MD13G1181500.v1.1

1,4-beta-D-glucanase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000177
Physical Location & Seq
Reverse (-)
15105591 .. 15108778
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1181500.v1.1.491

Sequence Viewer

Length: 621 bp
ATGTCAAGCCCTCAGTGCTGCTCCCACCCACCAACCCTGAACCCATCGAGTGGCTCCGGCCTCGTCGAGAAGTTCGACGGTCTCGACACCTATCTCATCGGCTCCCCTGACTCCAAGATGGCCGTTCTTTTTGTCTCTGATGTTTTTGGATATGAGGCTCCAAACTTGAGGAAGCTTGCAGACAAACTTGCGGCTACTGGCTTTTTTATTGCGGTCCCTGACTTCTTTTACGGAGACCCTTTTGAATTAGGAGAGGACGGATTTGCCGCTCTCCCTGGCTGGATAAAACATCATGCACCGGACAAAGCATTCGAAGATGCAAAACCAGTACTTGAAGCTTTAAGAAGTAAAGGTGCTTCTAAAGTTGGTGCTGTAGGATTCTGTTATGGGGTTGTGGTTGAACTTTCAAAGCATGACTATATCAAAGCTGCTTCTTTGTGTCATCCTTCATTTGTCACTCTGGATGATATCATGGCGGTTAAGGTTCCCACTCAAATACTTGGAGCTGAGATTGATGGTACGTCTCCACCTGAACTCGTGAAACAATTTGAGGAGGCTTTAGCTGCAAAGTCTGAGATTACAAGCCAAGTGAAGATATTCCCGAAAGTGGAACACGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
ko00361 ko00364 ko00623 ko01100 ko01110 ko01120 ko01130 map00361 map00364 map00623 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
DLH

Protein Analysis

207

Amino Acids

22.05

Weight (kDa)

