Rroxscaffold_5G00361900

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000177
Physical Location & Seq
Forward (+)
42635747 .. 42638440
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361900.1

Sequence Viewer

Length: 636 bp
ATGTTGCGACAGCTACACCAAAGAAAGATAGAAGAATTGTCAGGGCCTCAGTGCTGCTCGAACCCACCGATCCTGAATCCAACCAGTGGATCCGGCCACGTTGAGAAGCTTGGTGGTCTCGACTCCTATCTGACTGGCTCTCCTGACTCCAAGCTTGCCATTGTTCTTGTCTCTGACGTTTTTGGATATGATGCTCCAAACTTGAGGAAGCTCGCAGACAAAGTTGCAGCTGCTGGCTTCTTTGTAGTGGTCCCTGACTTCTTTTATGGAGACCCTTATGTACCTCCAGCTGATGGATCCCATGGCGGTATACCTACATGGCTGAAGGGTCATGGACCGGAGAAGGGATTTGAAGATGTTAAAGTAGTTATTGAAGCTCTAAAAAGTAAAGGTGTTTCTGCAATCGGTGCTGCAGGCTTCTGTTGGGGAGCCAAAGTTGTAGTTGAACTTGCGAAGGGTGACTTTATCCAAGCTACTGTTCTGGCTCATCCTTCATTTGTCACTGTGGATGATATCAAGGCTGTTAAGGTTCCAATATCTATACTTGGAGCTGAGATTGATCGGTCATCTCCGCCTGAACTCGTGAAACAATTTGAAGAGGCTTTGACTGCAAAGTCTGAGACAAAGAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

211

Amino Acids

22.38

Weight (kDa)

5.96

Isoelectric Point (pI)

