RchiOBHm_Chr4g0418671

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000177
Physical Location & Seq
Forward (+)
44135652 .. 44139020
3369 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38865

Sequence Viewer

Length: 687 bp
ATGTCAACTTCTGCGGCTTGCTTCGAGAACCCACCAACACTAAGCTCAACATACGGACAAGGAACTGTCCTAGAATTTGGGGGCCTGAAGAACTACGTTACTGGCTCAACTGAATCTAAACTTGCAGTCCTTCTAGTCTCCGATGTTTTTGGATATGAAAACCCAAATTTAAGGAAACTTGCGGATAAACTTGATGCAGCTAGATTTTTCGTGGTGGTTCCCGATTTCTTTTATGGCGACCCTGTGAATCTTGATAATCCTCAATTCGACCGAGAGTCCTGGTTTAAAGCTCACAGCAAGTGTCAAGGTGTTTCTGCAATAGGAGCTGCAGGATTTTGCTGGGGAGGGGTTGTAGTCGCAAAACTTGCAAAATCTGATGACATTAAGGCTGCTGTGATATTGCATCCTGGCCGGTTAGCAGATGAAGATATACATGATAAGTTTCATGTTAAGATTCATACTGCAATATTGGGAGCTGAGATTGACAAAACTTCACCCCCGGAACAATTGAAACAATTTGGGGAGATTTTATCAGTAAAGTCTGAGTTTGATAGCTTTGTGAAAATATTTCCTGGAGTGGCTCATGGATGGACAATGAGGTACAATGCAGAGGATGAATCTGCAGTCAAGAGTGCTGAAGAGGCTCATTTGGACATGTTAAATTGGTTTACCAAGTATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

228

Amino Acids

25.08

Weight (kDa)

