Rh1AG139200

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000177
Physical Location & Seq
Reverse (-)
26368965 .. 26384606
15642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG139200.1

Sequence Viewer

Length: 333 bp
ATGTTGAGACGTTGCAGGACCATAGAGATAGTGTCAGACTGTCAGGTGCTGGTGGTGACTAATTCAACGGGTTGTCACTCGAAAATTGCAGACAAAGTTGCTAGCAAGGCTGGATTCAATGTTGTGGTTCCAGACTTCTTTTATGGAGATCCATACAATCCTAACAACACTCAGAGGAATATGACAGACTGGCTAAGGGAACATGGAACAGACAAAGGTTTTGAAGATGCTAAACGTGTAATTGCTGCTCTAAAGAACAAAGGGGTATCCGGGATAGGAGCTGCAGGGTTCTGTTGGGGCGGTAAAAACTCTACCTCCCACTTTTATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

110

Amino Acids

12.09

Weight (kDa)

9.0

Isoelectric Point (pI)

25.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 16 - 104 1.3e-10 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 300
AclWI GGATC 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 66, 118, 224
AluBI AGCT 1 cut(s) 281
AluI AGCT 1 cut(s) 281
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 245, 281
ArsI GACNNNNNNTTYG 2 cut(s) 203, 235
AspS9I GGNCC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 67
AsuNHI GCTAGC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 232, 268
BciVI GTATCC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 282
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 2 cut(s) 246, 282
BlsI GCNGC 2 cut(s) 247, 283
Bme1390I CCNGG 1 cut(s) 271
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 1 cut(s) 217
BmtI GCTAGC 1 cut(s) 105
Bpu10I CCTNAGC 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse1I ACTGG 1 cut(s) 194
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 232, 268
BsiSI CCGG 1 cut(s) 270
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 300
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 129
BspMAI CTGCAG 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 194
BssMI GATC 1 cut(s) 148
Bst4CI ACNGT 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 171, 194
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 282
BstV1I GCAGC 2 cut(s) 232, 268
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuI GTATCC 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 103
CaiI CAGNNNCTG 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 18
CviAII CATG 1 cut(s) 203
CviJI RGCY 3 cut(s) 110, 193, 281
CviKI_1 RGCY 3 cut(s) 110, 193, 281
DdeI CTNAG 2 cut(s) 171, 194
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 18
FaeI CATG 1 cut(s) 206
FaiI YATR 6 cut(s) 23, 144, 154, 182, 204, 327
FatI CATG 1 cut(s) 202
Fnu4HI GCNGC 2 cut(s) 246, 282
Fsp4HI GCNGC 2 cut(s) 246, 282
FspBI CTAG 1 cut(s) 102
GluI GCNGC 2 cut(s) 246, 282
HapII CCGG 1 cut(s) 270
Hin1II CATG 1 cut(s) 206
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 37, 174
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 2 cut(s) 10, 235
HpyCH4V TGCA 3 cut(s) 15, 89, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 171, 194
HpySE526I ACGT 2 cut(s) 10, 235
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 29, 35, 96, 144, 175, 270, 283
Lsp1109I GCAGC 2 cut(s) 232, 268
LweI GCATC 1 cut(s) 217
MaeI CTAG 1 cut(s) 102
MaeII ACGT 2 cut(s) 10, 235
MaeIII GTNAC 2 cut(s) 55, 74
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 1 cut(s) 236
MflI RGATCY 1 cut(s) 148
MluCI AATT 3 cut(s) 61, 84, 240
MnlI CCTC 2 cut(s) 168, 325
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 107
NciI CCSGG 1 cut(s) 271
NdeII GATC 1 cut(s) 148
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 129
NmuCI GTSAC 2 cut(s) 55, 74
PfeI GAWTC 1 cut(s) 114
PfoI TCCNGGA 1 cut(s) 269
PkrI GCNGC 2 cut(s) 247, 283
PspN4I GGNNCC 1 cut(s) 129
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 324
SatI GCNGC 2 cut(s) 246, 282
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 271
SetI ASST 6 cut(s) 13, 48, 220, 238, 283, 317
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 3 cut(s) 61, 84, 240
SsiI CCGC 1 cut(s) 300
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 2 cut(s) 13, 238
TaqI TCGA 1 cut(s) 80
TasI AATT 3 cut(s) 61, 84, 240
TfiI GAWTC 1 cut(s) 114
TseFI GTSAC 2 cut(s) 55, 74
TseI GCWGC 2 cut(s) 245, 281
Tsp45I GTSAC 2 cut(s) 55, 74
VpaK11BI GGWCC 1 cut(s) 18
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.