pycom09g19490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000125
Physical Location & Seq
Reverse (-)
20326195 .. 20327325
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g19490.3

Sequence Viewer

Length: 936 bp
ATGGTTGACAATCCTGCTTTTGTTACAATGTACACGCAGCGTTTACTTACTGCTACCAACAATGCTGCTGAAGTACCTCAACTTATGCTTCTTGTTAAATCCTCACTCACTGGATGCTTTTACAACTTCAAAAACCATGGAATTGCATCTGAGATCTTAACCAGCCATAACAATAGGTACGATGTACATTTTGTTTTCTGCAACTTGGTCTGCTTTAAAGACATCAAGTATGGAGGTCGATGCTTCTTATTCAATCCACTTAAGGGAGAAGTTCTTATGCTCCCAACCAGTAATGTCCAAGTGCCAGCCGCACCATCTTATCGCAGAGGTCGTGCGTTCTTCGATTGGTATGCTATGGGATTTGATAATATAACAAACACCTACAAGGTTCTTCGTGTCTGTGGGAATCCATTTCCCAAAAACCTGGTGGCTCAAATTCTTGTATTGGGAACAAGCACTTGGCGAGAGATAAGCTCAGTTCCTCCTTCTGAAGGATTAAGTCACAAGAACGTATCTTCATATGGGGATATGCATTGGGTGATCAGTTGGGGACGAGAATTACAGCAATGGGAGAAACTAGATGCCTGGCCATTGGATGCTTGGTCAGATATGCATATTGACATTTGGGTGTTGAAAATTTTCAATAATGAAGAGTGGGTGAAACAATACTGCAAAAATACCGAACTTGCAAGATATCTAAGATGTTGTGAGTGTCCAATGGACAGGTGTGGTGAATGGGAACATGGTATATTTTTCAAAGAATTGATCTCCTGCAGGAAAGGCAGTACTGTTTCTACAAAGCTCGTGGAGTGTCCAATGTTAGTGCAGAATTGGACCATCATCAGTTATACTGGGAGCCTGATTTCCTTAAATAATTATGGCAATTTGAAGCGGAAGCAGCTTGGTGTTAGTGCAAGACTATGGCAAATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

312

Amino Acids

35.84

Weight (kDa)

