RchiOBHm_Chr4g0418661

hydrolase activity

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
44098590 .. 44099492
903 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38864

Sequence Viewer

Length: 423 bp
ATGAGCCACTCCAGGAAATATTTTCACAAAGCTATCAAACTGAAGAGTCAAGGTGTTTCTGCAATAGGTGCTGTAGGATTTTGCTGGGGAGGGGTTGTAGTGGCAAAACTTGCAAAATCTGATGACATTAAGGCTGCTGTGATATTGCATCCTGGCCGGTTAGCAGATGAAGATATACATGAGGTTAAGGTTCATACTGCAGTATTGGGAGCTGAGATTGACAAAACTTCACCCCCAGAACAATTGAAACAATTTGGGGAGATTTTATTAGTAAAGTCTGAGTTTGATAGCTTTGTGAAAATATTTCCTGGAGTGGCTTATGGATGGACAATGAGGTATAATGCAGAGGATGAATCTGCAGTCAAGAGTGCTGAAGAGGCTCATTTGGACATGTTAAATTGGTTTACCAAGTATGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

15.52

Weight (kDa)

7.02

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 15 - 138 8e-16 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 154
AcuI CTGAAG 2 cut(s) 62, 393
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 1 cut(s) 247
AjnI CCWGG 3 cut(s) 11, 151, 307
AluBI AGCT 3 cut(s) 32, 212, 291
AluI AGCT 3 cut(s) 32, 212, 291
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 222
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 318
BciT130I CCWGG 3 cut(s) 13, 153, 309
BfmI CTRYAG 3 cut(s) 72, 198, 357
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 3 cut(s) 13, 153, 309
BmrFI CCNGG 3 cut(s) 13, 153, 309
BmsI GCATC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bse118I RCCGGY 1 cut(s) 156
BseBI CCWGG 3 cut(s) 13, 153, 309
BseGI GGATG 3 cut(s) 148, 329, 355
BseMII CTCAG 2 cut(s) 204, 270
BseXI GCAGC 1 cut(s) 121
BseYI CCCAGC 1 cut(s) 84
BshFI GGCC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 157
BsnI GGCC 1 cut(s) 156
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 205, 271
BspMAI CTGCAG 2 cut(s) 202, 361
BsrFI RCCGGY 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 156
Bst2UI CCWGG 3 cut(s) 13, 153, 309
Bst6I CTCTTC 2 cut(s) 38, 369
BstAPI GCANNNNNTGC 2 cut(s) 68, 110
BstDEI CTNAG 2 cut(s) 213, 279
BstF5I GGATG 3 cut(s) 148, 329, 355
BstMWI GCNNNNNNNGC 3 cut(s) 68, 110, 377
BstNI CCWGG 3 cut(s) 13, 153, 309
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 11, 151, 307
BstSFI CTRYAG 3 cut(s) 72, 198, 357
BstV1I GCAGC 1 cut(s) 121
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 3 cut(s) 148, 329, 355
Cfr10I RCCGGY 1 cut(s) 156
CviAII CATG 2 cut(s) 179, 391
CviJI RGCY 8 cut(s) 6, 32, 134, 156, 212, 291, 317, 380
CviKI_1 RGCY 8 cut(s) 6, 32, 134, 156, 212, 291, 317, 380
DdeI CTNAG 2 cut(s) 213, 279
EaeI YGGCCR 1 cut(s) 154
Eam1104I CTCTTC 2 cut(s) 38, 369
EarI CTCTTC 2 cut(s) 38, 369
Eco57I CTGAAG 2 cut(s) 62, 393
EcoRII CCWGG 3 cut(s) 11, 151, 307
FaeI CATG 2 cut(s) 182, 394
FaiI YATR 7 cut(s) 176, 180, 195, 321, 339, 392, 414
FatI CATG 2 cut(s) 178, 390
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 3 cut(s) 135, 336, 362
Fsp4HI GCNGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 135
GsaI CCCAGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 157
Hin1II CATG 2 cut(s) 182, 394
HinfI GANTC 2 cut(s) 46, 353
HpaII CCGG 1 cut(s) 157
HphI GGTGA 1 cut(s) 222
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 2 cut(s) 121, 280
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 1 cut(s) 405
HpyCH4V TGCA 6 cut(s) 62, 113, 148, 200, 344, 359
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 110, 377
HpyF3I CTNAG 2 cut(s) 213, 279
Hsp92II CATG 2 cut(s) 182, 394
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 8 cut(s) 25, 70, 138, 165, 170, 249, 294, 321
Lsp1109I GCAGC 1 cut(s) 121
LweI GCATC 1 cut(s) 157
MboII GAAGA 3 cut(s) 55, 182, 386
MfeI CAATTG 1 cut(s) 242
MluCI AATT 3 cut(s) 242, 251, 397
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 5 cut(s) 83, 175, 327, 340, 370
MseI TTAA 3 cut(s) 129, 186, 395
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 3 cut(s) 13, 153, 309
MunI CAATTG 1 cut(s) 242
MvaI CCWGG 3 cut(s) 13, 153, 309
MwoI GCNNNNNNNGC 3 cut(s) 68, 110, 377
NlaIII CATG 2 cut(s) 182, 394
NspI RCATGY 1 cut(s) 394
PciI ACATGT 1 cut(s) 390
PfeI GAWTC 1 cut(s) 353
PfoI TCCNGGA 2 cut(s) 11, 307
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PscI ACATGT 1 cut(s) 390
Psp6I CCWGG 3 cut(s) 11, 151, 307
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 3 cut(s) 11, 151, 307
PstI CTGCAG 2 cut(s) 202, 361
SaqAI TTAA 3 cut(s) 129, 186, 395
SatI GCNGC 1 cut(s) 135
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 3 cut(s) 13, 153, 309
SetI ASST 8 cut(s) 34, 55, 70, 186, 192, 214, 293, 338
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 3 cut(s) 72, 198, 357
Sse9I AATT 3 cut(s) 242, 251, 397
SspI AATATT 2 cut(s) 20, 303
StyD4I CCNGG 3 cut(s) 11, 151, 307
TasI AATT 3 cut(s) 242, 251, 397
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 3 cut(s) 129, 186, 395
Tru9I TTAA 3 cut(s) 129, 186, 395
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 3 cut(s) 182, 183, 366
XceI RCATGY 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.