Rorug02G0299300

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000177
Physical Location & Seq
Reverse (-)
33371320 .. 33373319
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0299300.1

Sequence Viewer

Length: 810 bp
ATGGGAAAGAAGAAATCCACCAGTACTGAAAATGAGGGATCTGGAAAACCAAAAGCCACATGGCTTGATGAGGGATGGTCAAATGTTATCAAGGCCTTTGAGGAGTTAACAGGAAGGGATTATGATAAAAGGCAATTGAAAAATAAGTGGAATTCACTTAAAAATGATTGGAAATTGTGGAGTTCACTATTGCATAAGGAAACTGGTATTGGATGGGATCCGGCTAGGATGACTGTCGATGCACCTGTTGAATGGTGGGAATCCAAAATTCAGTTGATAATTGATGCTAAGGTTCTCTGTGTATCAAAGAAGGTTCTCTGTGATGCAAGGGTCCCATCTTGTTACAGTTTGTCTGCATTGACTCTAAAGAAACGTATGGAGCTGCATGTTTATTCTGTAAGAGGTAGCATAGCCCTAGGTCACTTTGTCATGATTCCTTTAGCTAGTATAGATATTGAAGAGGTTGTGGAGGATTCTGAGCATAACGTAATTTCTGGAGATGATGAGGAGATAGACCAGCAAGGTAATGAATGTAGAGGGAAAAAGAGAACAAGTGTGGAGTGCCAAATTGGGCCTAATAAAGAAAAAAAAAATAAAGGAGTTATGGGAGGGCCAAAGAGGAAGAAAGAAAAGATGGGAGGTGCATCGAAATTGTCTAAACAAATTGATCGTCTTGTTGAAGTAGTCGAGAGTAGGAGTACAACAACATATGTCCGTAATACTAGTACGGAACAAGGAACTAATATTCAGGAGGTGATGCGAGTTGTTGCAACTTTACCAGGAGCAGAAACTAGTACCAAGCTGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

269

Amino Acids

30.23

Weight (kDa)

