FvH4_3g13181

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000125
Physical Location & Seq
Forward (+)
7870084 .. 7870833
750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13181.t1

Sequence Viewer

Length: 651 bp
ATGGTCCGAATTGTGAAGTACGCGTTATTTGGTATGTGCATATTTGTTGTATTGGGCACCAACTCTTGGAGAGAAATACCATCGGTTCCTCCTCCTCACAGGGTAACAAATTGGTTGTACAATCTTTGTGCATACGGCGATATGCATTGGCTGACCTTGAGAGAAGGAGCAGGAGGTGTCCATATAATTTCTTTCGATTTCAAAAAAGAAGAGTTTCACTGCACCCCTACTCCCCCGACAGTGCGAAGCAACAGGGACTCCATCTTGCATTTGCTTACTTTAAGAGGATCCATGGCCATTGTGGAGACTTTTCCATTGGCAGAAGGAGGTATCAAGGTTGAGATATGGGTGACGAAAGATTATGCAAAGAAAGAATGGGCGAGAGAATACAGCATAAACGTCGACAGGCGTCCTGAGTTTGAGTCGATATCTGCGACTTGTGGTGAATGGGAGCATGGCATATTTTTCAATGATCGACACTTCTCTTTTAAGCCTGAGGTTACTAGATTGTTTTTGGATCTTAGAAGTGCTTCCGTCAATACTGCGATATGCCCACTTAAGACCAACTACATCAGGAGCTATACTGGGAGCTTAATTTCCTTGAGAAATTTTGCTACTTTAGGTGACAGTGCTGATGAGCCTAGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

217

Amino Acids

24.65

Weight (kDa)