5.08

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DLH PF01738 29 - 206 1.1e-21 Dienelactone hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000177)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23570 AT3G23570 AT3G23570 AT3G23600 AT3G23600
fragaria_vesca FvH4_2g23960 FvH4_2g23960 FvH4_2g23960 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14311 FvH4_4g14330 FvH4_6g28031 FvH4_6g29270
malus_domestica MD13G1181200.v1.1 MD13G1181300.v1.1 MD13G1181400.v1.1 MD13G1181500.v1.1 MD13G1181600.v1.1 MD13G1181700.v1.1 MD13G1181800.v1.1 MD13G1181900.v1.1 MD15G1403300.v1.1 MD15G1403400.v1.1 MD16G1181900.v1.1 MD16G1182000.v1.1 MD16G1182200.v1.1 MD16G1182300.v1.1 MD16G1182400.v1.1
prunus_persica Prupe.1G149400_v2.0.a1 Prupe.1G149600_v2.0.a1 Prupe.1G149700_v2.0.a1 Prupe.1G149800_v2.0.a1 Prupe.1G549400_v2.0.a1 Prupe.8G245600_v2.0.a1
pyrus_communis pycom13g15640 pycom13g15650 pycom13g15670 pycom13g15700 pycom15g36070 pycom16g15270 pycom16g15300 pycom16g15310
rosa_chinensis RchiOBHm_Chr1g0334461 RchiOBHm_Chr1g0334471 RchiOBHm_Chr2g0131731 RchiOBHm_Chr4g0417881 RchiOBHm_Chr4g0418561 RchiOBHm_Chr4g0418571 RchiOBHm_Chr4g0418581 RchiOBHm_Chr4g0418591 RchiOBHm_Chr4g0418601 RchiOBHm_Chr4g0418621 RchiOBHm_Chr4g0418651 RchiOBHm_Chr4g0418661 RchiOBHm_Chr4g0418671 RchiOBHm_Chr4g0418681 RchiOBHm_Chr4g0418691 RchiOBHm_Chr4g0418701 RchiOBHm_Chr4g0421371 RchiOBHm_Chr6g0291601 RchiOBHm_Chr6g0291611 RchiOBHm_Chr6g0291621 RchiOBHm_Chr6g0291631 RchiOBHm_Chr7g0229821
rosa_laevigata RLG00000007843 RLG00000007844 RLG00000007846 RLG00000007847 RLG00000007849 RLG00000012101 RLG00000012104 RLG00000029451
rosa_multiflora Rmu_sc0000363.1_g000035 Rmu_sc0000935.1_g000003 Rmu_sc0000935.1_g000010 Rmu_sc0002226.1_g000008 Rmu_sc0002226.1_g000014 Rmu_sc0002589.1_g000031 Rmu_sc0003443.1_g000009 Rmu_sc0006431.1_g000001 Rmu_sc0006431.1_g000006 Rmu_sc0006431.1_g000023 Rmu_sc0006705.1_g000014 Rmu_sc0006705.1_g000015 Rmu_sc0006705.1_g000016 Rmu_sc0006705.1_g000017 Rmu_sc0006705.1_g000018 Rmu_sc0014797.1_g000001 Rmu_sc0041885.1_g000001
rosa_roxburghii Rroxscaffold_4G00316820 Rroxscaffold_5G00361830 Rroxscaffold_5G00361840 Rroxscaffold_5G00361850 Rroxscaffold_5G00361860 Rroxscaffold_5G00361880 Rroxscaffold_5G00361890 Rroxscaffold_5G00361900 Rroxscaffold_5G00361910 Rroxscaffold_5G00361920 Rroxscaffold_5G00361930 Rroxscaffold_7G00175910 Rroxscaffold_7G00175930 Rroxscaffold_7G00175940
rosa_rugosa Rorug02G0299300 Rorug04G0154500 Rorug04G0154600 Rorug04G0154700 Rorug06G0220500
rosa_samantha Rh1AG006300 Rh1AG139200 Rh1AG139300 Rh1BG105600 Rh1CG131200 Rh1CG131300 Rh1DG143200 Rh2AG210000 Rh2CG337500 Rh2DG216200 Rh2DG376200 Rh4AG215900 Rh4AG216000 Rh4AG216100 Rh4AG216200 Rh4AG216300 Rh4AG216400 Rh4BG214300 Rh4BG214400 Rh4BG214500 Rh4BG214600 Rh4BG214700 Rh4BG214800 Rh4CG212300 Rh4CG227500 Rh4CG227700 Rh4CG227900 Rh4CG228000 Rh4CG228100 Rh4DG214200 Rh4DG215000 Rh4DG215200 Rh5AG059400 Rh6AG332900 Rh6AG333000 Rh6AG333100 Rh6BG339700 Rh6BG339900 Rh6CG346100 Rh6CG346200 Rh6DG333300 Rh6DG333400 Rh7AG435400 Rh7CG454500
rosa_wichuraiana Rw1G011480 Rw2G028580 Rw4G018270 Rw4G018280 Rw4G018290 Rw4G018360 Rw4G018390 Rw4G018400 Rw4G018410 Rw4G018420 Rw6G028910 Rw6G029000 Rw6G029010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 4 cut(s) 191, 212, 267, 476
AcoI YGGCCR 1 cut(s) 120
AfaI GTAC 2 cut(s) 330, 520
AfiI CCNNNNNNNGG 2 cut(s) 50, 607
AgsI TTSAA 4 cut(s) 245, 335, 401, 408
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 5 cut(s) 175, 338, 428, 506, 563
AluI AGCT 5 cut(s) 175, 338, 428, 506, 563
Alw26I GTCTC 4 cut(s) 86, 139, 228, 528
AoxI GGCC 2 cut(s) 58, 120
ApeKI GCWGC 3 cut(s) 18, 428, 563
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
Asp700I GAANNNNTTC 1 cut(s) 596
AspS9I GGNCC 1 cut(s) 214
AsuII TTCGAA 1 cut(s) 312
AvaII GGWCC 1 cut(s) 214
BarI GAAGNNNNNNTAC 2 cut(s) 340, 372
BauI CACGAG 1 cut(s) 536
BbvI GCAGC 3 cut(s) 5, 415, 550
BccI CCATC 3 cut(s) 52, 112, 509
BceAI ACGGC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 4 cut(s) 86, 139, 228, 528
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 5 cut(s) 19, 192, 267, 429, 564
BlsI GCNGC 5 cut(s) 20, 193, 268, 430, 565
BmcAI AGTACT 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 5 cut(s) 55, 103, 159, 216, 486
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 307
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 187
BsaI GGTCTC 2 cut(s) 86, 228
BsaJI CCNNGG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 607
