Rw3G021000

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000125
Physical Location & Seq
Reverse (-)
25107297 .. 25111139
3843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021000.1

Sequence Viewer

Length: 819 bp
ATGCTCCCAATGAGTAAGGTCCAAGTTCCACCCTCTTGTAGAAATAAGATATTCATAGATTGGTACGGCATGGGTTTTGATGATATAACTAGCACCTACAAGATTGTTCGTGTTTCTGGAAAGGCACAATGCTGTTTGGTGGCCCAAGTTTATGCATTAGGCACCAGCTCATGGAAATGGATAAGCTCAGTTCCTCCATGTAATTTAAGCACAGAAAATATATCTACATATGGAGACCTGCATTGGTTAATTAATCGCTCAAGTACTGGAGGACAAATCTGCATAGTTTCTTTTGACTTCAAGAAGGAGGAGTTCTATTTGATGCCTCATCCCACATTAAGAAAGCAAGAATATTCTTTCTTGTCCCTTCGCTTTGTTAATTTGAGAGGATCTATGGCAATTGTTGATACTTCATCACATACACATATTGACATGTGGGTTTTGAAGAGTTATGAGAAGAAAGAGTGGGTGCAAGATTACAGCGTGAATCTCGAACTGCCTGATCATGGCATATTTTTAGTAGAATTTTATGTTGCTACTAACGCATTCTTTGTGGATACAAGATGTGATTATGAGAAACGTGTATCACTTGGAGGTTCAGAGTATACGAGGATCTTCAGCTATCCTGGGAGTTTGATTTCATTAAAAGATTATGGCAATTTGATTGGAGCAGAAGCAGGTAGCTGGAGGCCTGATTTCTCTGAAAAGTCTTGGAAATTGATTGAACCAAAATCAAGTGGGAGGAATATCTTTCACATGAGGGCTAATGTCAGATGGGTTGCTCCAGCTTCTTGCAGGGCCTTATTGTGTGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

272

Amino Acids

31.19

Weight (kDa)

