Rh3AG093100

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000125
Physical Location & Seq
Forward (+)
7631887 .. 7633074
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG093100.1

Sequence Viewer

Length: 594 bp
ATGGCGAGGGCACAGAGAATGAAGAGCAGCAACGATGCAGAGCTGAAAGTTATTGGCCTATTAGAATTGCCCTCGGATATCCTTAGTAACATCCTCTCGAGATTGTCTGCTGAATCACTCTTCTGCATCCGATGCGTGCCTAAGGCCTTTCTAAACATGGTCAATGACCCCTCTTTTGCTAGACTACATGCGCATCTACAAGTGCCTCAACTCATGCTTTTTAGTGGTCGAAAATGTCATCCTAAGCCTGGGGGGATTGAAGTTTTAGCATCCCTGCAATCAGTCAAATATGATGGCTACAAGTCCTTGACAAAAGCCCAATATGAAATTAGTGTCACCGCAAGGAAAATATACAACTTTGAGGACTCACATTACAAAATAGATTTTGTTTTCTACAACTTGTTTTTCTTGAGAAAATCTTGGGGAATTGGTCGCTTCTTAGTCAATCCTCTTAGGGGAGGGGAAGTTCTAAGACTTCCAATGAGTGACATGACAAAGTATGATGCTATGTTTTTAATGAGACGTACAGTTCAACAAAATTTGTTGGATGATCTACCATTAATGATCGAGAACTATAACAGAGATAGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

197

Amino Acids

22.67

Weight (kDa)

9.38

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 59 8.6e-08 F-box domain
F-box-like PF12937 21 - 59 1e-05 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 192
AciI CCGC 1 cut(s) 339
AcsI RAATTY 1 cut(s) 538
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 248, 455
AgsI TTSAA 2 cut(s) 260, 533
AjnI CCWGG 1 cut(s) 247
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 514
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 2 cut(s) 55, 144
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 538
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 560
AspLEI GCGC 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 97
AxyI CCTNAGG 1 cut(s) 141
BaeGI GKGCMC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 39
BccI CCATC 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 514
BfaI CTAG 1 cut(s) 180
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 249
BmeT110I CYCGRG 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 6 cut(s) 25, 122, 135, 202, 278, 493
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 72, 248
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 455
Bse21I CCTNAGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 72, 248
BseGI GGATG 5 cut(s) 90, 126, 238, 269, 553
BseLI CCNNNNNNNGG 2 cut(s) 248, 455
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 1 cut(s) 39
BshFI GGCC 2 cut(s) 57, 146
BsiHKCI CYCGRG 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 248, 455
BsmAI GTCTC 1 cut(s) 514
BsmBI CGTCTC 1 cut(s) 514
BsnI GGCC 2 cut(s) 57, 146
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 550, 564
BspACI CCGC 1 cut(s) 339
BspANI GGCC 2 cut(s) 57, 146
BspQI GCTCTTC 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 72, 248
BssMI GATC 2 cut(s) 550, 564
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 2 cut(s) 17, 125
BstAPI GCANNNNNTGC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 6 cut(s) 83, 141, 243, 439, 452, 470
BstF5I GGATG 5 cut(s) 90, 126, 238, 269, 553
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 2 cut(s) 553, 567
BstMAI GTCTC 1 cut(s) 514
BstMBI GATC 2 cut(s) 550, 564
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 57, 146
BtsCI GGATG 5 cut(s) 90, 126, 238, 269, 553
Cac8I GCNNGC 1 cut(s) 137
CfoI GCGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 525
CviAII CATG 4 cut(s) 157, 188, 214, 490
CviJI RGCY 6 cut(s) 43, 57, 146, 247, 297, 317
CviKI_1 RGCY 6 cut(s) 43, 57, 146, 247, 297, 317
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 6 cut(s) 83, 141, 243, 439, 452, 470
DpnI GATC 2 cut(s) 552, 566
DpnII GATC 2 cut(s) 550, 564
Eam1104I CTCTTC 2 cut(s) 17, 125
EarI CTCTTC 2 cut(s) 17, 125
Eco147I AGGCCT 1 cut(s) 146
Eco32I GATATC 1 cut(s) 79
Eco81I CCTNAGG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 247
EcoRV GATATC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 514
FaeI CATG 4 cut(s) 160, 191, 217, 493
FatI CATG 4 cut(s) 156, 187, 213, 489
Fnu4HI GCNGC 1 cut(s) 28
FokI GGATG 5 cut(s) 77, 113, 225, 256, 560
Fsp4HI GCNGC 1 cut(s) 28
FspAI RTGCGCAY 1 cut(s) 192
FspBI CTAG 1 cut(s) 180
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 28
HaeIII GGCC 2 cut(s) 57, 146
HhaI GCGC 1 cut(s) 193
Hin1II CATG 4 cut(s) 160, 191, 217, 493
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HinfI GANTC 2 cut(s) 113, 365
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 76, 131
Hpy188III TCNNGA 4 cut(s) 97, 99, 409, 568
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 523
HpyCH4V TGCA 3 cut(s) 38, 126, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 6 cut(s) 83, 141, 243, 439, 452, 470
HpySE526I ACGT 1 cut(s) 523
Hsp92II CATG 4 cut(s) 160, 191, 217, 493
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 2 cut(s) 550, 564
LguI GCTCTTC 1 cut(s) 17
LpnPI CCDG 3 cut(s) 234, 261, 287
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 6 cut(s) 25, 122, 135, 202, 278, 493
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 523
MaeIII GTNAC 3 cut(s) 86, 334, 485
MalI GATC 2 cut(s) 552, 566
MboI GATC 2 cut(s) 550, 564
MboII GAAGA 2 cut(s) 34, 112
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 4 cut(s) 65, 327, 426, 538
MlyI GAGTC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 7 cut(s) 82, 104, 181, 216, 355, 452, 459
MseI TTAA 2 cut(s) 515, 560
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 2 cut(s) 550, 564
NlaIII CATG 4 cut(s) 160, 191, 217, 493
NmuCI GTSAC 2 cut(s) 334, 485
NsbI TGCGCA 1 cut(s) 192
NspI RCATGY 1 cut(s) 191
PaeR7I CTCGAG 1 cut(s) 97
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 359
PpsI GAGTC 1 cut(s) 359
PshBI ATTAAT 1 cut(s) 560
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 515, 560
SatI GCNGC 1 cut(s) 28
Sau3AI GATC 2 cut(s) 550, 564
SchI GAGTC 1 cut(s) 359
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 1 cut(s) 13
SetI ASST 2 cut(s) 45, 526
SfaNI GCATC 6 cut(s) 25, 122, 135, 202, 278, 493
Sfr274I CTCGAG 1 cut(s) 97
SlaI CTCGAG 1 cut(s) 97
SmlI CTYRAG 2 cut(s) 97, 409
SmoI CTYRAG 2 cut(s) 97, 409
Sse9I AATT 4 cut(s) 65, 327, 426, 538
SseBI AGGCCT 1 cut(s) 146
SsiI CCGC 1 cut(s) 339
SspMI CTAG 1 cut(s) 180
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 526
TaqI TCGA 3 cut(s) 98, 229, 567
TasI AATT 4 cut(s) 65, 327, 426, 538
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 515, 560
Tru9I TTAA 2 cut(s) 515, 560
TseFI GTSAC 2 cut(s) 334, 485
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 2 cut(s) 334, 485
TspDTI ATGAA 2 cut(s) 35, 339
VspI ATTAAT 1 cut(s) 560
XapI RAATTY 1 cut(s) 538
XceI RCATGY 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 97
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.