Rmu_sc0002226.1_g000014

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002226.1
OG0000177
Physical Location & Seq
Reverse (-)
52925 .. 56410
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002226.1_g000014.1.cds

Sequence Viewer

Length: 1131 bp
atgtctggtcctcagtgctgcgagaacccaccgagccttagctcaacctgcggagctggatcagtcactgaaattggaggcttgaaggcctatgttactggcccttctgattccaagcttgccattctcctggtttctgatatccatggatttgaagcaccaaagttcagggagcttgcagacaaaactgctaccgtttctggattccatgttgtggttccagacttcttttatggagatccattcaatcctgacaaaactgagaggcttgtgtggctacagtctcatggaccagacaaaggatttgaagatgctaaacttgtaattggtgctctaaggaacaaagggatttccacaataggagctgcagggttctgttggggaggtaaggtagttgtggagctatcgaagtctgattacattcaggctgcagtgttgttgcacccttctcgtgtcactgttgatgatattaaaggggttaagtctccaatagccatattgggtgctgagtttgacaagatctctccacctgaactcctgaaacagtttgaggaggttttgtcaacgaagcctgaggtgagtggctatgtgaaaatatttcccggtgttccgcatggatgggcagtgaggtataaagatgaggatgagactgctgtcaaacttgctaatgaagctcatcaagatatgttggattggtttactaagtatgacaaaggatttgaagatgctaaacttgtaattggtgctctaaggaacaaagggatttccacaataggagctgcagggttctgttggggaggtaaggtagttgtggagctatcgaagtctgattacattcaggctgcagtgttgttgcacccttctcgtgtcactgttgatgatattaaaggggttaaggctccaatagccatattgggtgctgagtttgacaagatctctccacctgaactcctgaaacagtttgaggaggttttgtcaacgaagcctgaggtgagtggctatgtgaaaatatttcccggtgttccgcatggatgggcagtgaggtataaagatgaggatgagactgctgtcaaacttgctaatgaagctcatcaagatatgttggattggtttactaagtatgtgcggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

376

Amino Acids

40.92

Weight (kDa)