8.93

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 11 - 87 7.5e-15 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 804
AclWI GGATC 3 cut(s) 46, 212, 225
AcsI RAATTY 2 cut(s) 151, 267
AfaI GTAC 4 cut(s) 25, 700, 727, 796
AfiI CCNNNNNNNGG 1 cut(s) 804
AgsI TTSAA 4 cut(s) 139, 251, 458, 680
AhlI ACTAGT 2 cut(s) 722, 791
AjnI CCWGG 1 cut(s) 778
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AluBI AGCT 3 cut(s) 382, 443, 802
AluI AGCT 3 cut(s) 382, 443, 802
AlwI GGATC 3 cut(s) 46, 212, 225
AoxI GGCC 3 cut(s) 93, 572, 611
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 2 cut(s) 151, 267
ArsI GACNNNNNNTTYG 2 cut(s) 655, 687
AspA2I CCTAGG 1 cut(s) 415
AspS9I GGNCC 3 cut(s) 331, 572, 611
AsuHPI GGTGA 1 cut(s) 766
AvaII GGWCC 1 cut(s) 331
AvrII CCTAGG 1 cut(s) 415
BamHI GGATCC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 369
BccI CCATC 4 cut(s) 69, 207, 343, 628
BciT130I CCWGG 1 cut(s) 780
BcuI ACTAGT 2 cut(s) 722, 791
BfaI CTAG 5 cut(s) 225, 416, 444, 723, 792
BisI GCNGC 1 cut(s) 383
BlnI CCTAGG 1 cut(s) 415
BlsI GCNGC 1 cut(s) 384
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 780
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 331, 572, 611
BmiI GGNNCC 3 cut(s) 219, 332, 333
BmrFI CCNGG 1 cut(s) 780
BmsI GCATC 5 cut(s) 229, 274, 313, 653, 747
BpmI CTGGAG 1 cut(s) 516
Bpu10I CCTNAGC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 415
Bsc4I CCNNNNNNNGG 1 cut(s) 804
Bse1I ACTGG 2 cut(s) 21, 208
BseBI CCWGG 1 cut(s) 780
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 3 cut(s) 80, 218, 234
BseLI CCNNNNNNNGG 1 cut(s) 804
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 2 cut(s) 21, 208
BseRI GAGGAG 2 cut(s) 116, 521
BseXI GCAGC 1 cut(s) 369
BshFI GGCC 3 cut(s) 95, 574, 613
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 804
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 3 cut(s) 95, 574, 613
Bsp143I GATC 3 cut(s) 38, 217, 667
BspANI GGCC 3 cut(s) 95, 574, 613
BspCNI CTCAG 1 cut(s) 469
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 3 cut(s) 219, 332, 333
BspPI GGATC 3 cut(s) 46, 212, 225
BsrI ACTGG 2 cut(s) 21, 208
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 3 cut(s) 38, 217, 667
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 780
Bst4CI ACNGT 2 cut(s) 235, 347
Bst6I CTCTTC 1 cut(s) 453
BstDEI CTNAG 2 cut(s) 288, 477
BstF5I GGATG 3 cut(s) 80, 218, 234
BstKTI GATC 3 cut(s) 41, 220, 670
BstMBI GATC 3 cut(s) 38, 217, 667
BstNI CCWGG 1 cut(s) 780
BstNSI RCATGY 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 778
BstV1I GCAGC 1 cut(s) 369
BstX2I RGATCY 2 cut(s) 38, 217
BstYI RGATCY 2 cut(s) 38, 217
BsuRI GGCC 3 cut(s) 95, 574, 613
BtsCI GGATG 3 cut(s) 80, 218, 234
CciI TCATGA 1 cut(s) 429
Cfr13I GGNCC 3 cut(s) 331, 572, 611
Csp6I GTAC 4 cut(s) 24, 699, 726, 795
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 3 cut(s) 60, 386, 430
CviQI GTAC 4 cut(s) 24, 699, 726, 795
DdeI CTNAG 2 cut(s) 288, 477
DpnI GATC 3 cut(s) 40, 219, 669
DpnII GATC 3 cut(s) 38, 217, 667
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 151
EcoRII CCWGG 1 cut(s) 778
EcoT14I CCWWGG 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 63, 389, 433
FaqI GGGAC 1 cut(s) 317
FatI CATG 3 cut(s) 59, 385, 429
FauNDI CATATG 1 cut(s) 709
Fnu4HI GCNGC 1 cut(s) 383
FokI GGATG 3 cut(s) 87, 225, 241
Fsp4HI GCNGC 1 cut(s) 383
FspBI CTAG 5 cut(s) 225, 416, 444, 723, 792
GluI GCNGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 3 cut(s) 95, 574, 613
HapII CCGG 1 cut(s) 221
Hin1II CATG 3 cut(s) 63, 389, 433
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 4 cut(s) 260, 361, 433, 473
HpaI GTTAAC 1 cut(s) 108
HpaII CCGG 1 cut(s) 221
HphI GGTGA 1 cut(s) 766
Hpy166II GTNNAC 2 cut(s) 108, 185
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 5 cut(s) 42, 430, 495, 688, 749
Hpy8I GTNNAC 2 cut(s) 108, 185
HpyAV CCTTC 2 cut(s) 108, 304
HpyCH4III ACNGT 2 cut(s) 235, 347
HpyCH4IV ACGT 2 cut(s) 373, 486
HpyCH4V TGCA 7 cut(s) 193, 242, 326, 356, 385, 644, 770
HpyF3I CTNAG 2 cut(s) 288, 477
HpySE526I ACGT 2 cut(s) 373, 486
Hsp92II CATG 3 cut(s) 63, 389, 433
KflI GGGWCCC 1 cut(s) 331
KspAI GTTAAC 1 cut(s) 108
Kzo9I GATC 3 cut(s) 38, 217, 667
LmnI GCTCC 2 cut(s) 379, 782
Lsp1109I GCAGC 1 cut(s) 369
LweI GCATC 5 cut(s) 229, 274, 313, 653, 747
MaeI CTAG 5 cut(s) 225, 416, 444, 723, 792
MaeII ACGT 2 cut(s) 373, 486
MaeIII GTNAC 2 cut(s) 341, 419
MalI GATC 3 cut(s) 40, 219, 669
MboI GATC 3 cut(s) 38, 217, 667
MboII GAAGA 3 cut(s) 22, 470, 634
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 2 cut(s) 38, 217
MluCI AATT 9 cut(s) 134, 151, 173, 267, 279, 489, 567, 650, 663
MlyI GAGTC 1 cut(s) 355
MseI TTAA 2 cut(s) 107, 159
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 780
MunI CAATTG 1 cut(s) 134
MvaI CCWGG 1 cut(s) 780
NdeI CATATG 1 cut(s) 709
NdeII GATC 3 cut(s) 38, 217, 667
NlaIII CATG 3 cut(s) 63, 389, 433
NlaIV GGNNCC 3 cut(s) 219, 332, 333
NmuCI GTSAC 1 cut(s) 419
NspI RCATGY 1 cut(s) 389
PagI TCATGA 1 cut(s) 429
PceI AGGCCT 1 cut(s) 95
PfeI GAWTC 3 cut(s) 260, 433, 473
PflMI CCANNNNNTGG 1 cut(s) 804
PkrI GCNGC 1 cut(s) 384
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PpuMI RGGWCCY 1 cut(s) 331
Psp5II RGGWCCY 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 778
PspN4I GGNNCC 3 cut(s) 219, 332, 333
PspPI GGNCC 3 cut(s) 331, 572, 611
PspPPI RGGWCCY 1 cut(s) 331
PsuI RGATCY 2 cut(s) 38, 217
RsaI GTAC 4 cut(s) 25, 700, 727, 796
RsaNI GTAC 4 cut(s) 24, 699, 726, 795
SaqAI TTAA 2 cut(s) 107, 159
SatI GCNGC 1 cut(s) 383
Sau3AI GATC 3 cut(s) 38, 217, 667
Sau96I GGNCC 3 cut(s) 331, 572, 611
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 780
SfaNI GCATC 5 cut(s) 229, 274, 313, 653, 747
SinI GGWCC 1 cut(s) 331
SpeI ACTAGT 2 cut(s) 722, 791
Sse9I AATT 9 cut(s) 134, 151, 173, 267, 279, 489, 567, 650, 663
SseBI AGGCCT 1 cut(s) 95
SspI AATATT 1 cut(s) 745
SspMI CTAG 5 cut(s) 225, 416, 444, 723, 792
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 778
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 2 cut(s) 235, 347
TaiI ACGT 2 cut(s) 376, 489
TaqI TCGA 3 cut(s) 237, 647, 687
TasI AATT 9 cut(s) 134, 151, 173, 267, 279, 489, 567, 650, 663
TatI WGTACW 2 cut(s) 23, 698
TfiI GAWTC 3 cut(s) 260, 433, 473
Tru1I TTAA 2 cut(s) 107, 159
Tru9I TTAA 2 cut(s) 107, 159
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 2 cut(s) 704, 743
Van91I CCANNNNNTGG 1 cut(s) 804
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 2 cut(s) 151, 267
XceI RCATGY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XmaJI CCTAGG 1 cut(s) 415
XspI CTAG 5 cut(s) 225, 416, 444, 723, 792
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.