Bse1I ACTGG 2 cut(s) 202, 326
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 274
BseGI GGATG 2 cut(s) 442, 469
BseLI CCNNNNNNNGG 2 cut(s) 50, 607
BseMII CTCAG 3 cut(s) 26, 498, 564
BseNI ACTGG 2 cut(s) 202, 326
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 3 cut(s) 5, 415, 550
BshFI GGCC 2 cut(s) 60, 122
BsiSI CCGG 2 cut(s) 57, 299
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 50, 607
BsmAI GTCTC 4 cut(s) 86, 139, 228, 528
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 2 cut(s) 60, 122
Bso31I GGTCTC 2 cut(s) 86, 228
Bsp119I TTCGAA 1 cut(s) 312
BspACI CCGC 4 cut(s) 191, 212, 267, 476
BspANI GGCC 2 cut(s) 60, 122
BspCNI CTCAG 3 cut(s) 25, 499, 565
BspLI GGNNCC 5 cut(s) 55, 103, 159, 216, 486
BspT104I TTCGAA 1 cut(s) 312
BspTNI GGTCTC 2 cut(s) 86, 228
BsrBI CCGCTC 1 cut(s) 269
BsrI ACTGG 2 cut(s) 202, 326
BssECI CCNNGG 1 cut(s) 274
BssSI CACGAG 1 cut(s) 536
Bst2BI CACGAG 1 cut(s) 536
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 12, 507, 573
BstF5I GGATG 2 cut(s) 442, 469
BstMAI GTCTC 4 cut(s) 86, 139, 228, 528
BstMWI GCNNNNNNNGC 2 cut(s) 15, 563
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 3 cut(s) 5, 415, 550
BsuRI GGCC 2 cut(s) 60, 122
BtsCI GGATG 2 cut(s) 442, 469
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 2 cut(s) 329, 519
CviAII CATG 3 cut(s) 293, 413, 472
CviQI GTAC 2 cut(s) 329, 519
DdeI CTNAG 3 cut(s) 12, 507, 573
EaeI YGGCCR 1 cut(s) 120
Eco31I GGTCTC 2 cut(s) 86, 228
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 469
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 3 cut(s) 296, 416, 475
FaiI YATR 6 cut(s) 153, 294, 387, 414, 420, 473
FaqI GGGAC 1 cut(s) 200
FatI CATG 3 cut(s) 292, 412, 471
Fnu4HI GCNGC 5 cut(s) 19, 192, 267, 429, 564
FokI GGATG 2 cut(s) 429, 476
Fsp4HI GCNGC 5 cut(s) 19, 192, 267, 429, 564
GluI GCNGC 5 cut(s) 19, 192, 267, 429, 564
HaeIII GGCC 2 cut(s) 60, 122
HapII CCGG 2 cut(s) 57, 299
Hin1II CATG 3 cut(s) 296, 416, 475
HindIII AAGCTT 2 cut(s) 173, 336
HinfI GANTC 2 cut(s) 110, 378
HpaII CCGG 2 cut(s) 57, 299
Hpy188I TCNGA 2 cut(s) 139, 574
Hpy188III TCNNGA 5 cut(s) 67, 83, 461, 538, 601
Hpy99I CGWCG 2 cut(s) 68, 80
HpyAV CCTTC 1 cut(s) 456
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 4 cut(s) 179, 296, 320, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 563
HpyF3I CTNAG 3 cut(s) 12, 507, 573
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 3 cut(s) 296, 416, 475
LmnI GCTCC 5 cut(s) 26, 59, 107, 163, 503
Lsp1109I GCAGC 3 cut(s) 5, 415, 550
LweI GCATC 1 cut(s) 307
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 1 cut(s) 454
MbiI CCGCTC 1 cut(s) 269
MboII GAAGA 2 cut(s) 326, 604
MluCI AATT 2 cut(s) 245, 545
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 7 cut(s) 21, 71, 148, 162, 247, 544, 547
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 2 cut(s) 341, 480
MspI CCGG 2 cut(s) 57, 299
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 308
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 15, 563
NlaIII CATG 3 cut(s) 296, 416, 475
NlaIV GGNNCC 5 cut(s) 55, 103, 159, 216, 486
NmuCI GTSAC 1 cut(s) 454
NspV TTCGAA 1 cut(s) 312
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 81
PctI GAATGC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 378
PflMI CCANNNNNTGG 1 cut(s) 50
PkrI GCNGC 5 cut(s) 20, 193, 268, 430, 565
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 5 cut(s) 55, 103, 159, 216, 486
PspPI GGNCC 1 cut(s) 214
RsaI GTAC 2 cut(s) 330, 520
RsaNI GTAC 2 cut(s) 329, 519
SaqAI TTAA 2 cut(s) 341, 480
SatI GCNGC 5 cut(s) 19, 192, 267, 429, 564
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 276
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 312
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 245, 545
SsiI CCGC 4 cut(s) 191, 212, 267, 476
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 80
TaiI ACGT 1 cut(s) 524
TaqI TCGA 5 cut(s) 47, 66, 75, 84, 312
TasI AATT 2 cut(s) 245, 545
TatI WGTACW 1 cut(s) 328
TauI GCSGC 2 cut(s) 194, 269
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 2 cut(s) 341, 480
Tru9I TTAA 2 cut(s) 341, 480
TscAI CASTG 1 cut(s) 20
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 3 cut(s) 18, 428, 563
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 1 cut(s) 438
TspGWI ACGGA 2 cut(s) 246, 273
TspRI CASTG 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 596
ZrmI AGTACT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.