pycom15g36070

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000177
Physical Location & Seq
Reverse (-)
36161125 .. 36162650
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g36070.1

Sequence Viewer

Length: 717 bp
ATGTCCGGCCCTCAGTGCTGCTCAAATCCACCAATTCTCAAACCGGAAAGCTACGGAGTAGACAACAGTGATGAAAAACTTGGAGGCCTTAACGTCTACGTTGCGGGCTCCCCTAACTCCAAGCTTGCCATCCTTCTTGTCTCTAATGTCTTTGGATATAGAGTTCCAAACTTGAGGAAGCTTGCCGAAAACATTGCAGCTGCAGGATTCTTTGTGCTAGTTCCGGACTTCTTCTATGGCGATCCATTTGTATATGACAATAACAGGCCTCTAGCAGTCTGGTTACAAGATCATGGAACGGATAAGGGATTTGAGGATGCAAAATCAATAACTAATGCTCTTAAAGGTAAAGGAGTGTCTGCAATTGGAGCCGCCGGCTTCTGTTGGGGTGTCGTGACTGAACTTGCCAAGTCCGACTTCATCCAAGCGGCTGTGCTGTTACATCCTTCATTTGTTGCTTTGGATGATATTCAGGAGGTTAAAGTTCCCATTGCGATTCAAGGAGCTGAGATTGACGACTATTCTCCACCAGAACTCGTGAAACAGTTCGAGCAGATATTAGCTGCAAAACCTGAGGTTGATAGCTTTGTGAAGATATTTCCGAAAGCTGAACACGGTTGGACCATGAGTTACAATGCTGAAGATGAAGAAGCTGTAAAGCGTGCAGAGGAGGCTCATAGAAACACACTGGCGTGGCTCGTTAAGCATGTCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

239

Amino Acids

26.02

Weight (kDa)

