MD15G1403400.v1.1

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000177
Physical Location & Seq
Reverse (-)
50423528 .. 50424683
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1403400.v1.1.491

Sequence Viewer

Length: 540 bp
ATGTCCGGCCCTCAGTGCTGCTCAAATCCACCAATTCTCAAACCGGAAAGCTACGGAGTAGACAACTGTGTTGAAAAACTTGGAGGCCTTAACGTCTACGTCGCGGGCTCCCCTAACTCCAAGCTTGCCATCCTTCTTATCTCTAATGTCTTTGGATATAGAGTTCCAAACTTGAGGAAGCTTGCCGAAAACATTGCAGCTGCAGGATTCTTTGTGCTGGTTCCGGACTTCTTCTATGGTGATCCATTTGTATATGACAATAACAGGCCTCTAGCAGTCTGGTTACAAGATCATGGAACGGATAAGGGATTTGAGGATGCAAAATCAATAATTAATGCTCTTAAAGGTAAAGGAGTTTCTGCCATTGGAGCCGCCGGCTTCTGTTGGGGTGGTGAGTGGTTCCTTTCACAAACAACATTTTCAACTGGATGCTTAATTAGTTCCATTGCCCAAGGTAAACCTGTATGTAGTTACAGACAGCTGACCCACACAGAAGAAATTAACTCAATCGATATTGTTCTCAGCCAAAGTCGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

180

Amino Acids

19.33

Weight (kDa)