5.57

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 214
AciI CCGC 4 cut(s) 51, 611, 1025, 1126
AclWI GGATC 2 cut(s) 67, 233
AfiI CCNNNNNNNGG 2 cut(s) 214, 299
AgsI TTSAA 5 cut(s) 85, 155, 247, 308, 722
AjnI CCWGG 1 cut(s) 129
Alw21I GWGCWC 2 cut(s) 334, 748
Alw26I GTCTC 4 cut(s) 288, 489, 641, 1055
AlwI GGATC 2 cut(s) 67, 233
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 87, 100
ApeKI GCWGC 5 cut(s) 18, 365, 428, 779, 842
ArsI GACNNNNNNTTYG 4 cut(s) 287, 319, 701, 733
AspS9I GGNCC 3 cut(s) 8, 101, 290
AsuC2I CCSGG 2 cut(s) 603, 1017
AsuHPI GGTGA 2 cut(s) 589, 1003
AvaII GGWCC 2 cut(s) 8, 290
AxyI CCTNAGG 2 cut(s) 573, 987
BarI GAAGNNNNNNTAC 4 cut(s) 401, 433, 815, 847
BauI CACGAG 2 cut(s) 450, 864
Bbv12I GWGCWC 2 cut(s) 334, 748
BbvI GCAGC 5 cut(s) 5, 352, 415, 766, 829
BccI CCATC 2 cut(s) 612, 1026
BcgI CGANNNNNNTGC 4 cut(s) 431, 465, 845, 879
BciT130I CCWGG 1 cut(s) 131
BcnI CCSGG 2 cut(s) 603, 1017
BcoDI GTCTC 4 cut(s) 288, 489, 641, 1055
BfmI CTRYAG 5 cut(s) 278, 366, 429, 780, 843
BfuAI ACCTGC 1 cut(s) 56
BglII AGATCT 2 cut(s) 519, 933
BisI GCNGC 5 cut(s) 19, 366, 429, 780, 843
BlsI GCNGC 5 cut(s) 20, 367, 430, 781, 844
Bme1390I CCNGG 3 cut(s) 131, 603, 1017
Bme18I GGWCC 2 cut(s) 8, 290
BmgT120I GGNCC 3 cut(s) 8, 101, 290
BmiI GGNNCC 2 cut(s) 219, 900
BmrFI CCNGG 3 cut(s) 131, 603, 1017
BmsI GCATC 2 cut(s) 301, 715
BoxI GACNNNNGTC 2 cut(s) 653, 1067
Bpu10I CCTNAGC 1 cut(s) 38
BpuMI CCSGG 2 cut(s) 603, 1017
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 299
Bse1I ACTGG 1 cut(s) 103
Bse21I CCTNAGG 2 cut(s) 573, 987
BseBI CCWGG 1 cut(s) 131
BseDI CCNNGG 1 cut(s) 145
BseGI GGATG 4 cut(s) 623, 649, 1037, 1063
BseLI CCNNNNNNNGG 2 cut(s) 214, 299
BseMII CTCAG 6 cut(s) 26, 252, 498, 564, 912, 978
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 2 cut(s) 566, 980
BseXI GCAGC 5 cut(s) 5, 352, 415, 766, 829
BshFI GGCC 2 cut(s) 89, 102
BsiHKAI GWGCWC 2 cut(s) 334, 748
BsiSI CCGG 2 cut(s) 603, 1017
BslI CCNNNNNNNGG 2 cut(s) 214, 299
BsmAI GTCTC 4 cut(s) 288, 489, 641, 1055
BsnI GGCC 2 cut(s) 89, 102
Bsp1286I GDGCHC 2 cut(s) 334, 748
Bsp143I GATC 4 cut(s) 59, 238, 519, 933
Bsp19I CCATGG 1 cut(s) 145
BspACI CCGC 4 cut(s) 51, 611, 1025, 1126
BspANI GGCC 2 cut(s) 89, 102
BspCNI CTCAG 6 cut(s) 25, 253, 499, 565, 913, 979
BspLI GGNNCC 2 cut(s) 219, 900
BspMAI CTGCAG 4 cut(s) 370, 433, 784, 847
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 67, 233
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 4 cut(s) 59, 238, 519, 933
BssSI CACGAG 2 cut(s) 450, 864
BssT1I CCWWGG 1 cut(s) 145
Bst2BI CACGAG 2 cut(s) 450, 864
Bst2UI CCWGG 1 cut(s) 131
Bst4CI ACNGT 6 cut(s) 196, 282, 460, 546, 874, 960
BstC8I GCNNGC 2 cut(s) 120, 177
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 4 cut(s) 623, 649, 1037, 1063
BstKTI GATC 4 cut(s) 62, 241, 522, 936
BstMAI GTCTC 4 cut(s) 288, 489, 641, 1055
BstMBI GATC 4 cut(s) 59, 238, 519, 933
BstMWI GCNNNNNNNGC 5 cut(s) 48, 274, 671, 905, 1085
BstNI CCWGG 1 cut(s) 131
BstPAI GACNNNNGTC 2 cut(s) 653, 1067
BstSCI CCNGG 3 cut(s) 129, 601, 1015
BstSFI CTRYAG 5 cut(s) 278, 366, 429, 780, 843
BstV1I GCAGC 5 cut(s) 5, 352, 415, 766, 829
BstX2I RGATCY 3 cut(s) 238, 519, 933
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 3 cut(s) 238, 519, 933
Bsu36I CCTNAGG 2 cut(s) 573, 987
BsuRI GGCC 2 cut(s) 89, 102
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 4 cut(s) 623, 649, 1037, 1063
BtsI GCAGTG 4 cut(s) 438, 630, 852, 1044
BtsIMutI CAGTG 8 cut(s) 20, 66, 438, 456, 630, 852, 870, 1044
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 120, 177
CaiI CAGNNNCTG 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 8, 101, 290
CviAII CATG 5 cut(s) 146, 209, 287, 614, 1028
DpnI GATC 4 cut(s) 61, 240, 521, 935