32.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 41 - 207 7.7e-24 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 613
AccB7I CCANNNNNTGG 2 cut(s) 86, 293
AccI GTMKAC 1 cut(s) 310
AciI CCGC 2 cut(s) 306, 572
AclWI GGATC 5 cut(s) 64, 84, 97, 291, 304
AcoI YGGCCR 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 344
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 3 cut(s) 86, 293, 344
AgsI TTSAA 4 cut(s) 353, 374, 446, 596
AjuI GAANNNNNNNTTGG 2 cut(s) 462, 494
Alw26I GTCTC 4 cut(s) 122, 175, 264, 614
AlwI GGATC 5 cut(s) 64, 84, 97, 291, 304
AlwNI CAGNNNCTG 1 cut(s) 233
AoxI GGCC 2 cut(s) 44, 94
ApeKI GCWGC 4 cut(s) 54, 227, 230, 410
AspS9I GGNCC 3 cut(s) 44, 250, 335
AsuHPI GGTGA 1 cut(s) 470
AvaII GGWCC 2 cut(s) 250, 335
BamHI GGATCC 2 cut(s) 89, 296
BauI CACGAG 1 cut(s) 581
BbvI GCAGC 4 cut(s) 41, 217, 239, 397
BccI CCATC 1 cut(s) 287
BcoDI GTCTC 4 cut(s) 122, 175, 264, 614
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 4 cut(s) 55, 228, 231, 411
BlsI GCNGC 4 cut(s) 56, 229, 232, 412
Bme18I GGWCC 2 cut(s) 250, 335
BmgT120I GGNCC 3 cut(s) 44, 250, 335
BmiI GGNNCC 5 cut(s) 91, 252, 298, 430, 531
BmsI GCATC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 223
BsaI GGTCTC 2 cut(s) 122, 264
BsaJI CCNNGG 1 cut(s) 301
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 4 cut(s) 124, 154, 420, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 293, 344
Bse1I ACTGG 2 cut(s) 84, 139
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 2 cut(s) 487, 514
BseLI CCNNNNNNNGG 3 cut(s) 86, 293, 344
BseMII CTCAG 3 cut(s) 62, 543, 609
BseNI ACTGG 2 cut(s) 84, 139
BseXI GCAGC 4 cut(s) 41, 217, 239, 397
BshFI GGCC 2 cut(s) 46, 96
BsiSI CCGG 2 cut(s) 93, 338
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 3 cut(s) 86, 293, 344
BsmAI GTCTC 4 cut(s) 122, 175, 264, 614
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 46, 96
Bso31I GGTCTC 2 cut(s) 122, 264
Bsp143I GATC 4 cut(s) 69, 89, 296, 559
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 2 cut(s) 306, 572
BspANI GGCC 2 cut(s) 46, 96
BspCNI CTCAG 3 cut(s) 61, 544, 610
BspLI GGNNCC 5 cut(s) 91, 252, 298, 430, 531
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 5 cut(s) 64, 84, 97, 291, 304
BspTNI GGTCTC 2 cut(s) 122, 264
BsrI ACTGG 2 cut(s) 84, 139
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 4 cut(s) 69, 89, 296, 559
BssNAI GTATAC 1 cut(s) 311
BssSI CACGAG 1 cut(s) 581
BssT1I CCWWGG 1 cut(s) 301
Bst1107I GTATAC 1 cut(s) 311
Bst2BI CACGAG 1 cut(s) 581
Bst4CI ACNGT 2 cut(s) 478, 505
Bst6I CTCTTC 1 cut(s) 591
BstAPI GCANNNNNTGC 1 cut(s) 407
BstC8I GCNNGC 4 cut(s) 156, 213, 235, 415
BstDEI CTNAG 3 cut(s) 48, 552, 618
BstDSI CCRYGG 1 cut(s) 301
BstF5I GGATG 2 cut(s) 487, 514
BstKTI GATC 4 cut(s) 72, 92, 299, 562
BstMAI GTCTC 4 cut(s) 122, 175, 264, 614
BstMBI GATC 4 cut(s) 69, 89, 296, 559
BstMWI GCNNNNNNNGC 2 cut(s) 407, 608
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 4 cut(s) 41, 217, 239, 397
BstX2I RGATCY 2 cut(s) 89, 296
BstYI RGATCY 2 cut(s) 89, 296
BstZ17I GTATAC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 46, 96
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 2 cut(s) 487, 514
BtsIMutI CAGTG 3 cut(s) 56, 91, 501
Cac8I GCNNGC 4 cut(s) 156, 213, 235, 415
CaiI CAGNNNCTG 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 44, 250, 335
Csp6I GTAC 1 cut(s) 281
CviAII CATG 3 cut(s) 302, 318, 332
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 3 cut(s) 48, 552, 618
DpnI GATC 4 cut(s) 71, 91, 298, 561
DpnII GATC 4 cut(s) 69, 89, 296, 559
DrdI GACNNNNNNGTC 1 cut(s) 613
DseDI GACNNNNNNGTC 1 cut(s) 613
