RLG00000023500

F-box kelch-repeat protein At3g06240-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
24666987 .. 24668431
1445 bp
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UTR
Exon/CDS
Intron
RLM00000023500

Sequence Viewer

Length: 501 bp
ATGCTGAGAACGAAACGAATGAGCCGGTGCAGCAACGATGCAAAGTTGATGGACCTACCGATTGATATCCTCATCAACATCCTTTTGAGACTGTCGGCAAAATCACTTTGCTGCACACAGTGCGTCCGTAAAACCCTGCTTCACATAGTTGAAGCTCGTTCTTTTGCAACACTAGTGCATCTGCGCTTGCTTACTACAGCTTCCGATGCAGTCACTGAAGTGCCTCAACTTTTGCGTCTTAGTCTTATTGAATTCAATGAGAACGGAAGCTTAATAACAATCTCTCCATCACGGAGATATGATGGCAATGTCTTGACAAGAAGCAGACATCGGGGTGCACAATGCTGCGTTCTACCAGAGATTCCATTGATGGGAGATGAGAGATTTCAAGAAGCGTTTAATCATATCTCCATTGAAAGAAGGTCCCTTATAGAAATATTTAATGAAACAATTCACGGTAACCAGCTATTTCCTGAAATTGAGAAACCAAAAGGTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

167

Amino Acids

18.85

Weight (kDa)

8.86

Isoelectric Point (pI)

72.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 494
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 1 cut(s) 237
AdeI CACNNNGTG 1 cut(s) 120
AfiI CCNNNNNNNGG 2 cut(s) 371, 494
AgsI TTSAA 5 cut(s) 152, 251, 256, 389, 416
AhlI ACTAGT 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 4 cut(s) 155, 200, 270, 466
AluI AGCT 4 cut(s) 155, 200, 270, 466
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 82
Alw44I GTGCAC 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 215
ApaLI GTGCAC 1 cut(s) 336
ApeKI GCWGC 3 cut(s) 30, 111, 345
ApoI RAATTY 1 cut(s) 251
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 1 cut(s) 186
AspS9I GGNCC 2 cut(s) 52, 423
AvaII GGWCC 2 cut(s) 52, 423
BaeGI GKGCMC 1 cut(s) 340
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 3 cut(s) 42, 98, 332
BccI CCATC 4 cut(s) 43, 295, 296, 364
BcoDI GTCTC 1 cut(s) 82
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 1 cut(s) 173
BfmI CTRYAG 1 cut(s) 195
BisI GCNGC 3 cut(s) 31, 112, 346
BlsI GCNGC 3 cut(s) 32, 113, 347
Bme18I GGWCC 2 cut(s) 52, 423
BmgT120I GGNCC 2 cut(s) 52, 423
BmiI GGNNCC 1 cut(s) 425
BmsI GCATC 3 cut(s) 28, 187, 196
BsaBI GATNNNNATC 1 cut(s) 65
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 494
Bse118I RCCGGY 1 cut(s) 24
Bse3DI GCAATG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 65
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 371, 494
BseMI GCAATG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 3 cut(s) 42, 98, 332
BsgI GTGCAG 2 cut(s) 49, 97
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 371, 494
BsmAI GTCTC 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
Bst4CI ACNGT 3 cut(s) 93, 120, 458
BstAPI GCANNNNNTGC 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 5, 239
BstEII GGTNACC 1 cut(s) 458
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 30, 120, 206
BstPI GGTNACC 1 cut(s) 458
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 42, 98, 332
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 125, 213
Cac8I GCNNGC 1 cut(s) 188
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 52, 423
CseI GACGC 2 cut(s) 112, 224
CviJI RGCY 5 cut(s) 24, 155, 200, 270, 466
CviKI_1 RGCY 5 cut(s) 24, 155, 200, 270, 466
DdeI CTNAG 2 cut(s) 5, 239
DraIII CACNNNGTG 1 cut(s) 120
Eco32I GATATC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 52, 423
Eco57I CTGAAG 1 cut(s) 237
Eco91I GGTNACC 1 cut(s) 458
EcoO109I RGGNCCY 1 cut(s) 423
EcoO65I GGTNACC 1 cut(s) 458
EcoRI GAATTC 1 cut(s) 251
EcoRV GATATC 1 cut(s) 67
FaiI YATR 4 cut(s) 146, 300, 405, 431
FaqI GGGAC 1 cut(s) 409
Fnu4HI GCNGC 3 cut(s) 31, 112, 346
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 31, 112, 346
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 185
GluI GCNGC 3 cut(s) 31, 112, 346
HapII CCGG 1 cut(s) 25
HgaI GACGC 2 cut(s) 112, 224
HhaI GCGC 1 cut(s) 186
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 268
HinfI GANTC 1 cut(s) 361
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 3 cut(s) 313, 389, 473
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 3 cut(s) 93, 120, 458
HpyCH4V TGCA 7 cut(s) 30, 41, 114, 167, 178, 209, 338
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 120, 206
HpyF3I CTNAG 2 cut(s) 5, 239
HspAI GCGC 1 cut(s) 184
LpnPI CCDG 5 cut(s) 38, 149, 369, 476, 486
Lsp1109I GCAGC 3 cut(s) 42, 98, 332
LweI GCATC 3 cut(s) 28, 187, 196
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 2 cut(s) 211, 458
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 3 cut(s) 251, 450, 477
MnlI CCTC 2 cut(s) 80, 234
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 3 cut(s) 272, 399, 441
MslI CAYNNNNRTG 2 cut(s) 218, 333
MspI CCGG 1 cut(s) 25
MwoI GCNNNNNNNGC 3 cut(s) 30, 120, 206
NlaIV GGNNCC 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 211
OliI CACNNNNGTG 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 1 cut(s) 361
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 3 cut(s) 32, 113, 347
PpuMI RGGWCCY 1 cut(s) 423
Psp5II RGGWCCY 1 cut(s) 423
PspEI GGTNACC 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 2 cut(s) 52, 423
PspPPI RGGWCCY 1 cut(s) 423
PstNI CAGNNNCTG 1 cut(s) 215
RseI CAYNNNNRTG 2 cut(s) 218, 333
SaqAI TTAA 3 cut(s) 272, 399, 441
SatI GCNGC 3 cut(s) 31, 112, 346
Sau96I GGNCC 2 cut(s) 52, 423
SduI GDGCHC 1 cut(s) 340
SetI ASST 7 cut(s) 57, 157, 202, 272, 425, 468, 496
SfaNI GCATC 3 cut(s) 28, 187, 196
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 2 cut(s) 52, 423
SmiMI CAYNNNNRTG 2 cut(s) 218, 333
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 3 cut(s) 251, 450, 477
SspI AATATT 1 cut(s) 438
SspMI CTAG 1 cut(s) 173
TaaI ACNGT 3 cut(s) 93, 120, 458
TasI AATT 3 cut(s) 251, 450, 477
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 3 cut(s) 272, 399, 441
Tru9I TTAA 3 cut(s) 272, 399, 441
TscAI CASTG 2 cut(s) 125, 220
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 3 cut(s) 30, 111, 345
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 459
TspGWI ACGGA 3 cut(s) 116, 279, 307
TspRI CASTG 2 cut(s) 125, 220
Van91I CCANNNNNTGG 1 cut(s) 494
VneI GTGCAC 1 cut(s) 336
VpaK11BI GGWCC 2 cut(s) 52, 423
XapI RAATTY 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.