RchiOBHm_Chr1g0334471

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000177
Physical Location & Seq
Reverse (-)
26681783 .. 26684177
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56319

Sequence Viewer

Length: 906 bp
ATGCTCAGAATGTTCACCATAGTATTACATTTAGTCTGTGTGATTTTGTGTCTGCAATTGCAACAAGGTGTGTCTGGTCATCAGTGCTTAGAGCATCCACCCAACCTAAACGCAACCTCAGGAGCTGGAACAGTCATTGAAGTTGGAGGCTTGAAGGCCTATGTGACTGGCCCTTCCAATTCCGAGCTTGCCATAATCCTTGCTTCTGACATCTATGGATTTGAAGCACCAAACTTAAGGAAAATTGCAGACAAAGTTGCTAGCAATGCTGGATTCAATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATACAATCCTAACAACACTCAGAGGAATATGACAGACTGGCTAAGGGACCATGGAACAGACAAAGGTTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAAAAAAGGGGTATCCGGGATAGGAGCTGCAGGGTTCTGTTGGGGCGGCAAAGTAGTTGCGGAGCTATCAAAGGGTTATTACACCGAGGCTGCAGTTTTGTTACACCCTTCCCGTGTCACTCTTGATGATATTAAAGGTACGGCATCCCTTACACAATTCACAGTTGAAAAAACACTTACTTTCAAAAATATTGATATCCTGAAAGTCTTTTGCAACAGGCAATCTGATCTCAGACAAAAAGAACTAATTAAGACTCCAATAGCCATATTGGCTGCTCAATTTGACAACGGCACTGCACCTGAACTCATGAAACAGTTTAAGGAGATTTTATCCACTAATAAGATTGATAACTTTGTGAAAATATTTCCTGGTGTTTCGCATGGATGGACTGTCAGGTATAAAGATGACAATGTGACTGCTGTCAAAAGCGCTAATGAAGCTCATCAAGATATGTTGGACTGGTTTATTACTACGTATGTTCAAAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

301

Amino Acids

33.14

Weight (kDa)

8.18

Isoelectric Point (pI)