7.05

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 17 - 132 3.1e-12 F-box associated beta propeller domain
FBA_1 PF07734 19 - 143 2.3e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 66
AccI GTMKAC 1 cut(s) 402
AccII CGCG 1 cut(s) 23
AclWI GGATC 3 cut(s) 282, 295, 525
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 1 cut(s) 607
AcyI GRCGYC 1 cut(s) 409
AfaI GTAC 2 cut(s) 20, 119
AfiI CCNNNNNNNGG 1 cut(s) 66
AflII CTTAAG 1 cut(s) 557
AflIII ACRYGT 1 cut(s) 21
AgsI TTSAA 2 cut(s) 202, 469
AluBI AGCT 2 cut(s) 579, 591
AluI AGCT 2 cut(s) 579, 591
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 3 cut(s) 282, 295, 525
AoxI GGCC 1 cut(s) 294
ApoI RAATTY 1 cut(s) 607
Asp700I GAANNNNTTC 2 cut(s) 213, 529
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 361, 455, 635
AvaII GGWCC 1 cut(s) 4
AxyI CCTNAGG 1 cut(s) 495
BaeGI GKGCMC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 296
BamHI GGATCC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 56
BccI CCATC 2 cut(s) 88, 269
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 2 cut(s) 504, 642
BfrI CTTAAG 1 cut(s) 557
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 58, 87, 289
BmrI ACTGGG 1 cut(s) 594
BmuI ACTGGG 1 cut(s) 594
BoxI GACNNNNGTC 1 cut(s) 408
BpuEI CTTGAG 2 cut(s) 178, 622
BsaHI GRCGYC 1 cut(s) 409
BsaJI CCNNGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 4 cut(s) 214, 242, 244, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 589
Bse21I CCTNAGG 1 cut(s) 495
BseDI CCNNGG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 405, 486
BseNI ACTGG 1 cut(s) 589
BseRI GAGGAG 2 cut(s) 81, 84
BseSI GKGCMC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 205
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 56
BslFI GGGAC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 269
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 59
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 3 cut(s) 287, 472, 517
Bsp19I CCATGG 1 cut(s) 291
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 2 cut(s) 406, 487
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 3 cut(s) 58, 87, 289
BspPI GGATC 3 cut(s) 282, 295, 525
BspT107I GGYRCC 1 cut(s) 56
BspTI CTTAAG 1 cut(s) 557
BsrGI TGTACA 1 cut(s) 117
BsrI ACTGG 1 cut(s) 589
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 3 cut(s) 287, 472, 517
BssNI GRCGYC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 241, 629
Bst6I CTCTTC 1 cut(s) 204
BstACI GRCGYC 1 cut(s) 409
BstAFI CTTAAG 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 117
BstDEI CTNAG 3 cut(s) 414, 495, 521
BstDSI CCRYGG 1 cut(s) 291
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 3 cut(s) 290, 475, 520
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 3 cut(s) 287, 472, 517
BstPAI GACNNNNGTC 1 cut(s) 408
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 1 cut(s) 23
BstX2I RGATCY 2 cut(s) 287, 517
BstYI RGATCY 2 cut(s) 287, 517
Bsu36I CCTNAGG 1 cut(s) 495
BsuRI GGCC 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 3 cut(s) 217, 246, 634
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 398
Csp6I GTAC 2 cut(s) 19, 118
CviAII CATG 2 cut(s) 292, 455
CviJI RGCY 6 cut(s) 151, 296, 493, 579, 591, 640
CviKI_1 RGCY 6 cut(s) 151, 296, 493, 579, 591, 640
CviQI GTAC 2 cut(s) 19, 118
DdeI CTNAG 3 cut(s) 414, 495, 521
DpnI GATC 3 cut(s) 289, 474, 519
DpnII GATC 3 cut(s) 287, 472, 517
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 1 cut(s) 291
Eco32I GATATC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 4
Eco81I CCTNAGG 1 cut(s) 495
EcoRV GATATC 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 291
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 2 cut(s) 295, 458
FaqI GGGAC 1 cut(s) 269
FatI CATG 2 cut(s) 291, 454
FblI GTMKAC 1 cut(s) 402
FspBI CTAG 2 cut(s) 504, 642
HaeIII GGCC 1 cut(s) 296
HgaI GACGC 1 cut(s) 398
Hin1I GRCGYC 1 cut(s) 409
Hin1II CATG 2 cut(s) 295, 458
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 2 cut(s) 257, 422
HphI GGTGA 3 cut(s) 361, 455, 635
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 1 cut(s) 8
Hpy188III TCNNGA 3 cut(s) 413, 574, 648
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 2 cut(s) 158, 317
HpyCH4III ACNGT 2 cut(s) 241, 629
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 6 cut(s) 39, 131, 145, 222, 268, 365
HpyF3I CTNAG 3 cut(s) 414, 495, 521
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 1 cut(s) 409
Hsp92II CATG 2 cut(s) 295, 458
Kzo9I GATC 3 cut(s) 287, 472, 517
LmnI GCTCC 4 cut(s) 167, 451, 576, 588
LpnPI CCDG 8 cut(s) 85, 156, 238, 391, 426, 507, 559, 570
MaeI CTAG 2 cut(s) 504, 642
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 4 cut(s) 103, 349, 499, 623
MalI GATC 3 cut(s) 289, 474, 519
MboI GATC 3 cut(s) 287, 472, 517
MboII GAAGA 1 cut(s) 221
MflI RGATCY 2 cut(s) 287, 517
MhlI GDGCHC 1 cut(s) 59
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 5 cut(s) 9, 109, 186, 594, 607
MluI ACGCGT 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 2 cut(s) 251, 431
MnlI CCTC 7 cut(s) 99, 102, 105, 167, 278, 320, 490
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 147
MroXI GAANNNNTTC 2 cut(s) 213, 529
MscI TGGCCA 1 cut(s) 296
MseI TTAA 4 cut(s) 281, 489, 558, 593
Msp20I TGGCCA 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 557
MvnI CGCG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 291
NdeII GATC 3 cut(s) 287, 472, 517
NlaIII CATG 2 cut(s) 295, 458
NlaIV GGNNCC 3 cut(s) 58, 87, 289
NmuCI GTSAC 2 cut(s) 349, 623
NsiI ATGCAT 1 cut(s) 147
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PdmI GAANNNNTTC 2 cut(s) 213, 529
PflMI CCANNNNNTGG 1 cut(s) 66
PleI GAGTC 2 cut(s) 251, 430
PpsI GAGTC 2 cut(s) 251, 430
PshAI GACNNNNGTC 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 58, 87, 289
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 287, 517
RsaI GTAC 2 cut(s) 20, 119
RsaNI GTAC 2 cut(s) 19, 118
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 4 cut(s) 281, 489, 558, 593
Sau3AI GATC 3 cut(s) 287, 472, 517
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 251, 431
SduI GDGCHC 1 cut(s) 59
SetI ASST 9 cut(s) 158, 178, 331, 339, 402, 501, 581, 593, 625
SinI GGWCC 1 cut(s) 4
SmlI CTYRAG 3 cut(s) 157, 557, 601
SmoI CTYRAG 3 cut(s) 157, 557, 601
Sse9I AATT 5 cut(s) 9, 109, 186, 594, 607
SspMI CTAG 2 cut(s) 504, 642
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 2 cut(s) 241, 629
TaiI ACGT 1 cut(s) 402
TaqI TCGA 4 cut(s) 195, 402, 425, 475
TasI AATT 5 cut(s) 9, 109, 186, 594, 607
TatI WGTACW 1 cut(s) 117
Tru1I TTAA 4 cut(s) 281, 489, 558, 593
Tru9I TTAA 4 cut(s) 281, 489, 558, 593
TscAI CASTG 3 cut(s) 224, 246, 634
TseFI GTSAC 2 cut(s) 349, 623
Tsp45I GTSAC 2 cut(s) 349, 623
TspGWI ACGGA 1 cut(s) 523
TspRI CASTG 3 cut(s) 224, 246, 634
Van91I CCANNNNNTGG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 402
XmnI GAANNNNTTC 2 cut(s) 213, 529
XspI CTAG 2 cut(s) 504, 642
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.