5.06

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 31 - 234 2.3e-25 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 60, 96
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 3 cut(s) 104, 372, 428
AclWI GGATC 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 660
AgsI TTSAA 1 cut(s) 500
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AleI CACNNNNGTG 1 cut(s) 691
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 9 cut(s) 51, 124, 181, 200, 506, 563, 585, 608, 653
AluI AGCT 9 cut(s) 51, 124, 181, 200, 506, 563, 585, 608, 653
Alw26I GTCTC 1 cut(s) 145
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 7, 85, 266
ApeKI GCWGC 4 cut(s) 18, 197, 200, 563
Asp700I GAANNNNTTC 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 8, 621
AvaII GGWCC 1 cut(s) 621
AxyI CCTNAGG 1 cut(s) 573
BanII GRGCYC 1 cut(s) 110
BauI CACGAG 1 cut(s) 536
BbvI GCAGC 4 cut(s) 5, 187, 209, 550
BccI CCATC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 2 cut(s) 218, 272
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 6 cut(s) 19, 198, 201, 372, 429, 564
BlsI GCNGC 6 cut(s) 20, 199, 202, 373, 430, 565
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 2 cut(s) 8, 621
BmiI GGNNCC 2 cut(s) 109, 370
BmsI GCATC 1 cut(s) 307
BpuEI CTTGAG 1 cut(s) 193
BsaWI WCCGGW 2 cut(s) 43, 223
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 693
Bse21I CCTNAGG 1 cut(s) 573
Bse3DI GCAATG 2 cut(s) 192, 489
BseAI TCCGGA 1 cut(s) 223
BseGI GGATG 5 cut(s) 129, 322, 420, 442, 469
BseMI GCAATG 2 cut(s) 192, 489
BseMII CTCAG 3 cut(s) 26, 498, 564
BseNI ACTGG 1 cut(s) 693
BseRI GAGGAG 1 cut(s) 683
BseXI GCAGC 4 cut(s) 5, 187, 209, 550
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 3 cut(s) 9, 87, 268
BsiSI CCGG 4 cut(s) 6, 44, 224, 375
BsmAI GTCTC 1 cut(s) 145
BsnI GGCC 3 cut(s) 9, 87, 268
Bsp1286I GDGCHC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 2 cut(s) 241, 289
BspACI CCGC 3 cut(s) 104, 372, 428
BspANI GGCC 3 cut(s) 9, 87, 268
BspCNI CTCAG 3 cut(s) 25, 499, 565
BspEI TCCGGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 109, 370
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 192, 489
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 693
BssAI RCCGGY 1 cut(s) 374
BssMI GATC 2 cut(s) 241, 289
BssSI CACGAG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 536
Bst4CI ACNGT 3 cut(s) 68, 546, 617
BstC8I GCNNGC 5 cut(s) 106, 126, 183, 376, 663
BstDEI CTNAG 3 cut(s) 12, 507, 573
BstF5I GGATG 5 cut(s) 129, 322, 420, 442, 469
BstKTI GATC 2 cut(s) 244, 292
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 241, 289
BstMWI GCNNNNNNNGC 4 cut(s) 15, 368, 671, 703
BstNSI RCATGY 1 cut(s) 710
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 5, 187, 209, 550
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 3 cut(s) 9, 87, 268
BtsCI GGATG 5 cut(s) 129, 322, 420, 442, 469
BtsIMutI CAGTG 3 cut(s) 20, 73, 686
Cac8I GCNNGC 5 cut(s) 106, 126, 183, 376, 663
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 2 cut(s) 8, 621
CviAII CATG 3 cut(s) 293, 625, 707
DdeI CTNAG 3 cut(s) 12, 507, 573
DpnI GATC 2 cut(s) 243, 291
DpnII GATC 2 cut(s) 241, 289
Eco147I AGGCCT 2 cut(s) 87, 268
Eco24I GRGCYC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 621
Eco57I CTGAAG 1 cut(s) 660
Eco81I CCTNAGG 1 cut(s) 573
EcoT38I GRGCYC 1 cut(s) 110
FaeI CATG 3 cut(s) 296, 628, 710
FaiI YATR 8 cut(s) 159, 237, 253, 255, 294, 626, 678, 708
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FatI CATG 3 cut(s) 292, 624, 706
FauI CCCGC 1 cut(s) 97
FblI GTMKAC 2 cut(s) 60, 96
Fnu4HI GCNGC 6 cut(s) 19, 198, 201, 372, 429, 564
FokI GGATG 5 cut(s) 116, 329, 407, 429, 476
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 6 cut(s) 19, 198, 201, 372, 429, 564
FspBI CTAG 2 cut(s) 218, 272
GluI GCNGC 6 cut(s) 19, 198, 201, 372, 429, 564
HaeIII GGCC 3 cut(s) 9, 87, 268
HapII CCGG 4 cut(s) 6, 44, 224, 375
Hin1II CATG 3 cut(s) 296, 628, 710
HindIII AAGCTT 2 cut(s) 122, 179
HinfI GANTC 2 cut(s) 207, 496
HpaII CCGG 4 cut(s) 6, 44, 224, 375
Hpy166II GTNNAC 2 cut(s) 61, 97
Hpy188I TCNGA 2 cut(s) 415, 603
Hpy188III TCNNGA 4 cut(s) 224, 394, 473, 538
Hpy8I GTNNAC 2 cut(s) 61, 97
HpyAV CCTTC 2 cut(s) 143, 456
HpyCH4III ACNGT 3 cut(s) 68, 546, 617
HpyCH4IV ACGT 2 cut(s) 93, 99
HpyCH4V TGCA 6 cut(s) 197, 203, 320, 362, 566, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 15, 368, 671, 703
HpyF3I CTNAG 3 cut(s) 12, 507, 573
HpySE526I ACGT 2 cut(s) 93, 99
Hsp92II CATG 3 cut(s) 296, 628, 710
Kpn2I TCCGGA 1 cut(s) 223
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 241, 289
LmnI GCTCC 3 cut(s) 113, 368, 503
Lsp1109I GCAGC 4 cut(s) 5, 187, 209, 550
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 218, 272
MaeII ACGT 2 cut(s) 93, 99
MaeIII GTNAC 4 cut(s) 282, 394, 438, 629
MalI GATC 2 cut(s) 243, 291
MboI GATC 2 cut(s) 241, 289
MboII GAAGA 4 cut(s) 223, 604, 653, 659
MfeI CAATTG 1 cut(s) 363
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 2 cut(s) 33, 363
MmeI TCCRAC 2 cut(s) 438, 599
MnlI CCTC 9 cut(s) 21, 77, 168, 279, 307, 469, 568, 661, 664
MroI TCCGGA 1 cut(s) 223
MroNI GCCGGC 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 4 cut(s) 90, 342, 480, 702
MslI CAYNNNNRTG 1 cut(s) 691
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 4 cut(s) 6, 44, 224, 375
MunI CAATTG 1 cut(s) 363
MwoI GCNNNNNNNGC 4 cut(s) 15, 368, 671, 703
NaeI GCCGGC 1 cut(s) 376
NdeII GATC 2 cut(s) 241, 289
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 3 cut(s) 296, 628, 710
NlaIV GGNNCC 2 cut(s) 109, 370
NmuCI GTSAC 1 cut(s) 394
NspI RCATGY 1 cut(s) 710
OliI CACNNNNGTG 1 cut(s) 691
PceI AGGCCT 2 cut(s) 87, 268
PdiI GCCGGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 207, 496
PkrI GCNGC 6 cut(s) 20, 199, 202, 373, 430, 565
PspN4I GGNNCC 2 cut(s) 109, 370
PspPI GGNCC 2 cut(s) 8, 621
PstI CTGCAG 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 200
RseI CAYNNNNRTG 1 cut(s) 691
SaqAI TTAA 4 cut(s) 90, 342, 480, 702
SatI GCNGC 6 cut(s) 19, 198, 201, 372, 429, 564
Sau3AI GATC 2 cut(s) 241, 289
Sau96I GGNCC 2 cut(s) 8, 621
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 621
SmiMI CAYNNNNRTG 1 cut(s) 691
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 33, 363
SseBI AGGCCT 2 cut(s) 87, 268
SsiI CCGC 3 cut(s) 104, 372, 428
SspMI CTAG 2 cut(s) 218, 272
StuI AGGCCT 2 cut(s) 87, 268
TaaI ACNGT 3 cut(s) 68, 546, 617
TaiI ACGT 2 cut(s) 96, 102
TaqI TCGA 1 cut(s) 549
TasI AATT 2 cut(s) 33, 363
TauI GCSGC 2 cut(s) 374, 431
TfiI GAWTC 2 cut(s) 207, 496
Tru1I TTAA 4 cut(s) 90, 342, 480, 702
Tru9I TTAA 4 cut(s) 90, 342, 480, 702
TscAI CASTG 3 cut(s) 20, 73, 693
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 4 cut(s) 18, 197, 200, 563
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 4 cut(s) 87, 409, 438, 660
TspGWI ACGGA 2 cut(s) 69, 314
TspRI CASTG 3 cut(s) 20, 73, 693
VpaK11BI GGWCC 1 cut(s) 621
XceI RCATGY 1 cut(s) 710
XmiI GTMKAC 2 cut(s) 60, 96
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 2 cut(s) 218, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.