24.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 51 - 294 8.3e-30 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 459, 473
AclWI GGATC 1 cut(s) 302
AfaI GTAC 1 cut(s) 553
AfeI AGCGCT 1 cut(s) 844
AflII CTTAAG 1 cut(s) 235
AflIII ACRYGT 1 cut(s) 394
AgsI TTSAA 8 cut(s) 140, 154, 224, 277, 383, 581, 598, 896
AjnI CCWGG 1 cut(s) 781
AluBI AGCT 5 cut(s) 125, 187, 440, 478, 854
AluI AGCT 5 cut(s) 125, 187, 440, 478, 854
AlwI GGATC 1 cut(s) 302
AlwNI CAGNNNCTG 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 844
AoxI GGCC 2 cut(s) 156, 169
ApeKI GCWGC 4 cut(s) 404, 440, 503, 686
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AspLEI GCGC 1 cut(s) 845
AspS9I GGNCC 2 cut(s) 170, 358
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 1 cut(s) 7
AsuNHI GCTAGC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 358
AxyI CCTNAGG 1 cut(s) 118
BbvI GCAGC 4 cut(s) 391, 427, 490, 673
BccI CCATC 1 cut(s) 792
BceAI ACGGC 2 cut(s) 570, 718
BciT130I CCWGG 1 cut(s) 783
BciVI GTATCC 1 cut(s) 436
BcnI CCSGG 1 cut(s) 430
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 441, 504
BfoI RGCGCY 1 cut(s) 846
BfrI CTTAAG 1 cut(s) 235
BfuI GTATCC 1 cut(s) 436
BglI GCCNNNNNGGC 1 cut(s) 683
BisI GCNGC 5 cut(s) 405, 441, 460, 504, 687
BlsI GCNGC 5 cut(s) 406, 442, 461, 505, 688
Bme1390I CCNGG 2 cut(s) 430, 783
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 170, 358
BmiI GGNNCC 2 cut(s) 288, 359
BmrFI CCNGG 2 cut(s) 430, 783
BmsI GCATC 3 cut(s) 103, 376, 566
BmtI GCTAGC 1 cut(s) 264
BoxI GACNNNNGTC 1 cut(s) 833
Bpu10I CCTNAGC 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 430
BsaAI YACGTR 1 cut(s) 888
BsaJI CCNNGG 2 cut(s) 361, 498
Bse1I ACTGG 3 cut(s) 172, 353, 878
Bse21I CCTNAGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 783
BseDI CCNNGG 2 cut(s) 361, 498
BseGI GGATG 3 cut(s) 94, 557, 803
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 4 cut(s) 19, 132, 344, 658
BseNI ACTGG 3 cut(s) 172, 353, 878
BseXI GCAGC 4 cut(s) 391, 427, 490, 673
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 2 cut(s) 158, 171
BsiSI CCGG 1 cut(s) 429
BslFI GGGAC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 2 cut(s) 158, 171
Bsp143I GATC 2 cut(s) 307, 640
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 2 cut(s) 459, 473
BspANI GGCC 2 cut(s) 158, 171
BspCNI CTCAG 4 cut(s) 18, 131, 343, 657
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 2 cut(s) 288, 359
BspMAI CTGCAG 2 cut(s) 445, 508
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 302
BspTI CTTAAG 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 271
BsrI ACTGG 3 cut(s) 172, 353, 878
BssECI CCNNGG 2 cut(s) 361, 498
BssMI GATC 2 cut(s) 307, 640
BssT1I CCWWGG 1 cut(s) 361
Bst2UI CCWGG 1 cut(s) 783
Bst4CI ACNGT 4 cut(s) 133, 577, 729, 805
BstAFI CTTAAG 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 888
BstC8I GCNNGC 2 cut(s) 189, 262
BstDEI CTNAG 6 cut(s) 5, 88, 118, 330, 353, 644
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 3 cut(s) 94, 557, 803
BstH2I RGCGCY 1 cut(s) 846
BstHHI GCGC 1 cut(s) 845
BstKTI GATC 2 cut(s) 310, 643
BstMBI GATC 2 cut(s) 307, 640
BstMWI GCNNNNNNNGC 3 cut(s) 266, 683, 851
BstNI CCWGG 1 cut(s) 783
BstPAI GACNNNNGTC 1 cut(s) 833
BstSCI CCNGG 2 cut(s) 428, 781
BstSFI CTRYAG 2 cut(s) 441, 504
BstSNI TACGTA 1 cut(s) 888
BstV1I GCAGC 4 cut(s) 391, 427, 490, 673
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
Bsu36I CCTNAGG 1 cut(s) 118
BsuI GTATCC 1 cut(s) 436
BsuRI GGCC 2 cut(s) 158, 171
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 3 cut(s) 94, 557, 803
BtsI GCAGTG 1 cut(s) 705
BtsIMutI CAGTG 2 cut(s) 89, 705
Cac8I GCNNGC 2 cut(s) 189, 262
CaiI CAGNNNCTG 1 cut(s) 125
CciI TCATGA 1 cut(s) 720
CfoI GCGC 1 cut(s) 845
Cfr13I GGNCC 2 cut(s) 170, 358
Csp6I GTAC 1 cut(s) 552
CviAII CATG 4 cut(s) 362, 721, 794, 903
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 6 cut(s) 5, 88, 118, 330, 353, 644
DpnI GATC 2 cut(s) 309, 642
DpnII GATC 2 cut(s) 307, 640
Eco105I TACGTA 1 cut(s) 888
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 158
