Rmu_sc0006431.1_g000006

hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006431.1
OG0000177
Physical Location & Seq
Forward (+)
16785 .. 17669
885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006431.1_g000006.1.cds

Sequence Viewer

Length: 426 bp
atggaaaaaggatacgaggattctaaaccagtccttgctgcattaaagagtcaaggtgtttctgcaataggagctgcaggattttgctggggagggaatgtagtggccaaacttgcaaaatctgatgacattaaggccgctgtgatattgcaccctggccggttagcagatgaagatgtacatgaggttaaggttcatactgcaatattgggagctgagattgacaaaacttcaccaccagaacaattgaaacaatttgaggagattttatcagtgaagtctgagtttgatagctttgtgaaaatatttcctggagtggctcatggatggacaatgaggtacaatgcagaggatgaatctgcagtcaagagtgatgaagaggctcatttggacatgttaaattggtttaccaagtatgtcaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

141

Amino Acids

15.48

Weight (kDa)

5.19

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AcoI YGGCCR 2 cut(s) 105, 157
AfaI GTAC 2 cut(s) 180, 341
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 1 cut(s) 250
AjnI CCWGG 2 cut(s) 154, 310
AluBI AGCT 3 cut(s) 74, 215, 294
AluI AGCT 3 cut(s) 74, 215, 294
AoxI GGCC 3 cut(s) 105, 135, 157
ApeKI GCWGC 2 cut(s) 38, 74
AsuHPI GGTGA 1 cut(s) 225
BalI TGGCCA 1 cut(s) 107
BbvI GCAGC 2 cut(s) 25, 61
BccI CCATC 1 cut(s) 321
BciT130I CCWGG 2 cut(s) 156, 312
BciVI GTATCC 1 cut(s) 5
BfmI CTRYAG 2 cut(s) 75, 360
BfuI GTATCC 1 cut(s) 5
BisI GCNGC 3 cut(s) 39, 75, 138
BlsI GCNGC 3 cut(s) 40, 76, 139
Bme1390I CCNGG 2 cut(s) 156, 312
BmrFI CCNGG 2 cut(s) 156, 312
BpmI CTGGAG 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 154
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse118I RCCGGY 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 29
BseBI CCWGG 2 cut(s) 156, 312
BseDI CCNNGG 1 cut(s) 154
BseGI GGATG 2 cut(s) 332, 358
BseMII CTCAG 2 cut(s) 207, 273
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 25, 61
BseYI CCCAGC 1 cut(s) 87
BshFI GGCC 3 cut(s) 107, 137, 159
BsiSI CCGG 1 cut(s) 160
BsnI GGCC 3 cut(s) 107, 137, 159
Bsp1407I TGTACA 1 cut(s) 178
BspACI CCGC 1 cut(s) 138
BspANI GGCC 3 cut(s) 107, 137, 159
BspCNI CTCAG 2 cut(s) 208, 274
BspMAI CTGCAG 2 cut(s) 79, 364
BsrFI RCCGGY 1 cut(s) 159
BsrGI TGTACA 1 cut(s) 178
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 154
Bst2UI CCWGG 2 cut(s) 156, 312
Bst6I CTCTTC 1 cut(s) 372
BstAUI TGTACA 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 216, 282
BstF5I GGATG 2 cut(s) 332, 358
BstMWI GCNNNNNNNGC 2 cut(s) 71, 113
BstNI CCWGG 2 cut(s) 156, 312
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 2 cut(s) 154, 310
BstSFI CTRYAG 2 cut(s) 75, 360
BstV1I GCAGC 2 cut(s) 25, 61
BsuI GTATCC 1 cut(s) 5
BsuRI GGCC 3 cut(s) 107, 137, 159
BtsCI GGATG 2 cut(s) 332, 358
BtsIMutI CAGTG 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 159
Csp6I GTAC 2 cut(s) 179, 340
CviAII CATG 3 cut(s) 182, 323, 394
CviJI RGCY 8 cut(s) 74, 107, 137, 159, 215, 294, 320, 383