8.54

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 18 - 187 1.5e-18 F-box associated beta propeller domain
FBA_3 PF08268 22 - 160 9.6e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 246, 668
AccB1I GGYRCC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 171
AccI GTMKAC 1 cut(s) 605
AclWI GGATC 2 cut(s) 397, 620
AcsI RAATTY 1 cut(s) 524
AcuI CTGAAG 1 cut(s) 601
AfaI GTAC 2 cut(s) 65, 265
AfiI CCNNNNNNNGG 2 cut(s) 171, 506
AflIII ACRYGT 2 cut(s) 432, 580
AgsI TTSAA 3 cut(s) 301, 445, 725
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 5 cut(s) 168, 186, 621, 684, 788
AluI AGCT 5 cut(s) 168, 186, 621, 684, 788
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 2 cut(s) 397, 620
AoxI GGCC 3 cut(s) 141, 689, 798
ApoI RAATTY 1 cut(s) 524
AseI ATTAAT 1 cut(s) 252
AspS9I GGNCC 3 cut(s) 19, 142, 798
AvaII GGWCC 1 cut(s) 19
BanI GGYRCC 1 cut(s) 161
BccI CCATC 1 cut(s) 768
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 627
BciVI GTATCC 1 cut(s) 550
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 90
BfuAI ACCTGC 2 cut(s) 246, 668
BfuI GTATCC 1 cut(s) 550
BmcAI AGTACT 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 627
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 3 cut(s) 19, 142, 798
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 1 cut(s) 627
BmsI GCATC 1 cut(s) 312
BpmI CTGGAG 3 cut(s) 288, 706, 768
BpuEI CTTGAG 1 cut(s) 244
BsaI GGTCTC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 626
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 506
Bse1I ACTGG 1 cut(s) 271
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 1 cut(s) 626
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 2 cut(s) 171, 506
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 271
BseRI GAGGAG 1 cut(s) 323
BshFI GGCC 3 cut(s) 143, 691, 800
BshNI GGYRCC 1 cut(s) 161
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 171, 506
BsmAI GTCTC 1 cut(s) 228
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 3 cut(s) 143, 691, 800
Bso31I GGTCTC 1 cut(s) 228
Bsp143I GATC 3 cut(s) 389, 502, 612
BspANI GGCC 3 cut(s) 143, 691, 800
BspCNI CTCAG 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 163
BspMI ACCTGC 2 cut(s) 246, 668
BspPI GGATC 2 cut(s) 397, 620
BspT107I GGYRCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 228
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 626
BssMI GATC 3 cut(s) 389, 502, 612
BssNAI GTATAC 1 cut(s) 606
Bst1107I GTATAC 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 627
Bst6I CTCTTC 1 cut(s) 440
BstDEI CTNAG 1 cut(s) 187
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 3 cut(s) 392, 505, 615
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 3 cut(s) 389, 502, 612
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 1 cut(s) 625
BstX2I RGATCY 2 cut(s) 389, 612
BstYI RGATCY 2 cut(s) 389, 612
BstZ17I GTATAC 1 cut(s) 606
BsuI GTATCC 1 cut(s) 550
BsuRI GGCC 3 cut(s) 143, 691, 800
BtsCI GGATG 1 cut(s) 328
BveI ACCTGC 2 cut(s) 246, 668
Cfr13I GGNCC 3 cut(s) 19, 142, 798
Csp6I GTAC 2 cut(s) 64, 264
CviAII CATG 6 cut(s) 70, 171, 198, 433, 506, 757
CviJI RGCY 9 cut(s) 143, 168, 186, 621, 684, 691, 764, 788, 800
CviKI_1 RGCY 9 cut(s) 143, 168, 186, 621, 684, 691, 764, 788, 800
CviQI GTAC 2 cut(s) 64, 264
DdeI CTNAG 1 cut(s) 187
DpnI GATC 3 cut(s) 391, 504, 614
DpnII GATC 3 cut(s) 389, 502, 612
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco147I AGGCCT 1 cut(s) 691
Eco31I GGTCTC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 798
EcoRII CCWGG 1 cut(s) 625
EcoT22I ATGCAT 1 cut(s) 157
FaeI CATG 6 cut(s) 73, 174, 201, 436, 509, 760
FaqI GGGAC 1 cut(s) 349
FatI CATG 6 cut(s) 69, 170, 197, 432, 505, 756
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 605
FokI GGATG 1 cut(s) 315
FspBI CTAG 1 cut(s) 90
GsuI CTGGAG 3 cut(s) 288, 706, 768
HaeIII GGCC 3 cut(s) 143, 691, 800
Hin1II CATG 6 cut(s) 73, 174, 201, 436, 509, 760
HinfI GANTC 1 cut(s) 487
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 3 cut(s) 601, 703, 773
Hpy188III TCNNGA 3 cut(s) 117, 301, 491
Hpy8I GTNNAC 1 cut(s) 606
HpyAV CCTTC 2 cut(s) 298, 377
HpyCH4IV ACGT 1 cut(s) 580
HpyCH4V TGCA 5 cut(s) 155, 241, 282, 472, 795
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 580
Hsp92II CATG 6 cut(s) 73, 174, 201, 436, 509, 760
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 3 cut(s) 389, 502, 612
LmnI GCTCC 3 cut(s) 9, 668, 787
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 580
MalI GATC 3 cut(s) 391, 504, 614
MboI GATC 3 cut(s) 389, 502, 612
MboII GAAGA 3 cut(s) 457, 469, 607
MfeI CAATTG 1 cut(s) 399
MflI RGATCY 2 cut(s) 389, 612
MluCI AATT 7 cut(s) 202, 249, 379, 399, 524, 658, 716
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 6 cut(s) 206, 248, 252, 338, 378, 644
MslI CAYNNNNRTG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 627
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 1 cut(s) 542
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 389, 502, 612
NlaIII CATG 6 cut(s) 73, 174, 201, 436, 509, 760
NlaIV GGNNCC 1 cut(s) 163
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 1 cut(s) 436
PacI TTAATTAA 1 cut(s) 252
PceI AGGCCT 1 cut(s) 691
PciI ACATGT 1 cut(s) 432
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 1 cut(s) 487
PflMI CCANNNNNTGG 1 cut(s) 171
PscI ACATGT 1 cut(s) 432
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 3 cut(s) 19, 142, 798
PsuI RGATCY 2 cut(s) 389, 612
RsaI GTAC 2 cut(s) 65, 265
RsaNI GTAC 2 cut(s) 64, 264
RseI CAYNNNNRTG 1 cut(s) 175
SaqAI TTAA 6 cut(s) 206, 248, 252, 338, 378, 644
Sau3AI GATC 3 cut(s) 389, 502, 612
Sau96I GGNCC 3 cut(s) 19, 142, 798
ScaI AGTACT 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 627
SfaNI GCATC 1 cut(s) 312
SinI GGWCC 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 7 cut(s) 202, 249, 379, 399, 524, 658, 716
SseBI AGGCCT 1 cut(s) 691
SspI AATATT 1 cut(s) 353
SspMI CTAG 1 cut(s) 90
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 625
TaiI ACGT 1 cut(s) 583
TaqI TCGA 1 cut(s) 492
TasI AATT 7 cut(s) 202, 249, 379, 399, 524, 658, 716
TatI WGTACW 1 cut(s) 263
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 6 cut(s) 206, 248, 252, 338, 378, 644
Tru9I TTAA 6 cut(s) 206, 248, 252, 338, 378, 644
TspDTI ATGAA 3 cut(s) 43, 402, 630
Van91I CCANNNNNTGG 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 19
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 1 cut(s) 524
XceI RCATGY 1 cut(s) 436
XmiI GTMKAC 1 cut(s) 605
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.