Rh4CG212300

hydrolase activity

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
44216532 .. 44224283
7752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG212300.1

Sequence Viewer

Length: 159 bp
ATGAAGAGTGGCGAGAAACCTGCGGATAAAGTTGCTGCAACTGGATTTTTCGTGGTGGTTCCCGATTTCTTTTATGGCGACCTCGTGAATCCTGATAATCCTCAATTCGACCGAGAGTCCTGGTTTAAAGCTCATAGCAAGGTTAGTGACTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.86

Weight (kDa)

4.99

Isoelectric Point (pI)

6.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 28
AciI CCGC 1 cut(s) 23
AhdI GACNNNNNGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 1 cut(s) 131
AluI AGCT 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 35
BauI CACGAG 1 cut(s) 83
BbvI GCAGC 1 cut(s) 22
BcgI CGANNNNNNTGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 121
BmeRI GACNNNNNGTC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 46
BseBI CCWGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 46
BseXI GCAGC 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 112
BspACI CCGC 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 60
BspMI ACCTGC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 46
BssSI CACGAG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 121
BstMCI CGRYCG 1 cut(s) 112
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 22
BveI ACCTGC 1 cut(s) 28
CviJI RGCY 1 cut(s) 131
CviKI_1 RGCY 1 cut(s) 131
DraI TTTAAA 1 cut(s) 127
DriI GACNNNNNGTC 1 cut(s) 115
Eam1105I GACNNNNNGTC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 119
FaiI YATR 2 cut(s) 75, 135
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 36
HinfI GANTC 2 cut(s) 88, 116
Hpy188III TCNNGA 4 cut(s) 62, 85, 92, 156
HpyCH4V TGCA 1 cut(s) 38
LpnPI CCDG 5 cut(s) 27, 33, 105, 106, 133
Lsp1109I GCAGC 1 cut(s) 22
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 104
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 2 cut(s) 92, 111
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 60
NmuCI GTSAC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 88
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 60
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 36
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 1 cut(s) 121
SetI ASST 4 cut(s) 22, 84, 133, 144
Sse9I AATT 1 cut(s) 104
SsiI CCGC 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 119
TaqI TCGA 1 cut(s) 108
TaqII GACCGA 1 cut(s) 126
TasI AATT 1 cut(s) 104
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 146
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.