EaeI YGGCCR 1 cut(s) 94
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
EciI GGCGGA 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 301
Eco31I GGTCTC 2 cut(s) 122, 264
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 2 cut(s) 250, 335
Eco57I CTGAAG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 44
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 3 cut(s) 305, 321, 335
FaiI YATR 8 cut(s) 189, 267, 279, 303, 311, 319, 333, 542
FalI AAGNNNNNCTT 2 cut(s) 446, 478
FaqI GGGAC 1 cut(s) 236
FatI CATG 3 cut(s) 301, 317, 331
FblI GTMKAC 1 cut(s) 310
Fnu4HI GCNGC 4 cut(s) 55, 228, 231, 411
FokI GGATG 2 cut(s) 474, 521
Fsp4HI GCNGC 4 cut(s) 55, 228, 231, 411
GluI GCNGC 4 cut(s) 55, 228, 231, 411
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 2 cut(s) 46, 96
HapII CCGG 2 cut(s) 93, 338
Hin1II CATG 3 cut(s) 305, 321, 335
HindIII AAGCTT 2 cut(s) 107, 152
HinfI GANTC 3 cut(s) 76, 122, 146
HpaII CCGG 2 cut(s) 93, 338
HphI GGTGA 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 3 cut(s) 132, 175, 619
Hpy188III TCNNGA 4 cut(s) 73, 119, 143, 583
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 319, 337, 448, 501
HpyCH4III ACNGT 2 cut(s) 478, 505
HpyCH4IV ACGT 2 cut(s) 99, 177
HpyCH4V TGCA 4 cut(s) 227, 401, 413, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 608
HpyF3I CTNAG 3 cut(s) 48, 552, 618
HpySE526I ACGT 2 cut(s) 99, 177
Hsp92II CATG 3 cut(s) 305, 321, 335
Kzo9I GATC 4 cut(s) 69, 89, 296, 559
LmnI GCTCC 3 cut(s) 199, 428, 548
Lsp1109I GCAGC 4 cut(s) 41, 217, 239, 397
LweI GCATC 1 cut(s) 181
MaeII ACGT 2 cut(s) 99, 177
MaeIII GTNAC 2 cut(s) 458, 499
MalI GATC 4 cut(s) 71, 91, 298, 561
MboI GATC 4 cut(s) 69, 89, 296, 559
MboII GAAGA 3 cut(s) 44, 365, 608
MflI RGATCY 2 cut(s) 89, 296
MluCI AATT 2 cut(s) 35, 590
MlyI GAGTC 2 cut(s) 116, 140
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 4 cut(s) 57, 198, 294, 592
MseI TTAA 2 cut(s) 360, 525
MspA1I CMGCKG 2 cut(s) 230, 290
MspI CCGG 2 cut(s) 93, 338
MwoI GCNNNNNNNGC 2 cut(s) 407, 608
NcoI CCATGG 1 cut(s) 301
NdeII GATC 4 cut(s) 69, 89, 296, 559
NlaIII CATG 3 cut(s) 305, 321, 335
NlaIV GGNNCC 5 cut(s) 91, 252, 298, 430, 531
NmuCI GTSAC 2 cut(s) 458, 499
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PfeI GAWTC 1 cut(s) 76
PflMI CCANNNNNTGG 2 cut(s) 86, 293
PkrI GCNGC 4 cut(s) 56, 229, 232, 412
PleI GAGTC 2 cut(s) 116, 140
PpsI GAGTC 2 cut(s) 116, 140
PspN4I GGNNCC 5 cut(s) 91, 252, 298, 430, 531
PspPI GGNCC 3 cut(s) 44, 250, 335
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 2 cut(s) 89, 296
PvuII CAGCTG 2 cut(s) 230, 290
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SaqAI TTAA 2 cut(s) 360, 525
SatI GCNGC 4 cut(s) 55, 228, 231, 411
Sau3AI GATC 4 cut(s) 69, 89, 296, 559
Sau96I GGNCC 3 cut(s) 44, 250, 335
SchI GAGTC 2 cut(s) 116, 140
SfaNI GCATC 1 cut(s) 181
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 250, 335
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 2 cut(s) 35, 590
SsiI CCGC 2 cut(s) 306, 572
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 478, 505
TaiI ACGT 2 cut(s) 102, 180
TaqI TCGA 2 cut(s) 59, 120
TaqII GACCGA 1 cut(s) 552
TasI AATT 2 cut(s) 35, 590
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 2 cut(s) 360, 525
Tru9I TTAA 2 cut(s) 360, 525
TscAI CASTG 3 cut(s) 56, 91, 508
TseFI GTSAC 2 cut(s) 458, 499
TseI GCWGC 4 cut(s) 54, 227, 230, 410
Tsp45I GTSAC 2 cut(s) 458, 499
TspDTI ATGAA 1 cut(s) 483
TspRI CASTG 3 cut(s) 56, 91, 508
Van91I CCANNNNNTGG 2 cut(s) 86, 293
VpaK11BI GGWCC 2 cut(s) 250, 335
XmiI GTMKAC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.