5.49

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 31 - 226 3.8e-20 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 182
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 2 cut(s) 74, 166
AcuI CTGAAG 2 cut(s) 107, 657
AfaI GTAC 1 cut(s) 602
AflIII ACRYGT 1 cut(s) 654
AgsI TTSAA 1 cut(s) 511
AhdI GACNNNNNGTC 1 cut(s) 274
AjnI CCWGG 3 cut(s) 278, 406, 571
AluBI AGCT 6 cut(s) 45, 200, 290, 326, 476, 555
AluI AGCT 6 cut(s) 45, 200, 290, 326, 476, 555
Alw26I GTCTC 1 cut(s) 142
AoxI GGCC 2 cut(s) 82, 409
ApeKI GCWGC 3 cut(s) 197, 326, 389
ApoI RAATTY 2 cut(s) 74, 166
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 486
BbvI GCAGC 3 cut(s) 209, 313, 376
BccI CCATC 1 cut(s) 582
BciT130I CCWGG 3 cut(s) 280, 408, 573
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 3 cut(s) 71, 134, 201
BfmI CTRYAG 2 cut(s) 327, 621
BisI GCNGC 4 cut(s) 15, 198, 327, 390
BlsI GCNGC 4 cut(s) 16, 199, 328, 391
Bme1390I CCNGG 4 cut(s) 280, 408, 500, 573
BmeRI GACNNNNNGTC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 83, 219
BmrFI CCNGG 4 cut(s) 280, 408, 500, 573
BmsI GCATC 2 cut(s) 184, 412
BpmI CTGGAG 1 cut(s) 594
BpuMI CCSGG 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bse118I RCCGGY 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 3 cut(s) 280, 408, 573
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 3 cut(s) 403, 593, 619
BseMII CTCAG 2 cut(s) 468, 534
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 3 cut(s) 209, 313, 376
BseYI CCCAGC 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 2 cut(s) 84, 411
BsiEI CGRYCG 1 cut(s) 271
BsiSI CCGG 2 cut(s) 412, 500
BsmAI GTCTC 1 cut(s) 142
BsnI GGCC 2 cut(s) 84, 411
BspACI CCGC 2 cut(s) 14, 182
BspANI GGCC 2 cut(s) 84, 411
BspCNI CTCAG 2 cut(s) 469, 535
BspLI GGNNCC 2 cut(s) 83, 219
BspMAI CTGCAG 2 cut(s) 331, 625
BsrFI RCCGGY 1 cut(s) 411
BsrI ACTGG 1 cut(s) 106
BssAI RCCGGY 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 498
Bst2UI CCWGG 3 cut(s) 280, 408, 573
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 633
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 41, 477, 543
BstF5I GGATG 3 cut(s) 403, 593, 619
BstMAI GTCTC 1 cut(s) 142
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 3 cut(s) 323, 365, 641
BstNI CCWGG 3 cut(s) 280, 408, 573
BstNSI RCATGY 1 cut(s) 658
BstSCI CCNGG 4 cut(s) 278, 406, 498, 571
BstSFI CTRYAG 2 cut(s) 327, 621
BstV1I GCAGC 3 cut(s) 209, 313, 376
BsuRI GGCC 2 cut(s) 84, 411
BtsCI GGATG 3 cut(s) 403, 593, 619
Cac8I GCNNGC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 411
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 601
CviAII CATG 4 cut(s) 434, 446, 584, 655
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 3 cut(s) 41, 477, 543
DraI TTTAAA 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 274
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 633
Eam1105I GACNNNNNGTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 633
Eco57I CTGAAG 2 cut(s) 107, 657
EcoO109I RGGNCCY 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 278, 406, 571
FaeI CATG 4 cut(s) 437, 449, 587, 658
FatI CATG 4 cut(s) 433, 445, 583, 654
Fnu4HI GCNGC 4 cut(s) 15, 198, 327, 390
FokI GGATG 3 cut(s) 390, 600, 626
Fsp4HI GCNGC 4 cut(s) 15, 198, 327, 390
FspBI CTAG 3 cut(s) 71, 134, 201
GluI GCNGC 4 cut(s) 15, 198, 327, 390
GsaI CCCAGC 1 cut(s) 343
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 2 cut(s) 84, 411
HapII CCGG 2 cut(s) 412, 500
Hin1II CATG 4 cut(s) 437, 449, 587, 658
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 5 cut(s) 113, 247, 275, 454, 617
HpaII CCGG 2 cut(s) 412, 500
HphI GGTGA 1 cut(s) 486
Hpy166II GTNNAC 2 cut(s) 6, 669
Hpy188I TCNGA 3 cut(s) 142, 376, 544
Hpy188III TCNNGA 4 cut(s) 25, 221, 251, 628
Hpy8I GTNNAC 2 cut(s) 6, 669
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 9 cut(s) 125, 197, 317, 329, 368, 403, 464, 608, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 365, 641
HpyF3I CTNAG 3 cut(s) 41, 477, 543
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 4 cut(s) 437, 449, 587, 658
LmnI GCTCC 2 cut(s) 323, 473
Lsp1109I GCAGC 3 cut(s) 209, 313, 376
LweI GCATC 2 cut(s) 184, 412
MaeI CTAG 3 cut(s) 71, 134, 201
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 97
MboII GAAGA 3 cut(s) 100, 437, 650
MfeI CAATTG 1 cut(s) 506
MluCI AATT 6 cut(s) 74, 166, 263, 506, 515, 661
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 5 cut(s) 270, 338, 591, 604, 634
MseI TTAA 5 cut(s) 170, 285, 384, 450, 659
MspI CCGG 2 cut(s) 412, 500
MspR9I CCNGG 4 cut(s) 280, 408, 500, 573
MunI CAATTG 1 cut(s) 506
MvaI CCWGG 3 cut(s) 280, 408, 573
MwoI GCNNNNNNNGC 3 cut(s) 323, 365, 641
NciI CCSGG 1 cut(s) 500
NlaIII CATG 4 cut(s) 437, 449, 587, 658
NlaIV GGNNCC 2 cut(s) 83, 219
NspI RCATGY 1 cut(s) 658
PciI ACATGT 1 cut(s) 654
PfeI GAWTC 4 cut(s) 113, 247, 454, 617
PfoI TCCNGGA 1 cut(s) 571
PkrI GCNGC 4 cut(s) 16, 199, 328, 391
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PscI ACATGT 1 cut(s) 654
Psp6I CCWGG 3 cut(s) 278, 406, 571
PspFI CCCAGC 1 cut(s) 339
PspGI CCWGG 3 cut(s) 278, 406, 571
PspN4I GGNNCC 2 cut(s) 83, 219
PspPI GGNCC 1 cut(s) 82
PstI CTGCAG 2 cut(s) 331, 625
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
SaqAI TTAA 5 cut(s) 170, 285, 384, 450, 659
SatI GCNGC 4 cut(s) 15, 198, 327, 390
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 4 cut(s) 280, 408, 500, 573
SetI ASST 9 cut(s) 47, 99, 202, 292, 310, 328, 478, 557, 602
SfaNI GCATC 2 cut(s) 184, 412
SfcI CTRYAG 2 cut(s) 327, 621
Sse9I AATT 6 cut(s) 74, 166, 263, 506, 515, 661
SsiI CCGC 2 cut(s) 14, 182
SspI AATATT 2 cut(s) 468, 567
SspMI CTAG 3 cut(s) 71, 134, 201
StyD4I CCNGG 4 cut(s) 278, 406, 498, 571
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 24, 267
TaqII GACCGA 1 cut(s) 285
TasI AATT 6 cut(s) 74, 166, 263, 506, 515, 661
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 4 cut(s) 113, 247, 454, 617
Tru1I TTAA 5 cut(s) 170, 285, 384, 450, 659
Tru9I TTAA 5 cut(s) 170, 285, 384, 450, 659
TseI GCWGC 3 cut(s) 197, 326, 389
TspDTI ATGAA 5 cut(s) 171, 434, 438, 446, 630
TspGWI ACGGA 1 cut(s) 69
XapI RAATTY 2 cut(s) 74, 166
XceI RCATGY 1 cut(s) 658
XspI CTAG 3 cut(s) 71, 134, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.