8.54

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 309, 892
AcoI YGGCCR 1 cut(s) 587
AcsI RAATTY 2 cut(s) 435, 636
AcuI CTGAAG 2 cut(s) 90, 510
AfaI GTAC 5 cut(s) 32, 75, 179, 186, 787
AfiI CCNNNNNNNGG 2 cut(s) 263, 491
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 6 cut(s) 130, 253, 634, 643, 757, 889
AjnI CCWGG 2 cut(s) 423, 584
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AluBI AGCT 3 cut(s) 474, 802, 901
AluI AGCT 3 cut(s) 474, 802, 901
AoxI GGCC 1 cut(s) 587
ApeKI GCWGC 3 cut(s) 37, 65, 898
ApoI RAATTY 2 cut(s) 435, 636
Asp700I GAANNNNTTC 1 cut(s) 638
AspS9I GGNCC 1 cut(s) 834
AsuHPI GGTGA 3 cut(s) 550, 670, 743
AvaII GGWCC 1 cut(s) 834
BalI TGGCCA 1 cut(s) 589
BauI CACGAG 1 cut(s) 803
BbvI GCAGC 3 cut(s) 49, 52, 910
BccI CCATC 2 cut(s) 322, 845
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 2 cut(s) 425, 586
BclI TGATCA 1 cut(s) 540
BfaI CTAG 1 cut(s) 578
BfmI CTRYAG 1 cut(s) 772
BfrI CTTAAG 1 cut(s) 260
BglII AGATCT 1 cut(s) 153
BisI GCNGC 4 cut(s) 38, 66, 309, 899
BlsI GCNGC 4 cut(s) 39, 67, 310, 900
BmcAI AGTACT 1 cut(s) 787
Bme1390I CCNGG 2 cut(s) 425, 586
Bme18I GGWCC 1 cut(s) 834
BmgT120I GGNCC 1 cut(s) 834
BmiI GGNNCC 1 cut(s) 857
BmrFI CCNGG 2 cut(s) 425, 586
BmrI ACTGGG 1 cut(s) 861
BmsI GCATC 5 cut(s) 104, 155, 230, 571, 586
BmuI ACTGGG 1 cut(s) 861
BplI GAGNNNNNCTC 2 cut(s) 458, 490
BsaJI CCNNGG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 491
Bse1I ACTGG 3 cut(s) 115, 288, 856
Bse3DI GCAATG 1 cut(s) 572
BseBI CCWGG 2 cut(s) 425, 586
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 2 cut(s) 119, 601
BseLI CCNNNNNNNGG 2 cut(s) 263, 491
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 141, 489
BseNI ACTGG 3 cut(s) 115, 288, 856
BseXI GCAGC 3 cut(s) 49, 52, 910
BsgI GTGCAG 1 cut(s) 845
BshFI GGCC 1 cut(s) 589
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 2 cut(s) 263, 491
BsmFI GGGAC 1 cut(s) 564
BsnI GGCC 1 cut(s) 589
Bsp1407I TGTACA 2 cut(s) 30, 184
Bsp143I GATC 3 cut(s) 153, 540, 765
Bsp19I CCATGG 1 cut(s) 136
BspACI CCGC 2 cut(s) 309, 892
BspANI GGCC 1 cut(s) 589
BspCNI CTCAG 2 cut(s) 142, 488
BspLI GGNNCC 1 cut(s) 857
BspMAI CTGCAG 1 cut(s) 776
BspTI CTTAAG 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 572
BsrGI TGTACA 2 cut(s) 30, 184
BsrI ACTGG 3 cut(s) 115, 288, 856
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 3 cut(s) 153, 540, 765
BssSI CACGAG 1 cut(s) 803
BssT1I CCWWGG 1 cut(s) 136
Bst2BI CACGAG 1 cut(s) 803
Bst2UI CCWGG 2 cut(s) 425, 586
Bst4CI ACNGT 1 cut(s) 790
Bst6I CTCTTC 1 cut(s) 645
BstAFI CTTAAG 1 cut(s) 260
BstAUI TGTACA 2 cut(s) 30, 184
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 3 cut(s) 150, 475, 698
BstDSI CCRYGG 1 cut(s) 136
BstENI CCTNNNNNAGG 1 cut(s) 489
BstF5I GGATG 2 cut(s) 119, 601
BstKTI GATC 3 cut(s) 156, 543, 768
BstMBI GATC 3 cut(s) 153, 540, 765
BstMWI GCNNNNNNNGC 2 cut(s) 780, 898
BstNI CCWGG 2 cut(s) 425, 586
BstSCI CCNGG 2 cut(s) 423, 584
BstSFI CTRYAG 1 cut(s) 772
BstV1I GCAGC 3 cut(s) 49, 52, 910
BstX2I RGATCY 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 424
BstYI RGATCY 1 cut(s) 153
BsuRI GGCC 1 cut(s) 589
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 2 cut(s) 119, 601
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 834
CsiI ACCWGGT 1 cut(s) 423
Csp6I GTAC 5 cut(s) 31, 74, 178, 185, 786
CspCI CAANNNNNGTGG 2 cut(s) 786, 821
CviAII CATG 2 cut(s) 137, 743
CviJI RGCY 8 cut(s) 165, 308, 431, 474, 589, 802, 858, 901
CviKI_1 RGCY 8 cut(s) 165, 308, 431, 474, 589, 802, 858, 901
CviQI GTAC 5 cut(s) 31, 74, 178, 185, 786
DdeI CTNAG 3 cut(s) 150, 475, 698
DpnI GATC 3 cut(s) 155, 542, 767
DpnII GATC 3 cut(s) 153, 540, 765
DraI TTTAAA 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco130I CCWWGG 1 cut(s) 136
Eco32I GATATC 1 cut(s) 695
Eco47I GGWCC 1 cut(s) 834
Eco57I CTGAAG 2 cut(s) 90, 510
EcoNI CCTNNNNNAGG 1 cut(s) 489
EcoRII CCWGG 2 cut(s) 423, 584
EcoRV GATATC 1 cut(s) 695
EcoT14I CCWWGG 1 cut(s) 136
EcoT22I ATGCAT 2 cut(s) 534, 615
