7 cut(s) 73, 118, 158, 175, 194, 326, 524
AluI AGCT 7 cut(s) 73, 118, 158, 175, 194, 326, 524
AlwNI CAGNNNCTG 2 cut(s) 11, 197
AoxI GGCC 3 cut(s) 7, 58, 666
ApeKI GCWGC 6 cut(s) 18, 191, 194, 326, 407, 446
ApoI RAATTY 1 cut(s) 884
Asp700I GAANNNNTTC 2 cut(s) 271, 614
Asp718I GGTACC 1 cut(s) 214
AspS9I GGNCC 4 cut(s) 8, 257, 639, 867
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 3 cut(s) 257, 639, 867
BaeI ACNNNNGTAYC 2 cut(s) 720, 753
BanI GGYRCC 1 cut(s) 214
BbsI GAAGAC 1 cut(s) 783
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 6 cut(s) 5, 181, 203, 313, 394, 433
BccI CCATC 3 cut(s) 468, 845, 878
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
BlsI GCNGC 7 cut(s) 20, 193, 196, 328, 409, 448, 670
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 3 cut(s) 257, 639, 867
BmgT120I GGNCC 4 cut(s) 8, 257, 639, 867
BmiI GGNNCC 5 cut(s) 55, 216, 400, 504, 868
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 4 cut(s) 226, 241, 326, 807
BpiI GAAGAC 1 cut(s) 783
BpmI CTGGAG 1 cut(s) 15
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 552
BsaJI CCNNGG 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 759
Bse1I ACTGG 3 cut(s) 103, 260, 711
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 402
BseGI GGATG 2 cut(s) 460, 856
BseLI CCNNNNNNNGG 2 cut(s) 50, 759
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 516, 582, 675
BseNI ACTGG 3 cut(s) 103, 260, 711
BseRI GAGGAG 2 cut(s) 701, 786
BseXI GCAGC 6 cut(s) 5, 181, 203, 313, 394, 433
BseYI CCCAGC 2 cut(s) 43, 197
BshFI GGCC 3 cut(s) 9, 60, 668
BshNI GGYRCC 1 cut(s) 214
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 2 cut(s) 50, 759
BsnI GGCC 3 cut(s) 9, 60, 668
Bsp143I GATC 2 cut(s) 309, 594
BspACI CCGC 3 cut(s) 410, 494, 669
BspANI GGCC 3 cut(s) 9, 60, 668
BspCNI CTCAG 3 cut(s) 517, 583, 676
BspLI GGNNCC 5 cut(s) 55, 216, 400, 504, 868
BspT107I GGYRCC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 3 cut(s) 103, 260, 711
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 2 cut(s) 309, 594
BssNI GRCGYC 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 2 cut(s) 478, 643
Bst6I CTCTTC 3 cut(s) 277, 564, 826
BstACI GRCGYC 1 cut(s) 552
BstC8I GCNNGC 4 cut(s) 16, 75, 120, 177
BstDEI CTNAG 3 cut(s) 525, 591, 684
BstF5I GGATG 2 cut(s) 460, 856
BstKTI GATC 2 cut(s) 312, 597
BstMBI GATC 2 cut(s) 309, 594
BstMWI GCNNNNNNNGC 6 cut(s) 15, 323, 377, 407, 689, 795
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 6 cut(s) 5, 181, 203, 313, 394, 433
BstV2I GAAGAC 1 cut(s) 783
BsuRI GGCC 3 cut(s) 9, 60, 668
BtsCI GGATG 2 cut(s) 460, 856
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 3 cut(s) 96, 474, 753
Cac8I GCNNGC 4 cut(s) 16, 75, 120, 177
CaiI CAGNNNCTG 2 cut(s) 11, 197
Cfr13I GGNCC 4 cut(s) 8, 257, 639, 867
Csp6I GTAC 3 cut(s) 215, 515, 649
CspCI CAANNNNNGTGG 2 cut(s) 617, 652
CviAII CATG 6 cut(s) 62, 443, 605, 632, 847, 874
CviQI GTAC 3 cut(s) 215, 515, 649
DdeI CTNAG 3 cut(s) 525, 591, 684
DpnI GATC 2 cut(s) 311, 596
DpnII GATC 2 cut(s) 309, 594
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 3 cut(s) 277, 564, 826
EarI CTCTTC 3 cut(s) 277, 564, 826
Eco130I CCWWGG 1 cut(s) 402
Eco47I GGWCC 3 cut(s) 257, 639, 867
Eco57I CTGAAG 2 cut(s) 342, 678
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 6 cut(s) 65, 446, 608, 635, 850, 877
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FatI CATG 6 cut(s) 61, 442, 604, 631, 846, 873
Fnu4HI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
FokI GGATG 2 cut(s) 447, 863
Fsp4HI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
GluI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
GsaI CCCAGC 2 cut(s) 47, 201