5.66

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 31 - 133 5.8e-14 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 60, 96
AccII CGCG 1 cut(s) 104
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 2 cut(s) 104, 372
AclWI GGATC 1 cut(s) 236
AgsI TTSAA 2 cut(s) 74, 423
AloI GAACNNNNNNTCC 2 cut(s) 147, 179
AluBI AGCT 5 cut(s) 51, 124, 181, 200, 481
AluI AGCT 5 cut(s) 51, 124, 181, 200, 481
AlwI GGATC 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 7, 85, 266
ApeKI GCWGC 3 cut(s) 18, 197, 200
AseI ATTAAT 1 cut(s) 333
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 251, 404
BanII GRGCYC 1 cut(s) 110
BbvI GCAGC 3 cut(s) 5, 187, 209
BccI CCATC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 4 cut(s) 19, 198, 201, 372
BlsI GCNGC 4 cut(s) 20, 199, 202, 373
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 4 cut(s) 109, 222, 370, 401
BmsI GCATC 2 cut(s) 307, 419
BpuEI CTTGAG 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 510
BsaJI CCNNGG 1 cut(s) 451
BsaWI WCCGGW 2 cut(s) 43, 223
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 430
Bse3DI GCAATG 2 cut(s) 192, 444
BseAI TCCGGA 1 cut(s) 223
BseCI ATCGAT 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 3 cut(s) 129, 322, 434
BseMI GCAATG 2 cut(s) 192, 444
BseMII CTCAG 2 cut(s) 26, 535
BseNI ACTGG 1 cut(s) 430
BseXI GCAGC 3 cut(s) 5, 187, 209
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 3 cut(s) 9, 87, 268
BshVI ATCGAT 1 cut(s) 510
BsiSI CCGG 4 cut(s) 6, 44, 224, 375
BsnI GGCC 3 cut(s) 9, 87, 268
Bsp1286I GDGCHC 1 cut(s) 110
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 2 cut(s) 241, 289
BspACI CCGC 2 cut(s) 104, 372
BspANI GGCC 3 cut(s) 9, 87, 268
BspCNI CTCAG 2 cut(s) 25, 534
BspDI ATCGAT 1 cut(s) 510
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 4 cut(s) 109, 222, 370, 401
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 1 cut(s) 236
BsrDI GCAATG 2 cut(s) 192, 444
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 430
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 241, 289
BssT1I CCWWGG 1 cut(s) 451
Bst4CI ACNGT 1 cut(s) 68
BstC8I GCNNGC 4 cut(s) 106, 126, 183, 376
BstDEI CTNAG 2 cut(s) 12, 521
BstF5I GGATG 3 cut(s) 129, 322, 434
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 2 cut(s) 244, 292
BstMBI GATC 2 cut(s) 241, 289
BstMWI GCNNNNNNNGC 2 cut(s) 15, 368
BstSFI CTRYAG 1 cut(s) 201
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 5, 187, 209
Bsu15I ATCGAT 1 cut(s) 510
BsuRI GGCC 3 cut(s) 9, 87, 268
BsuTUI ATCGAT 1 cut(s) 510
BtsCI GGATG 3 cut(s) 129, 322, 434
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 4 cut(s) 106, 126, 183, 376
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 8
ClaI ATCGAT 1 cut(s) 510
CviAII CATG 1 cut(s) 293
DdeI CTNAG 2 cut(s) 12, 521
DpnI GATC 2 cut(s) 243, 291
DpnII GATC 2 cut(s) 241, 289
Eco130I CCWWGG 1 cut(s) 451
Eco147I AGGCCT 2 cut(s) 87, 268
Eco24I GRGCYC 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 1 cut(s) 296
FaiI YATR 6 cut(s) 159, 237, 253, 255, 294, 466
FatI CATG 1 cut(s) 292
FauI CCCGC 1 cut(s) 97
FblI GTMKAC 2 cut(s) 60, 96
Fnu4HI GCNGC 4 cut(s) 19, 198, 201, 372
FokI GGATG 3 cut(s) 116, 329, 441
FriOI GRGCYC 1 cut(s) 110
Fsp4HI GCNGC 4 cut(s) 19, 198, 201, 372
FspBI CTAG 1 cut(s) 272
GluI GCNGC 4 cut(s) 19, 198, 201, 372
HaeIII GGCC 3 cut(s) 9, 87, 268
HapII CCGG 4 cut(s) 6, 44, 224, 375
Hin1II CATG 1 cut(s) 296
HindIII AAGCTT 2 cut(s) 122, 179
HinfI GANTC 1 cut(s) 207
HpaII CCGG 4 cut(s) 6, 44, 224, 375
HphI GGTGA 2 cut(s) 251, 404
Hpy166II GTNNAC 3 cut(s) 61, 97, 458
Hpy188III TCNNGA 2 cut(s) 224, 533
Hpy8I GTNNAC 3 cut(s) 61, 97, 458
Hpy99I CGWCG 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 2 cut(s) 93, 99
HpyCH4V TGCA 3 cut(s) 197, 203, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 368
HpyF3I CTNAG 2 cut(s) 12, 521
HpySE526I ACGT 2 cut(s) 93, 99
Hsp92II CATG 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 223
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 241, 289
LmnI GCTCC 2 cut(s) 113, 368
Lsp1109I GCAGC 3 cut(s) 5, 187, 209
LweI GCATC 2 cut(s) 307, 419
MaeI CTAG 1 cut(s) 272
MaeII ACGT 2 cut(s) 93, 99
MaeIII GTNAC 3 cut(s) 282, 470, 533
MalI GATC 2 cut(s) 243, 291
MboI GATC 2 cut(s) 241, 289
MboII GAAGA 2 cut(s) 223, 506
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 4 cut(s) 33, 330, 435, 498
MnlI CCTC 5 cut(s) 21, 77, 168, 279, 307
MroI TCCGGA 1 cut(s) 223
MroNI GCCGGC 1 cut(s) 374
MseI TTAA 5 cut(s) 90, 333, 342, 434, 501
MspA1I CMGCKG 2 cut(s) 200, 481
MspI CCGG 4 cut(s) 6, 44, 224, 375
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 15, 368
NaeI GCCGGC 1 cut(s) 376
NdeII GATC 2 cut(s) 241, 289
NgoMIV GCCGGC 1 cut(s) 374
NlaIII CATG 1 cut(s) 296
NlaIV GGNNCC 4 cut(s) 109, 222, 370, 401
NmuCI GTSAC 1 cut(s) 533
PceI AGGCCT 2 cut(s) 87, 268
PdiI GCCGGC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 207
PkrI GCNGC 4 cut(s) 20, 199, 202, 373
PshBI ATTAAT 1 cut(s) 333
PspN4I GGNNCC 4 cut(s) 109, 222, 370, 401
PspPI GGNCC 1 cut(s) 8
PstI CTGCAG 1 cut(s) 205
PvuII CAGCTG 2 cut(s) 200, 481
SaqAI TTAA 5 cut(s) 90, 333, 342, 434, 501
SatI GCNGC 4 cut(s) 19, 198, 201, 372
Sau3AI GATC 2 cut(s) 241, 289
Sau96I GGNCC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 110
SfaNI GCATC 2 cut(s) 307, 419
SfcI CTRYAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 4 cut(s) 33, 330, 435, 498
SseBI AGGCCT 2 cut(s) 87, 268
SsiI CCGC 2 cut(s) 104, 372
SspMI CTAG 1 cut(s) 272
StuI AGGCCT 2 cut(s) 87, 268
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 2 cut(s) 96, 102
TaqI TCGA 1 cut(s) 510
TasI AATT 4 cut(s) 33, 330, 435, 498
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 1 cut(s) 207
Tru1I TTAA 5 cut(s) 90, 333, 342, 434, 501
Tru9I TTAA 5 cut(s) 90, 333, 342, 434, 501
TscAI CASTG 1 cut(s) 20
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 3 cut(s) 18, 197, 200
Tsp45I GTSAC 1 cut(s) 533
TspGWI ACGGA 2 cut(s) 69, 314
TspRI CASTG 1 cut(s) 20
VspI ATTAAT 1 cut(s) 333
XmiI GTMKAC 2 cut(s) 60, 96
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.