FvH4_1g00700

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000125
Physical Location & Seq
Forward (+)
365120 .. 366410
1291 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g00700.t1

Sequence Viewer

Length: 735 bp
ATGGGGAGCTATATGACGTTGAATTTGATGGAGCTGGTACCCATGGAACTGGTGGTTGACATCTTAAAGAGAGTGCCTGCAAAGTCAGTGTGTCGCATCCGATGTGTCTCTAAGATGTTGTTAAGCATAATCGACTCCCCCTCTTTTGTTACGCTGCACTTTACTTTTCTACTTGATCCTGATTCTCATCTACCTCCTGATCCCCCTCAATTTATCCTGCATTATAACCTATCTAGCGGACTACGATTCACCTTTCATTCACTTCATTACGACCTTTCCAATGCCCACGGTGCTCAACTTAATCCAAGACTTATTTTGCAGTCATCCAATCTCATATATTACAGTCTACAATTTGTGTTCTGTAACATGTTTTGCATCAAATGGGGCGATCCTGCACTCATCTTCTTGATCGATCCTCTCCGCGGAGAAGTTCTAAAGCTCCCACCCAGTCCAGTTTGTGGTTCATATTCCCACTCAACTTATGTTTCGACTGATGATGATGAATCGGCCACATTAACATTGTTTTTGGATCTGAGAGGACCTGTTGTTACCAAGAATCTTGTCAAATGTCCAATTGAGGGTAAGTTATTCTTTAGGCGAACCATGAGTCTTAATGGGGGCTTGATTTCCCTAAAAAGCTATGCAGATTTCGAGGAAGCAGAAGAGCCAGCTACTTATAGCGATTGGTCTGAAGGAGTAGCAAGCGGGAAGAATTTCTTTTATTTGGCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

245

Amino Acids

27.5

Weight (kDa)

5.95

Isoelectric Point (pI)

