DNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FBA_1 | PF07734 | 111 - 205 | 1.4e-06 | F-box associated beta propeller domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 198 |
| AccBSI | CCGCTC | 1 cut(s) | 274 |
| AccI | GTMKAC | 1 cut(s) | 111 |
| AccII | CGCG | 1 cut(s) | 507 |
| AciI | CCGC | 2 cut(s) | 272, 505 |
| AclWI | GGATC | 3 cut(s) | 18, 117, 545 |
| AcsI | RAATTY | 2 cut(s) | 62, 435 |
| AcuI | CTGAAG | 1 cut(s) | 586 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 90, 257 |
| AgsI | TTSAA | 6 cut(s) | 61, 67, 136, 247, 256, 598 |
| AhlI | ACTAGT | 1 cut(s) | 424 |
| AjnI | CCWGG | 1 cut(s) | 205 |
| AluBI | AGCT | 2 cut(s) | 107, 456 |
| AluI | AGCT | 2 cut(s) | 107, 456 |
| Alw21I | GWGCWC | 1 cut(s) | 649 |
| Alw26I | GTCTC | 1 cut(s) | 516 |
| AlwI | GGATC | 3 cut(s) | 18, 117, 545 |
| Ama87I | CYCGRG | 2 cut(s) | 396, 642 |
| ApeKI | GCWGC | 2 cut(s) | 72, 104 |
| ApoI | RAATTY | 2 cut(s) | 62, 435 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 267 |
| AspLEI | GCGC | 3 cut(s) | 194, 213, 509 |
| AvaI | CYCGRG | 2 cut(s) | 396, 642 |
| BaeGI | GKGCMC | 1 cut(s) | 452 |
| BauI | CACGAG | 1 cut(s) | 457 |
| Bbv12I | GWGCWC | 1 cut(s) | 649 |
| BbvI | GCAGC | 2 cut(s) | 84, 116 |
| BccI | CCATC | 2 cut(s) | 214, 329 |
| BciT130I | CCWGG | 1 cut(s) | 207 |
| BcoDI | GTCTC | 1 cut(s) | 516 |
| BcuI | ACTAGT | 1 cut(s) | 424 |
| BfaI | CTAG | 1 cut(s) | 425 |
| BisI | GCNGC | 3 cut(s) | 73, 105, 505 |
| BlsI | GCNGC | 3 cut(s) | 74, 106, 506 |
| Bme1390I | CCNGG | 1 cut(s) | 207 |
| BmeT110I | CYCGRG | 2 cut(s) | 396, 642 |
| BmiI | GGNNCC | 1 cut(s) | 480 |
| BmrFI | CCNGG | 1 cut(s) | 207 |
| BmsI | GCATC | 1 cut(s) | 352 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 458, 490 |
| BpmI | CTGGAG | 1 cut(s) | 644 |
| Bsa29I | ATCGAT | 1 cut(s) | 410 |
| BsaI | GGTCTC | 1 cut(s) | 516 |
| BsaJI | CCNNGG | 2 cut(s) | 206, 474 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 564, 594 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 90, 257 |
| Bse1I | ACTGG | 2 cut(s) | 564, 627 |
| Bse3DI | GCAATG | 1 cut(s) | 50 |
| BseBI | CCWGG | 1 cut(s) | 207 |
| BseCI | ATCGAT | 1 cut(s) | 410 |
| BseDI | CCNNGG | 2 cut(s) | 206, 474 |
| BseGI | GGATG | 1 cut(s) | 225 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 90, 257 |
| BseMI | GCAATG | 1 cut(s) | 50 |
| BseNI | ACTGG | 2 cut(s) | 564, 627 |
| BseRI | GAGGAG | 1 cut(s) | 588 |
| BseSI | GKGCMC | 1 cut(s) | 452 |
| BseXI | GCAGC | 2 cut(s) | 84, 116 |
| Bsh1236I | CGCG | 1 cut(s) | 507 |
| BshVI | ATCGAT | 1 cut(s) | 410 |
| BsiHKAI | GWGCWC | 1 cut(s) | 649 |
| BsiHKCI | CYCGRG | 2 cut(s) | 396, 642 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 90, 257 |
| BsmAI | GTCTC | 1 cut(s) | 516 |
| Bso31I | GGTCTC | 1 cut(s) | 516 |
| BsoBI | CYCGRG | 2 cut(s) | 396, 642 |