DpnII GATC 4 cut(s) 59, 238, 519, 933
Eco130I CCWWGG 1 cut(s) 145
Eco147I AGGCCT 1 cut(s) 89
Eco32I GATATC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 8, 290
Eco81I CCTNAGG 2 cut(s) 573, 987
EcoRII CCWGG 1 cut(s) 129
EcoRV GATATC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
FaeI CATG 5 cut(s) 149, 212, 290, 617, 1031
FatI CATG 5 cut(s) 145, 208, 286, 613, 1027
Fnu4HI GCNGC 5 cut(s) 19, 366, 429, 780, 843
FokI GGATG 4 cut(s) 630, 656, 1044, 1070
Fsp4HI GCNGC 5 cut(s) 19, 366, 429, 780, 843
GluI GCNGC 5 cut(s) 19, 366, 429, 780, 843
HaeIII GGCC 2 cut(s) 89, 102
HapII CCGG 2 cut(s) 603, 1017
Hin1II CATG 5 cut(s) 149, 212, 290, 617, 1031
HincII GTYRAC 2 cut(s) 564, 978
HindII GTYRAC 2 cut(s) 564, 978
HindIII AAGCTT 1 cut(s) 116
HinfI GANTC 2 cut(s) 110, 204
HpaII CCGG 2 cut(s) 603, 1017
HphI GGTGA 2 cut(s) 589, 1003
Hpy166II GTNNAC 4 cut(s) 564, 699, 978, 1113
Hpy188I TCNGA 4 cut(s) 109, 139, 415, 829
Hpy188III TCNNGA 7 cut(s) 201, 221, 251, 538, 680, 952, 1094
Hpy8I GTNNAC 4 cut(s) 564, 699, 978, 1113
HpyAV CCTTC 4 cut(s) 79, 114, 456, 870
HpyCH4III ACNGT 6 cut(s) 196, 282, 460, 546, 874, 960
HpyCH4V TGCA 7 cut(s) 179, 368, 431, 442, 782, 845, 856
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 274, 671, 905, 1085
Hsp92II CATG 5 cut(s) 149, 212, 290, 617, 1031
Kzo9I GATC 4 cut(s) 59, 238, 519, 933
LmnI GCTCC 7 cut(s) 53, 172, 362, 400, 776, 814, 904
Lsp1109I GCAGC 5 cut(s) 5, 352, 415, 766, 829
LweI GCATC 2 cut(s) 301, 715
MaeIII GTNAC 4 cut(s) 64, 94, 454, 868
MalI GATC 4 cut(s) 61, 240, 521, 935
MboI GATC 4 cut(s) 59, 238, 519, 933
MboII GAAGA 2 cut(s) 320, 734
MflI RGATCY 3 cut(s) 238, 519, 933
MhlI GDGCHC 2 cut(s) 334, 748
MluCI AATT 3 cut(s) 72, 324, 738
MmeI TCCRAC 2 cut(s) 669, 1083
MseI TTAA 4 cut(s) 471, 480, 885, 894
MspI CCGG 2 cut(s) 603, 1017
MspR9I CCNGG 3 cut(s) 131, 603, 1017
MvaI CCWGG 1 cut(s) 131
MwoI GCNNNNNNNGC 5 cut(s) 48, 274, 671, 905, 1085
NciI CCSGG 2 cut(s) 603, 1017
NcoI CCATGG 1 cut(s) 145
NdeII GATC 4 cut(s) 59, 238, 519, 933
NlaIII CATG 5 cut(s) 149, 212, 290, 617, 1031
NlaIV GGNNCC 2 cut(s) 219, 900
NmuCI GTSAC 3 cut(s) 64, 454, 868
PceI AGGCCT 1 cut(s) 89
PfeI GAWTC 2 cut(s) 110, 204
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 5 cut(s) 20, 367, 430, 781, 844
PshAI GACNNNNGTC 2 cut(s) 653, 1067
Psp6I CCWGG 1 cut(s) 129
PspGI CCWGG 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 219, 900
PspPI GGNCC 3 cut(s) 8, 101, 290
PstI CTGCAG 4 cut(s) 370, 433, 784, 847
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 3 cut(s) 238, 519, 933
SaqAI TTAA 4 cut(s) 471, 480, 885, 894
SatI GCNGC 5 cut(s) 19, 366, 429, 780, 843
Sau3AI GATC 4 cut(s) 59, 238, 519, 933
Sau96I GGNCC 3 cut(s) 8, 101, 290
ScrFI CCNGG 3 cut(s) 131, 603, 1017
SduI GDGCHC 2 cut(s) 334, 748
SfaNI GCATC 2 cut(s) 301, 715
SfcI CTRYAG 5 cut(s) 278, 366, 429, 780, 843
SinI GGWCC 2 cut(s) 8, 290
Sse9I AATT 3 cut(s) 72, 324, 738
SseBI AGGCCT 1 cut(s) 89
SsiI CCGC 4 cut(s) 51, 611, 1025, 1126
SspI AATATT 2 cut(s) 597, 1011
StuI AGGCCT 1 cut(s) 89
StyD4I CCNGG 3 cut(s) 129, 601, 1015
StyI CCWWGG 1 cut(s) 145
TaaI ACNGT 6 cut(s) 196, 282, 460, 546, 874, 960
TaqI TCGA 2 cut(s) 407, 821
TasI AATT 3 cut(s) 72, 324, 738
TfiI GAWTC 2 cut(s) 110, 204
Tru1I TTAA 4 cut(s) 471, 480, 885, 894
Tru9I TTAA 4 cut(s) 471, 480, 885, 894
TscAI CASTG 8 cut(s) 20, 73, 438, 463, 630, 852, 877, 1044
TseFI GTSAC 3 cut(s) 64, 454, 868
TseI GCWGC 5 cut(s) 18, 365, 428, 779, 842
Tsp45I GTSAC 3 cut(s) 64, 454, 868
TspDTI ATGAA 2 cut(s) 684, 1098
TspRI CASTG 8 cut(s) 20, 73, 438, 463, 630, 852, 877, 1044
Van91I CCANNNNNTGG 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 8, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.