ErhI CCWWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 140, 746
FaqI GGGAC 1 cut(s) 564
FatI CATG 2 cut(s) 136, 742
FauNDI CATATG 1 cut(s) 520
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 4 cut(s) 38, 66, 309, 899
FokI GGATG 2 cut(s) 126, 608
Fsp4HI GCNGC 4 cut(s) 38, 66, 309, 899
FspBI CTAG 1 cut(s) 578
GluI GCNGC 4 cut(s) 38, 66, 309, 899
HaeIII GGCC 1 cut(s) 589
Hin1II CATG 2 cut(s) 140, 746
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 1 cut(s) 406
HphI GGTGA 3 cut(s) 550, 670, 743
Hpy166II GTNNAC 3 cut(s) 7, 33, 44
Hpy188I TCNGA 3 cut(s) 151, 490, 607
Hpy8I GTNNAC 3 cut(s) 7, 33, 44
HpyAV CCTTC 2 cut(s) 485, 495
HpyCH4III ACNGT 1 cut(s) 790
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 9 cut(s) 146, 201, 532, 613, 672, 689, 774, 826, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 780, 898
HpyF3I CTNAG 3 cut(s) 150, 475, 698
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 2 cut(s) 140, 746
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 3 cut(s) 153, 540, 765
LmnI GCTCC 2 cut(s) 285, 855
Lsp1109I GCAGC 3 cut(s) 49, 52, 910
LweI GCATC 5 cut(s) 104, 155, 230, 571, 586
MabI ACCWGGT 1 cut(s) 423
MaeI CTAG 1 cut(s) 578
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 2 cut(s) 22, 500
MalI GATC 3 cut(s) 155, 542, 767
MboI GATC 3 cut(s) 153, 540, 765
MboII GAAGA 4 cut(s) 331, 383, 507, 662
MflI RGATCY 1 cut(s) 153
MlsI TGGCCA 1 cut(s) 589
MluCI AATT 9 cut(s) 141, 435, 557, 636, 761, 829, 874, 883, 927
MluNI TGGCCA 1 cut(s) 589
MnlI CCTC 5 cut(s) 87, 112, 227, 320, 492
Mox20I TGGCCA 1 cut(s) 589
Mph1103I ATGCAT 2 cut(s) 534, 615
MroXI GAANNNNTTC 1 cut(s) 638
MscI TGGCCA 1 cut(s) 589
MseI TTAA 6 cut(s) 96, 158, 216, 261, 497, 869
MslI CAYNNNNRTG 1 cut(s) 626
Msp20I TGGCCA 1 cut(s) 589
MspCI CTTAAG 1 cut(s) 260
MspR9I CCNGG 2 cut(s) 425, 586
MvaI CCWGG 2 cut(s) 425, 586
MwoI GCNNNNNNNGC 2 cut(s) 780, 898
NcoI CCATGG 1 cut(s) 136
NdeI CATATG 1 cut(s) 520
NdeII GATC 3 cut(s) 153, 540, 765
NlaIII CATG 2 cut(s) 140, 746
NlaIV GGNNCC 1 cut(s) 857
NmuCI GTSAC 1 cut(s) 500
NsiI ATGCAT 2 cut(s) 534, 615
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 1 cut(s) 406
PkrI GCNGC 4 cut(s) 39, 67, 310, 900
Psp6I CCWGG 2 cut(s) 423, 584
PspGI CCWGG 2 cut(s) 423, 584
PspN4I GGNNCC 1 cut(s) 857
PspPI GGNCC 1 cut(s) 834
PstI CTGCAG 1 cut(s) 776
PsuI RGATCY 1 cut(s) 153
RsaI GTAC 5 cut(s) 32, 75, 179, 186, 787
RsaNI GTAC 5 cut(s) 31, 74, 178, 185, 786
RseI CAYNNNNRTG 1 cut(s) 626
SaqAI TTAA 6 cut(s) 96, 158, 216, 261, 497, 869
SatI GCNGC 4 cut(s) 38, 66, 309, 899
Sau3AI GATC 3 cut(s) 153, 540, 765
Sau96I GGNCC 1 cut(s) 834
SbfI CCTGCAGG 1 cut(s) 776
ScaI AGTACT 1 cut(s) 787
ScrFI CCNGG 2 cut(s) 425, 586
SdaI CCTGCAGG 1 cut(s) 776
SexAI ACCWGGT 1 cut(s) 423
SfaNI GCATC 5 cut(s) 104, 155, 230, 571, 586
SfcI CTRYAG 1 cut(s) 772
SinI GGWCC 1 cut(s) 834
SmiMI CAYNNNNRTG 1 cut(s) 626
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse8387I CCTGCAGG 1 cut(s) 776
Sse9I AATT 9 cut(s) 141, 435, 557, 636, 761, 829, 874, 883, 927
SsiI CCGC 2 cut(s) 309, 892
SspMI CTAG 1 cut(s) 578
StyD4I CCNGG 2 cut(s) 423, 584
StyI CCWWGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 790
TaiI ACGT 1 cut(s) 513
TaqI TCGA 2 cut(s) 238, 342
TasI AATT 9 cut(s) 141, 435, 557, 636, 761, 829, 874, 883, 927
TatI WGTACW 3 cut(s) 30, 184, 785
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 6 cut(s) 96, 158, 216, 261, 497, 869
Tru9I TTAA 6 cut(s) 96, 158, 216, 261, 497, 869
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 3 cut(s) 37, 65, 898
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 2 cut(s) 507, 663
TspRI CASTG 1 cut(s) 115
Vha464I CTTAAG 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 834
XagI CCTNNNNNAGG 1 cut(s) 489
XapI RAATTY 2 cut(s) 435, 636
XcmI CCANNNNNNNNNTGG 2 cut(s) 424, 597
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 1 cut(s) 578
ZrmI AGTACT 1 cut(s) 787
Zsp2I ATGCAT 2 cut(s) 534, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.