| Bsp1286I | GDGCHC | 2 cut(s) | 452, 649 |
| Bsp143I | GATC | 3 cut(s) | 10, 122, 550 |
| BspACI | CCGC | 2 cut(s) | 272, 505 |
| BspDI | ATCGAT | 1 cut(s) | 410 |
| BspFNI | CGCG | 1 cut(s) | 507 |
| BspLI | GGNNCC | 1 cut(s) | 480 |
| BspPI | GGATC | 3 cut(s) | 18, 117, 545 |
| BspTNI | GGTCTC | 1 cut(s) | 516 |
| BsrBI | CCGCTC | 1 cut(s) | 274 |
| BsrDI | GCAATG | 1 cut(s) | 50 |
| BsrI | ACTGG | 2 cut(s) | 564, 627 |
| BssECI | CCNNGG | 2 cut(s) | 206, 474 |
| BssMI | GATC | 3 cut(s) | 10, 122, 550 |
| BssSI | CACGAG | 1 cut(s) | 457 |
| Bst2BI | CACGAG | 1 cut(s) | 457 |
| Bst2UI | CCWGG | 1 cut(s) | 207 |
| Bst6I | CTCTTC | 2 cut(s) | 607, 643 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 234 |
| BstF5I | GGATG | 1 cut(s) | 225 |
| BstFNI | CGCG | 1 cut(s) | 507 |
| BstHHI | GCGC | 3 cut(s) | 194, 213, 509 |
| BstKTI | GATC | 3 cut(s) | 13, 125, 553 |
| BstMAI | GTCTC | 1 cut(s) | 516 |
| BstMBI | GATC | 3 cut(s) | 10, 122, 550 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 234, 504 |
| BstNI | CCWGG | 1 cut(s) | 207 |
| BstNSI | RCATGY | 2 cut(s) | 104, 653 |
| BstSCI | CCNGG | 1 cut(s) | 205 |
| BstSLI | GKGCMC | 1 cut(s) | 452 |
| BstUI | CGCG | 1 cut(s) | 507 |
| BstV1I | GCAGC | 2 cut(s) | 84, 116 |
| BstX2I | RGATCY | 1 cut(s) | 122 |
| BstYI | RGATCY | 1 cut(s) | 122 |
| Bsu15I | ATCGAT | 1 cut(s) | 410 |
| BsuTUI | ATCGAT | 1 cut(s) | 410 |
| BtsCI | GGATG | 1 cut(s) | 225 |
| CfoI | GCGC | 3 cut(s) | 194, 213, 509 |
| ClaI | ATCGAT | 1 cut(s) | 410 |
| CviAII | CATG | 4 cut(s) | 90, 101, 234, 650 |
| CviJI | RGCY | 4 cut(s) | 107, 155, 456, 504 |
| CviKI_1 | RGCY | 4 cut(s) | 107, 155, 456, 504 |
| DpnI | GATC | 3 cut(s) | 12, 124, 552 |
| DpnII | GATC | 3 cut(s) | 10, 122, 550 |
| Eam1104I | CTCTTC | 2 cut(s) | 607, 643 |
| EarI | CTCTTC | 2 cut(s) | 607, 643 |
| Eco31I | GGTCTC | 1 cut(s) | 516 |
| Eco57I | CTGAAG | 1 cut(s) | 586 |
| Eco88I | CYCGRG | 2 cut(s) | 396, 642 |
| EcoRII | CCWGG | 1 cut(s) | 205 |
| FaeI | CATG | 4 cut(s) | 93, 104, 237, 653 |
| FatI | CATG | 4 cut(s) | 89, 100, 233, 649 |
| FblI | GTMKAC | 1 cut(s) | 111 |
| Fnu4HI | GCNGC | 3 cut(s) | 73, 105, 505 |
| FokI | GGATG | 1 cut(s) | 232 |
| Fsp4HI | GCNGC | 3 cut(s) | 73, 105, 505 |
| FspBI | CTAG | 1 cut(s) | 425 |
| GlaI | GCGC | 3 cut(s) | 193, 212, 508 |
| GluI | GCNGC | 3 cut(s) | 73, 105, 505 |
| GsuI | CTGGAG | 1 cut(s) | 644 |
| HhaI | GCGC | 3 cut(s) | 194, 213, 509 |
| Hin1II | CATG | 4 cut(s) | 93, 104, 237, 653 |
| Hin6I | GCGC | 3 cut(s) | 192, 211, 507 |
| HinP1I | GCGC | 3 cut(s) | 192, 211, 507 |
| Hpy166II | GTNNAC | 2 cut(s) | 112, 422 |
| Hpy188I | TCNGA | 1 cut(s) | 605 |
| Hpy188III | TCNNGA | 5 cut(s) | 33, 185, 396, 548, 642 |
| Hpy8I | GTNNAC | 2 cut(s) | 112, 422 |
| HpyAV | CCTTC | 3 cut(s) | 142, 250, 564 |
| HpyCH4IV | ACGT | 1 cut(s) | 329 |