Eco32I GATATC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 358
Eco47III AGCGCT 1 cut(s) 844
Eco81I CCTNAGG 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 781
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 4 cut(s) 365, 724, 797, 906
FaqI GGGAC 1 cut(s) 371
FatI CATG 4 cut(s) 361, 720, 793, 902
Fnu4HI GCNGC 5 cut(s) 405, 441, 460, 504, 687
FokI GGATG 3 cut(s) 81, 544, 810
Fsp4HI GCNGC 5 cut(s) 405, 441, 460, 504, 687
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 844
GluI GCNGC 5 cut(s) 405, 441, 460, 504, 687
HaeII RGCGCY 1 cut(s) 846
HaeIII GGCC 2 cut(s) 158, 171
HapII CCGG 1 cut(s) 429
HhaI GCGC 1 cut(s) 845
Hin1II CATG 4 cut(s) 365, 724, 797, 906
Hin6I GCGC 1 cut(s) 843
HinP1I GCGC 1 cut(s) 843
HinfI GANTC 2 cut(s) 273, 667
HpaII CCGG 1 cut(s) 429
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 6 cut(s) 8, 184, 208, 333, 640, 647
Hpy188III TCNNGA 6 cut(s) 120, 290, 536, 613, 721, 860
Hpy8I GTNNAC 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 148, 183, 531
HpyCH4III ACNGT 4 cut(s) 133, 577, 729, 805
HpyCH4IV ACGT 2 cut(s) 394, 887
HpyCH4V TGCA 7 cut(s) 55, 61, 248, 443, 506, 627, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 683, 851
HpyF3I CTNAG 6 cut(s) 5, 88, 118, 330, 353, 644
HpySE526I ACGT 2 cut(s) 394, 887
Hsp92II CATG 4 cut(s) 365, 724, 797, 906
HspAI GCGC 1 cut(s) 843
Kzo9I GATC 2 cut(s) 307, 640
LmnI GCTCC 3 cut(s) 122, 437, 475
Lsp1109I GCAGC 4 cut(s) 391, 427, 490, 673
LweI GCATC 3 cut(s) 103, 376, 566
MaeI CTAG 1 cut(s) 261
MaeII ACGT 2 cut(s) 394, 887
MaeIII GTNAC 4 cut(s) 163, 513, 529, 826
MalI GATC 2 cut(s) 309, 642
MboI GATC 2 cut(s) 307, 640
MboII GAAGA 1 cut(s) 395
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 1 cut(s) 307
MluCI AATT 7 cut(s) 56, 178, 243, 399, 569, 660, 692
MlyI GAGTC 1 cut(s) 661
MmeI TCCRAC 2 cut(s) 124, 849
MnlI CCTC 4 cut(s) 127, 140, 327, 493
MseI TTAA 4 cut(s) 236, 546, 663, 732
MspCI CTTAAG 1 cut(s) 235
MspI CCGG 1 cut(s) 429
MspR9I CCNGG 2 cut(s) 430, 783
MunI CAATTG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 783
MwoI GCNNNNNNNGC 3 cut(s) 266, 683, 851
NciI CCSGG 1 cut(s) 430
NcoI CCATGG 1 cut(s) 361
NdeII GATC 2 cut(s) 307, 640
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 4 cut(s) 365, 724, 797, 906
NlaIV GGNNCC 2 cut(s) 288, 359
NmuCI GTSAC 3 cut(s) 163, 529, 826
PagI TCATGA 1 cut(s) 720
PceI AGGCCT 1 cut(s) 158
PfeI GAWTC 1 cut(s) 273
PfoI TCCNGGA 1 cut(s) 428
PkrI GCNGC 5 cut(s) 406, 442, 461, 505, 688
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
Ppu21I YACGTR 1 cut(s) 888
PshAI GACNNNNGTC 1 cut(s) 833
Psp6I CCWGG 1 cut(s) 781
PspGI CCWGG 1 cut(s) 781
PspN4I GGNNCC 2 cut(s) 288, 359
PspPI GGNCC 2 cut(s) 170, 358
PstI CTGCAG 2 cut(s) 445, 508
PstNI CAGNNNCTG 1 cut(s) 125
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
SaqAI TTAA 4 cut(s) 236, 546, 663, 732
SatI GCNGC 5 cut(s) 405, 441, 460, 504, 687
Sau3AI GATC 2 cut(s) 307, 640
Sau96I GGNCC 2 cut(s) 170, 358
SchI GAGTC 1 cut(s) 661
ScrFI CCNGG 2 cut(s) 430, 783
SfaNI GCATC 3 cut(s) 103, 376, 566
SfcI CTRYAG 2 cut(s) 441, 504
SinI GGWCC 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
SnaBI TACGTA 1 cut(s) 888
Sse9I AATT 7 cut(s) 56, 178, 243, 399, 569, 660, 692
SseBI AGGCCT 1 cut(s) 158
SsiI CCGC 2 cut(s) 459, 473
SspI AATATT 2 cut(s) 604, 777
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 428, 781
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 4 cut(s) 133, 577, 729, 805
TaiI ACGT 2 cut(s) 397, 890
TasI AATT 7 cut(s) 56, 178, 243, 399, 569, 660, 692
TauI GCSGC 1 cut(s) 462
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 4 cut(s) 236, 546, 663, 732
Tru9I TTAA 4 cut(s) 236, 546, 663, 732
TscAI CASTG 2 cut(s) 89, 712
TseFI GTSAC 3 cut(s) 163, 529, 826
TseI GCWGC 4 cut(s) 404, 440, 503, 686
Tsp45I GTSAC 3 cut(s) 163, 529, 826
TspDTI ATGAA 2 cut(s) 737, 864
TspRI CASTG 2 cut(s) 89, 712
Vha464I CTTAAG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 358
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.