CviKI_1 RGCY 8 cut(s) 74, 107, 137, 159, 215, 294, 320, 383
CviQI GTAC 2 cut(s) 179, 340
DdeI CTNAG 2 cut(s) 216, 282
EaeI YGGCCR 2 cut(s) 105, 157
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EcoRII CCWGG 2 cut(s) 154, 310
FaeI CATG 3 cut(s) 185, 326, 397
FaiI YATR 5 cut(s) 183, 198, 324, 395, 417
FatI CATG 3 cut(s) 181, 322, 393
Fnu4HI GCNGC 3 cut(s) 39, 75, 138
FokI GGATG 2 cut(s) 339, 365
Fsp4HI GCNGC 3 cut(s) 39, 75, 138
GluI GCNGC 3 cut(s) 39, 75, 138
GsaI CCCAGC 1 cut(s) 91
GsuI CTGGAG 1 cut(s) 333
HaeIII GGCC 3 cut(s) 107, 137, 159
HapII CCGG 1 cut(s) 160
Hin1II CATG 3 cut(s) 185, 326, 397
HinfI GANTC 3 cut(s) 20, 49, 356
HpaII CCGG 1 cut(s) 160
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 1 cut(s) 408
Hpy188I TCNGA 2 cut(s) 124, 283
Hpy188III TCNNGA 1 cut(s) 367
Hpy8I GTNNAC 1 cut(s) 408
HpyCH4V TGCA 8 cut(s) 41, 65, 77, 116, 151, 203, 347, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 113
HpyF3I CTNAG 2 cut(s) 216, 282
Hsp92II CATG 3 cut(s) 185, 326, 397
LmnI GCTCC 2 cut(s) 71, 212
LpnPI CCDG 9 cut(s) 42, 63, 73, 141, 168, 173, 252, 297, 324
Lsp1109I GCAGC 2 cut(s) 25, 61
MboII GAAGA 2 cut(s) 185, 389
MfeI CAATTG 1 cut(s) 245
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 3 cut(s) 245, 254, 400
MluNI TGGCCA 1 cut(s) 107
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 7 cut(s) 10, 86, 178, 253, 330, 343, 373
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
MseI TTAA 4 cut(s) 44, 132, 189, 398
Msp20I TGGCCA 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 140
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 2 cut(s) 156, 312
MunI CAATTG 1 cut(s) 245
MvaI CCWGG 2 cut(s) 156, 312
MwoI GCNNNNNNNGC 2 cut(s) 71, 113
NlaIII CATG 3 cut(s) 185, 326, 397
NspI RCATGY 1 cut(s) 397
PciI ACATGT 1 cut(s) 393
PfeI GAWTC 2 cut(s) 20, 356
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 3 cut(s) 40, 76, 139
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PscI ACATGT 1 cut(s) 393
Psp6I CCWGG 2 cut(s) 154, 310
PspFI CCCAGC 1 cut(s) 87
PspGI CCWGG 2 cut(s) 154, 310
PstI CTGCAG 2 cut(s) 79, 364
RsaI GTAC 2 cut(s) 180, 341
RsaNI GTAC 2 cut(s) 179, 340
SaqAI TTAA 4 cut(s) 44, 132, 189, 398
SatI GCNGC 3 cut(s) 39, 75, 138
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 156, 312
SetI ASST 7 cut(s) 58, 76, 189, 195, 217, 296, 341
SfcI CTRYAG 2 cut(s) 75, 360
Sse9I AATT 3 cut(s) 245, 254, 400
SsiI CCGC 1 cut(s) 138
SspI AATATT 2 cut(s) 207, 306
StyD4I CCNGG 2 cut(s) 154, 310
TasI AATT 3 cut(s) 245, 254, 400
TatI WGTACW 1 cut(s) 178
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 20, 356
Tru1I TTAA 4 cut(s) 44, 132, 189, 398
Tru9I TTAA 4 cut(s) 44, 132, 189, 398
TscAI CASTG 1 cut(s) 279
TseI GCWGC 2 cut(s) 38, 74
TspDTI ATGAA 4 cut(s) 185, 186, 369, 390
TspRI CASTG 1 cut(s) 279
XceI RCATGY 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.