| HpyCH4V | TGCA | 5 cut(s) | 55, 104, 365, 515, 653 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 234, 504 |
| HpySE526I | ACGT | 1 cut(s) | 329 |
| Hsp92II | CATG | 4 cut(s) | 93, 104, 237, 653 |
| HspAI | GCGC | 3 cut(s) | 192, 211, 507 |
| Kzo9I | GATC | 3 cut(s) | 10, 122, 550 |
| LmnI | GCTCC | 2 cut(s) | 93, 279 |
| LpnPI | CCDG | 7 cut(s) | 18, 192, 219, 539, 561, 577, 608 |
| Lsp1109I | GCAGC | 2 cut(s) | 84, 116 |
| LweI | GCATC | 1 cut(s) | 352 |
| MaeI | CTAG | 1 cut(s) | 425 |
| MaeII | ACGT | 1 cut(s) | 329 |
| MaeIII | GTNAC | 1 cut(s) | 427 |
| MalI | GATC | 3 cut(s) | 12, 124, 552 |
| MbiI | CCGCTC | 1 cut(s) | 274 |
| MboI | GATC | 3 cut(s) | 10, 122, 550 |
| MboII | GAAGA | 4 cut(s) | 260, 283, 624, 630 |
| MflI | RGATCY | 1 cut(s) | 122 |
| MhlI | GDGCHC | 2 cut(s) | 452, 649 |
| MluCI | AATT | 6 cut(s) | 28, 56, 62, 199, 435, 490 |
| MnlI | CCTC | 6 cut(s) | 32, 210, 328, 484, 566, 619 |
| MroXI | GAANNNNTTC | 1 cut(s) | 267 |
| MseI | TTAA | 1 cut(s) | 494 |
| MspA1I | CMGCKG | 1 cut(s) | 107 |
| MspR9I | CCNGG | 1 cut(s) | 207 |
| MvaI | CCWGG | 1 cut(s) | 207 |
| MvnI | CGCG | 1 cut(s) | 507 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 234, 504 |
| NdeII | GATC | 3 cut(s) | 10, 122, 550 |
| NlaIII | CATG | 4 cut(s) | 93, 104, 237, 653 |
| NlaIV | GGNNCC | 1 cut(s) | 480 |
| NmuCI | GTSAC | 1 cut(s) | 427 |
| NspI | RCATGY | 2 cut(s) | 104, 653 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 394 |
| PdmI | GAANNNNTTC | 1 cut(s) | 267 |
| PkrI | GCNGC | 3 cut(s) | 74, 106, 506 |
| PsiI | TTATAA | 1 cut(s) | 198 |
| Psp6I | CCWGG | 1 cut(s) | 205 |
| PspGI | CCWGG | 1 cut(s) | 205 |
| PspN4I | GGNNCC | 1 cut(s) | 480 |
| PsuI | RGATCY | 1 cut(s) | 122 |
| PvuII | CAGCTG | 1 cut(s) | 107 |
| SaqAI | TTAA | 1 cut(s) | 494 |
| SatI | GCNGC | 3 cut(s) | 73, 105, 505 |
| Sau3AI | GATC | 3 cut(s) | 10, 122, 550 |
| ScrFI | CCNGG | 1 cut(s) | 207 |
| SduI | GDGCHC | 2 cut(s) | 452, 649 |
| SetI | ASST | 6 cut(s) | 44, 86, 109, 332, 458, 487 |
| SfaNI | GCATC | 1 cut(s) | 352 |
| SpeI | ACTAGT | 1 cut(s) | 424 |
| Sse9I | AATT | 6 cut(s) | 28, 56, 62, 199, 435, 490 |
| SsiI | CCGC | 2 cut(s) | 272, 505 |
| SspMI | CTAG | 1 cut(s) | 425 |
| StyD4I | CCNGG | 1 cut(s) | 205 |
| TaiI | ACGT | 1 cut(s) | 332 |
| TaqI | TCGA | 2 cut(s) | 333, 410 |
| TasI | AATT | 6 cut(s) | 28, 56, 62, 199, 435, 490 |
| TauI | GCSGC | 1 cut(s) | 507 |
| Tru1I | TTAA | 1 cut(s) | 494 |
| Tru9I | TTAA | 1 cut(s) | 494 |
| TseFI | GTSAC | 1 cut(s) | 427 |
| TseI | GCWGC | 2 cut(s) | 72, 104 |
| Tsp45I | GTSAC | 1 cut(s) | 427 |
| TspDTI | ATGAA | 1 cut(s) | 283 |
| TspGWI | ACGGA | 1 cut(s) | 534 |
| XapI | RAATTY | 2 cut(s) | 62, 435 |
| XceI | RCATGY | 2 cut(s) | 104, 653 |
| XmiI | GTMKAC | 1 cut(s) | 111 |
| XmnI | GAANNNNTTC | 1 cut(s) | 267 |
| XspI | CTAG | 1 cut(s) | 425 |