GsuI CTGGAG 1 cut(s) 15
HaeIII GGCC 3 cut(s) 9, 60, 668
HapII CCGG 1 cut(s) 57
Hin1I GRCGYC 1 cut(s) 552
Hin1II CATG 6 cut(s) 65, 446, 608, 635, 850, 877
HindIII AAGCTT 2 cut(s) 71, 116
HinfI GANTC 5 cut(s) 86, 110, 533, 746, 838
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 481, 639
Hpy188I TCNGA 2 cut(s) 322, 599
Hpy188III TCNNGA 5 cut(s) 83, 107, 166, 556, 698
Hpy8I GTNNAC 2 cut(s) 481, 639
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 3 cut(s) 446, 474, 857
HpyCH4III ACNGT 2 cut(s) 478, 643
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 7 cut(s) 191, 329, 371, 422, 584, 628, 758
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 323, 377, 407, 689, 795
HpyF3I CTNAG 3 cut(s) 525, 591, 684
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 1 cut(s) 552
Hsp92II CATG 6 cut(s) 65, 446, 608, 635, 850, 877
KpnI GGTACC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 309, 594
LmnI GCTCC 4 cut(s) 59, 163, 398, 521
Lsp1109I GCAGC 6 cut(s) 5, 181, 203, 313, 394, 433
LweI GCATC 4 cut(s) 226, 241, 326, 807
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 2 cut(s) 94, 472
MalI GATC 2 cut(s) 311, 596
MboI GATC 2 cut(s) 309, 594
MboII GAAGA 8 cut(s) 119, 264, 581, 622, 671, 755, 788, 813
MfeI CAATTG 1 cut(s) 372
MluCI AATT 4 cut(s) 372, 563, 884, 890
MlyI GAGTC 3 cut(s) 80, 104, 832
MmeI TCCRAC 2 cut(s) 244, 849
MnlI CCTC 8 cut(s) 39, 162, 565, 639, 658, 679, 682, 764
MroXI GAANNNNTTC 2 cut(s) 271, 614
MseI TTAA 6 cut(s) 39, 293, 350, 498, 578, 675
MslI CAYNNNNRTG 1 cut(s) 833
MspA1I CMGCKG 2 cut(s) 194, 671
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 246
MwoI GCNNNNNNNGC 6 cut(s) 15, 323, 377, 407, 689, 795
NdeII GATC 2 cut(s) 309, 594
NlaIII CATG 6 cut(s) 65, 446, 608, 635, 850, 877
NlaIV GGNNCC 5 cut(s) 55, 216, 400, 504, 868
NmuCI GTSAC 2 cut(s) 94, 472
PdmI GAANNNNTTC 2 cut(s) 271, 614
PfeI GAWTC 2 cut(s) 533, 746
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 7 cut(s) 20, 193, 196, 328, 409, 448, 670
PleI GAGTC 3 cut(s) 80, 104, 832
PpsI GAGTC 3 cut(s) 80, 104, 832
Psp6I CCWGG 1 cut(s) 244
PspFI CCCAGC 2 cut(s) 43, 197
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 5 cut(s) 55, 216, 400, 504, 868
PspPI GGNCC 4 cut(s) 8, 257, 639, 867
PstNI CAGNNNCTG 2 cut(s) 11, 197
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 3 cut(s) 216, 516, 650
RsaNI GTAC 3 cut(s) 215, 515, 649
RseI CAYNNNNRTG 1 cut(s) 833
SaqAI TTAA 6 cut(s) 39, 293, 350, 498, 578, 675
SatI GCNGC 7 cut(s) 19, 192, 195, 327, 408, 447, 669
Sau3AI GATC 2 cut(s) 309, 594
Sau96I GGNCC 4 cut(s) 8, 257, 639, 867
SchI GAGTC 3 cut(s) 80, 104, 832
ScrFI CCNGG 1 cut(s) 246
SfaNI GCATC 4 cut(s) 226, 241, 326, 807
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 3 cut(s) 257, 639, 867
SmiMI CAYNNNNRTG 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 4 cut(s) 372, 563, 884, 890
SsiI CCGC 3 cut(s) 410, 494, 669
StyD4I CCNGG 1 cut(s) 244
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 2 cut(s) 478, 643
TaiI ACGT 1 cut(s) 555
TaqI TCGA 1 cut(s) 536
TasI AATT 4 cut(s) 372, 563, 884, 890
TatI WGTACW 1 cut(s) 514
TauI GCSGC 1 cut(s) 671
TfiI GAWTC 2 cut(s) 533, 746
Tru1I TTAA 6 cut(s) 39, 293, 350, 498, 578, 675
Tru9I TTAA 6 cut(s) 39, 293, 350, 498, 578, 675
TscAI CASTG 3 cut(s) 103, 481, 760
TseFI GTSAC 2 cut(s) 94, 472
TseI GCWGC 6 cut(s) 18, 191, 194, 326, 407, 446
Tsp45I GTSAC 2 cut(s) 94, 472
TspDTI ATGAA 3 cut(s) 168, 456, 835
TspRI CASTG 3 cut(s) 103, 481, 760
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 3 cut(s) 257, 639, 867
XapI RAATTY 1 cut(s) 884
XmnI GAANNNNTTC 2 cut(s) 271, 614
ZraI GACGTC 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.