FvH4_3g19662

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000125
Physical Location & Seq
Reverse (-)
12838881 .. 12839411
531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19662.t1

Sequence Viewer

Length: 531 bp
ATGTGGAGAAAGAGATTGTTGATAAAGAGTATAGTCAATTTGTGGAGAAAGAGATTGCCGAAGAGAAACATGGTTGACTATGGTGATCCAAGCACAAAGGTAACAACAATAATGGACCTACCGGAAGATGTCATGGTTGACATCCTCTTGAGGCTATCGGTAAAATCACTCTGCCACATCCAGTGCATGTCTAAGACCTCTTTTGACATAGCTCGCAGCCCCGGCTTTGCTGCACTGCACACCCGTAACTTCGAATTCCCTCGGCTTATTCTAGTCACTGAATCGCGCAACCAAAATGGGACGACCTCAATTGCATTGCAGTCATTAGAATATAATTGCGAAAAGTACACATTGACAAAAACCAAACAGTTTGCTCTTGTCTCAAAGATTTGCTTTAGGAAGAATTCGTTCCCCCAAGTAGACTTTGTTTACTGTAACTTACTTTTCTTCACAAGAAATTGTGGAGTTCCATGGCTCTTAATGAATCCACTAAGGGGAGAAGCCTTAAAGCTACTAGTTGTTAGTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

177

Amino Acids

20.4

Weight (kDa)

9.74

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 37 - 76 4e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 420
AccII CGCG 1 cut(s) 286
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 254, 403
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 494
AhlI ACTAGT 1 cut(s) 514
AluBI AGCT 2 cut(s) 212, 511
AluI AGCT 2 cut(s) 212, 511
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 216, 230
ApoI RAATTY 2 cut(s) 254, 403
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 252
AvaII GGWCC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 217, 228
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 385
BcuI ACTAGT 1 cut(s) 514
BfaI CTAG 2 cut(s) 272, 515
BisI GCNGC 2 cut(s) 217, 231
BlsI GCNGC 2 cut(s) 218, 232
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 220, 260, 470
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 314
BseDI CCNNGG 3 cut(s) 220, 260, 470
BseGI GGATG 2 cut(s) 141, 177
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMI GCAATG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 217, 228
BsgI GTGCAG 2 cut(s) 216, 221
Bsh1236I CGCG 1 cut(s) 286
BsiSI CCGG 2 cut(s) 122, 222
BslFI GGGAC 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 313
Bsp119I TTCGAA 1 cut(s) 252
Bsp143I GATC 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 470
BspFNI CGCG 1 cut(s) 286
BspPI GGATC 1 cut(s) 80
BspT104I TTCGAA 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 314
BsrI ACTGG 1 cut(s) 181
BssECI CCNNGG 3 cut(s) 220, 260, 470
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 470
Bst4CI ACNGT 2 cut(s) 369, 434
Bst6I CTCTTC 1 cut(s) 56
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 192, 491
BstDSI CCRYGG 1 cut(s) 470
BstF5I GGATG 2 cut(s) 141, 177
BstFNI CGCG 1 cut(s) 286
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 217, 228
BtgI CCRYGG 1 cut(s) 470
BtsCI GGATG 2 cut(s) 141, 177
BtsI GCAGTG 1 cut(s) 233
BtsIMutI CAGTG 3 cut(s) 188, 233, 276
Cac8I GCNNGC 1 cut(s) 214
CfoI GCGC 1 cut(s) 288
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 346
CviAII CATG 4 cut(s) 70, 133, 187, 471
CviJI RGCY 8 cut(s) 154, 212, 219, 225, 265, 475, 503, 511
CviKI_1 RGCY 8 cut(s) 154, 212, 219, 225, 265, 475, 503, 511
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 2 cut(s) 192, 491
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco130I CCWWGG 1 cut(s) 470
Eco47I GGWCC 1 cut(s) 115
EcoRI GAATTC 2 cut(s) 254, 403
EcoT14I CCWWGG 1 cut(s) 470
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 4 cut(s) 73, 136, 190, 474
FaiI YATR 8 cut(s) 32, 71, 81, 134, 188, 209, 333, 472
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 313
FatI CATG 4 cut(s) 69, 132, 186, 470
FblI GTMKAC 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 217, 231
FokI GGATG 2 cut(s) 128, 164
Fsp4HI GCNGC 2 cut(s) 217, 231
FspBI CTAG 2 cut(s) 272, 515
GlaI GCGC 1 cut(s) 287
GluI GCNGC 2 cut(s) 217, 231
HapII CCGG 2 cut(s) 122, 222
HhaI GCGC 1 cut(s) 288
Hin1II CATG 4 cut(s) 73, 136, 190, 474
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HincII GTYRAC 2 cut(s) 76, 139
HindII GTYRAC 2 cut(s) 76, 139
HinfI GANTC 2 cut(s) 281, 484
HpaII CCGG 2 cut(s) 122, 222
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 5 cut(s) 76, 139, 348, 421, 430
Hpy188III TCNNGA 1 cut(s) 148
Hpy8I GTNNAC 5 cut(s) 76, 139, 348, 421, 430
HpyCH4III ACNGT 2 cut(s) 369, 434
HpyCH4V TGCA 5 cut(s) 186, 233, 238, 314, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 192, 491
Hsp92II CATG 4 cut(s) 73, 136, 190, 474
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 3 cut(s) 135, 194, 235
Lsp1109I GCAGC 2 cut(s) 217, 228
MaeI CTAG 2 cut(s) 272, 515
MaeIII GTNAC 4 cut(s) 100, 245, 274, 434
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 4 cut(s) 73, 137, 412, 439
MfeI CAATTG 1 cut(s) 309
MluCI AATT 6 cut(s) 37, 254, 309, 334, 403, 457
MnlI CCTC 5 cut(s) 144, 155, 208, 270, 316
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 2 cut(s) 479, 506
MspI CCGG 2 cut(s) 122, 222
MspR9I CCNGG 1 cut(s) 222
MunI CAATTG 1 cut(s) 309
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 222
NciI CCSGG 1 cut(s) 222
NcoI CCATGG 1 cut(s) 470
NdeII GATC 1 cut(s) 85
NlaIII CATG 4 cut(s) 73, 136, 190, 474
NmeAIII GCCGAG 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 1 cut(s) 190
NspV TTCGAA 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 281, 484
PkrI GCNGC 2 cut(s) 218, 232
PspPI GGNCC 1 cut(s) 115
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
SaqAI TTAA 2 cut(s) 479, 506
SatI GCNGC 2 cut(s) 217, 231
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 222
SetI ASST 6 cut(s) 102, 120, 200, 214, 308, 513
SfuI TTCGAA 1 cut(s) 252
SinI GGWCC 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SpeI ACTAGT 1 cut(s) 514
Sse9I AATT 6 cut(s) 37, 254, 309, 334, 403, 457
SspMI CTAG 2 cut(s) 272, 515
StyD4I CCNGG 1 cut(s) 220
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 2 cut(s) 369, 434
TaqI TCGA 1 cut(s) 252
TasI AATT 6 cut(s) 37, 254, 309, 334, 403, 457
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 2 cut(s) 281, 484
Tru1I TTAA 2 cut(s) 479, 506
Tru9I TTAA 2 cut(s) 479, 506
TscAI CASTG 3 cut(s) 188, 240, 283
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 2 cut(s) 216, 230
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 1 cut(s) 497
TspRI CASTG 3 cut(s) 188, 240, 283
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 2 cut(s) 254, 403
XceI RCATGY 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 420
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 2 cut(s) 272, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.