51.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 49 2.3e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 458
AccI GTMKAC 1 cut(s) 346
AccII CGCG 1 cut(s) 423
AciI CCGC 4 cut(s) 237, 421, 423, 705
AclWI GGATC 5 cut(s) 170, 194, 383, 407, 537
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 2 cut(s) 22, 712
AcuI CTGAAG 1 cut(s) 711
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 3 cut(s) 422, 458, 578
AflIII ACRYGT 1 cut(s) 366
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 5 cut(s) 9, 34, 439, 639, 671
AluI AGCT 5 cut(s) 9, 34, 439, 639, 671
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 112
AlwI GGATC 5 cut(s) 170, 194, 383, 407, 537
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 2 cut(s) 22, 712
ArsI GACNNNNNNTTYG 4 cut(s) 7, 39, 592, 624
Asp700I GAANNNNTTC 1 cut(s) 713
Asp718I GGTACC 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 539
AsuHPI GGTGA 1 cut(s) 241
AvaII GGWCC 1 cut(s) 539
BanI GGYRCC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 141
BccI CCATC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 112
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme18I GGWCC 1 cut(s) 539
BmgT120I GGNCC 1 cut(s) 539
BmiI GGNNCC 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 2 cut(s) 105, 384
BmuI ACTGGG 1 cut(s) 441
Bsa29I ATCGAT 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 42, 286, 421
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 458, 578
Bse1I ACTGG 3 cut(s) 54, 447, 452
Bse8I GATNNNNATC 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 42, 286, 421
BseGI GGATG 2 cut(s) 96, 323
BseJI GATNNNNATC 1 cut(s) 186
BseLI CCNNNNNNNGG 3 cut(s) 422, 458, 578
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 3 cut(s) 54, 447, 452
BseXI GCAGC 1 cut(s) 141
BsgI GTGCAG 2 cut(s) 140, 378
Bsh1236I CGCG 1 cut(s) 423
BshFI GGCC 1 cut(s) 509
BshNI GGYRCC 1 cut(s) 37
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 295
BslI CCNNNNNNNGG 3 cut(s) 422, 458, 578
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 6 cut(s) 175, 199, 388, 408, 412, 529
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 4 cut(s) 237, 421, 423, 705
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 1 cut(s) 525
BspDI ATCGAT 1 cut(s) 411
BspFNI CGCG 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 5 cut(s) 170, 194, 383, 407, 537
BspQI GCTCTTC 1 cut(s) 657
BspT107I GGYRCC 1 cut(s) 37
BsrI ACTGG 3 cut(s) 54, 447, 452
BssECI CCNNGG 3 cut(s) 42, 286, 421
BssMI GATC 6 cut(s) 175, 199, 388, 408, 412, 529
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 2 cut(s) 290, 344
Bst6I CTCTTC 1 cut(s) 657
BstC8I GCNNGC 3 cut(s) 78, 669, 703
BstDEI CTNAG 2 cut(s) 111, 533
BstDSI CCRYGG 3 cut(s) 42, 286, 421
BstF5I GGATG 2 cut(s) 96, 323
BstFNI CGCG 1 cut(s) 423
BstKTI GATC 6 cut(s) 178, 202, 391, 411, 415, 532
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 6 cut(s) 175, 199, 388, 408, 412, 529
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 370
BstUI CGCG 1 cut(s) 423
BstV1I GCAGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 529
BstXI CCANNNNNNTGG 1 cut(s) 49
BstYI RGATCY 1 cut(s) 529
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 1 cut(s) 509
BsuTUI ATCGAT 1 cut(s) 411
BtgI CCRYGG 3 cut(s) 42, 286, 421
BtsCI GGATG 2 cut(s) 96, 323
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 78, 669, 703
Cfr13I GGNCC 1 cut(s) 539
Cfr42I CCGCGG 1 cut(s) 424
ClaI ATCGAT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 38
CviAII CATG 3 cut(s) 43, 367, 604
CviJI RGCY 8 cut(s) 9, 34, 439, 509, 621, 639, 667, 671
CviKI_1 RGCY 8 cut(s) 9, 34, 439, 509, 621, 639, 667, 671
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 2 cut(s) 111, 533
DpnI GATC 6 cut(s) 177, 201, 390, 410, 414, 531
DpnII GATC 6 cut(s) 175, 199, 388, 408, 412, 529
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 657
EarI CTCTTC 1 cut(s) 657
Eco130I CCWWGG 1 cut(s) 42
Eco47I GGWCC 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 711
EcoO109I RGGNCCY 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 3 cut(s) 46, 370, 607
FalI AAGNNNNNCTT 4 cut(s) 575, 607, 701, 733
FatI CATG 3 cut(s) 42, 366, 603
FauI CCCGC 1 cut(s) 698
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 2 cut(s) 83, 310
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 155
HaeIII GGCC 1 cut(s) 509
Hin1II CATG 3 cut(s) 46, 370, 607
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 6 cut(s) 134, 182, 246, 503, 556, 607
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 58, 347
Hpy188I TCNGA 3 cut(s) 101, 534, 691
Hpy188III TCNNGA 3 cut(s) 179, 197, 406
Hpy8I GTNNAC 2 cut(s) 58, 347
HpyAV CCTTC 1 cut(s) 686
HpyCH4III ACNGT 2 cut(s) 290, 344
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 7 cut(s) 80, 157, 220, 319, 375, 395, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 2 cut(s) 111, 533
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 3 cut(s) 46, 370, 607
KpnI GGTACC 1 cut(s) 41
KspI CCGCGG 1 cut(s) 424
Kzo9I GATC 6 cut(s) 175, 199, 388, 408, 412, 529
LguI GCTCTTC 1 cut(s) 657
LmnI GCTCC 3 cut(s) 6, 31, 444
Lsp1109I GCAGC 1 cut(s) 141
LweI GCATC 2 cut(s) 105, 384
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 148, 362, 547
MalI GATC 6 cut(s) 177, 201, 390, 410, 414, 531
MboI GATC 6 cut(s) 175, 199, 388, 408, 412, 529
MboII GAAGA 3 cut(s) 394, 674, 721
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 5 cut(s) 22, 209, 350, 573, 712
MlyI GAGTC 2 cut(s) 128, 616
MnlI CCTC 7 cut(s) 151, 204, 216, 426, 530, 571, 646
MroXI GAANNNNTTC 1 cut(s) 713
MseI TTAA 5 cut(s) 65, 122, 300, 515, 612
MspA1I CMGCKG 1 cut(s) 423
MunI CAATTG 1 cut(s) 573
MvnI CGCG 1 cut(s) 423
MwoI GCNNNNNNNGC 1 cut(s) 290
NcoI CCATGG 1 cut(s) 42
NdeII GATC 6 cut(s) 175, 199, 388, 408, 412, 529
NlaIII CATG 3 cut(s) 46, 370, 607
NlaIV GGNNCC 1 cut(s) 39
NspI RCATGY 1 cut(s) 370
PciI ACATGT 1 cut(s) 366
PciSI GCTCTTC 1 cut(s) 657
PdmI GAANNNNTTC 1 cut(s) 713
PfeI GAWTC 4 cut(s) 182, 246, 503, 556
PflMI CCANNNNNTGG 1 cut(s) 458
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 2 cut(s) 128, 615
PpsI GAGTC 2 cut(s) 128, 615
PpuMI RGGWCCY 1 cut(s) 539
PscI ACATGT 1 cut(s) 366
PsiI TTATAA 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 539
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 1 cut(s) 539
PspPPI RGGWCCY 1 cut(s) 539
PsuI RGATCY 1 cut(s) 529
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SacII CCGCGG 1 cut(s) 424
SapI GCTCTTC 1 cut(s) 657
SaqAI TTAA 5 cut(s) 65, 122, 300, 515, 612
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 6 cut(s) 175, 199, 388, 408, 412, 529
Sau96I GGNCC 1 cut(s) 539
SchI GAGTC 2 cut(s) 128, 616
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 2 cut(s) 105, 384
Sfr303I CCGCGG 1 cut(s) 424
SgrBI CCGCGG 1 cut(s) 424
SinI GGWCC 1 cut(s) 539
Sse9I AATT 5 cut(s) 22, 209, 350, 573, 712
SsiI CCGC 4 cut(s) 237, 421, 423, 705
SspMI CTAG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 290, 344
TaiI ACGT 1 cut(s) 20
TaqI TCGA 4 cut(s) 132, 411, 488, 651
TasI AATT 5 cut(s) 22, 209, 350, 573, 712
TfiI GAWTC 4 cut(s) 182, 246, 503, 556
Tru1I TTAA 5 cut(s) 65, 122, 300, 515, 612
Tru9I TTAA 5 cut(s) 65, 122, 300, 515, 612
TscAI CASTG 1 cut(s) 93
TseI GCWGC 1 cut(s) 154
TspDTI ATGAA 4 cut(s) 245, 254, 453, 516
TspRI CASTG 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 458
VpaK11BI GGWCC 1 cut(s) 539
XapI RAATTY 2 cut(s) 22, 712
XceI RCATGY 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 346
XmnI GAANNNNTTC 1 cut(s) 713
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.