Rw4G024660

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000125
Physical Location & Seq
Forward (+)
50538141 .. 50539328
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024660.1

Sequence Viewer

Length: 1188 bp
ATGTTTAAGTTGATCAACATGCCCGATCATATCATTGTGGATATCCTTATGAGACTGCCCCTGAAATCATTCTGTCGTCTCCGATGTGTCTCCAAGACCTGTATGAACATGATTGATTCCCCCCTTTTCACACAATTGCAAAAGGCACGTTTACTTAAGCTTTCTACCGACTACTACGCTGCTACTGCTTTTACTTCTGCTCCGGATGTACCTCAACTTGGAATGCTTCAGTATTCATCGAGGAGTATGAAGTGGCAGCCATTGGCATACAATGAGAAGCGTGGCTTGACACGAATAAAACATGCTCTCCCGATCTCAGAGTTGTTCATCTCGAGGTACTATGAAGTACATTTTGTTTTTTGCAACTTGTTTTTCCTTAAAATAAGTAAATGCGGATTTTGGCTCCCCAATTCGTGTTGCTTATTCAATCCCCTAAGGGGAGAAGTTCTAAAGATCCCAGCCTGTCCTACTAATCACGAGTACTTGCCAGTGGATTGGTTTGGTATGGGTTTTGATTGTACAACCAACACTTACAAACTCGTTTGCGTTTCGGGGAGTCAGGAAAATCACCATGTAACGGCTCATGTTTATGTTCTAGGCACTCACTCATCCTCATGGCAAGAGATACAATCAGTTCCTCCTCGTCGTTTAAGTAAAAAAAATGTATGTGCTTGTGGAGACATGCATTGGTTGGTCGAACAAGGAAGCCATGTTAATATTGCAGGAGGAGGAAGCCATATAATTTCTTTCGACTTCAAAAAAGGAGAGTTTTGCTGGACTCCTCATCCCACCTTAAAAGGGTTGAAATTACATGGTTATTTTGGATTTGGAAACTCTCGTTTGCTTGAAGACTTTCACTTGCTTAATATGAAAGGATCTATGGCTCTGGTGGATGCTAATTCATTAGAAGAATATATTCACATTTGGGTACTGAAAAGTTACCTTAAGAAGGAGTGGGCTTTAGATTACAAAATCAATACCCAAACACTTGTAGGATATCCTGAAGGTGGGTTACGAAATTATACTTGTTATGAATGGGAGCATGGAATAGCAGTCCATAAGGGTGACATGTGCTACTTTTTGGATCTAAGATGTGACTCCATAAAATGTGTCAAAGGAGGATTTGAGAAGATCTACAGTTTTACTGGAAGCTTGATTTCCTTGAAAAAACTGTCACAATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

395

Amino Acids

45.27

Weight (kDa)

8.84

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 44 5.6e-09 F-box domain
FBA_1 PF07734 114 - 266 5.5e-13 F-box associated beta propeller domain
FBA_3 PF08268 140 - 320 8.1e-19 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 1 cut(s) 393
AclWI GGATC 3 cut(s) 448, 883, 1092
AcuI CTGAAG 2 cut(s) 212, 1023
AfaI GTAC 6 cut(s) 210, 338, 348, 482, 520, 930
AfiI CCNNNNNNNGG 6 cut(s) 218, 437, 577, 798, 949, 1007
AflII CTTAAG 2 cut(s) 155, 944
AflIII ACRYGT 1 cut(s) 1068
AgsI TTSAA 5 cut(s) 427, 757, 805, 848, 1165
AluBI AGCT 2 cut(s) 160, 1152
AluI AGCT 2 cut(s) 160, 1152
Alw26I GTCTC 4 cut(s) 46, 83, 94, 672
AlwI GGATC 3 cut(s) 448, 883, 1092
Ama87I CYCGRG 1 cut(s) 331
Aor13HI TCCGGA 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 179, 256
Asp700I GAANNNNTTC 3 cut(s) 68, 852, 915
AsuHPI GGTGA 2 cut(s) 560, 1076
AvaI CYCGRG 1 cut(s) 331
AxyI CCTNAGG 1 cut(s) 434
BarI GAAGNNNNNNTAC 2 cut(s) 996, 1028
BauI CACGAG 1 cut(s) 476
BbsI GAAGAC 1 cut(s) 855
BbvI GCAGC 2 cut(s) 166, 268
BceAI ACGGC 1 cut(s) 594
BclI TGATCA 1 cut(s) 12
BcoDI GTCTC 4 cut(s) 46, 83, 94, 672
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 1135
BfrI CTTAAG 2 cut(s) 155, 944
BglII AGATCT 1 cut(s) 1131
BisI GCNGC 2 cut(s) 180, 257
BlsI GCNGC 2 cut(s) 181, 258
BmcAI AGTACT 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 404
BmsI GCATC 1 cut(s) 883
BpiI GAAGAC 1 cut(s) 855
BsaWI WCCGGW 1 cut(s) 202
BsaXI ACNNNNNCTCC 4 cut(s) 184, 214, 291, 321
Bsc4I CCNNNNNNNGG 6 cut(s) 218, 437, 577, 798, 949, 1007
Bse1I ACTGG 2 cut(s) 488, 1150
Bse21I CCTNAGG 1 cut(s) 434
BseAI TCCGGA 1 cut(s) 202
BseGI GGATG 4 cut(s) 211, 608, 784, 898
BseLI CCNNNNNNNGG 6 cut(s) 218, 437, 577, 798, 949, 1007
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 488, 1150
BseRI GAGGAG 4 cut(s) 256, 630, 741, 771
BseXI GCAGC 2 cut(s) 166, 268
BseYI CCCAGC 1 cut(s) 457
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 203
BslI CCNNNNNNNGG 6 cut(s) 218, 437, 577, 798, 949, 1007
BsmAI GTCTC 4 cut(s) 46, 83, 94, 672
BsmBI CGTCTC 1 cut(s) 83
BsmI GAATGC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 331
Bsp13I TCCGGA 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 518
Bsp143I GATC 7 cut(s) 12, 25, 312, 453, 875, 1084, 1131
BspACI CCGC 1 cut(s) 393
BspCNI CTCAG 1 cut(s) 329
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 404
BspPI GGATC 3 cut(s) 448, 883, 1092
BspTI CTTAAG 2 cut(s) 155, 944
BsrGI TGTACA 1 cut(s) 518
BsrI ACTGG 2 cut(s) 488, 1150
BssMI GATC 7 cut(s) 12, 25, 312, 453, 875, 1084, 1131
BssSI CACGAG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 1139, 1173
BstAFI CTTAAG 2 cut(s) 155, 944
BstAUI TGTACA 1 cut(s) 518
BstDEI CTNAG 3 cut(s) 316, 434, 1088
BstENI CCTNNNNNAGG 1 cut(s) 947
BstF5I GGATG 4 cut(s) 211, 608, 784, 898
BstKTI GATC 7 cut(s) 15, 28, 315, 456, 878, 1087, 1134
BstMAI GTCTC 4 cut(s) 46, 83, 94, 672
BstMBI GATC 7 cut(s) 12, 25, 312, 453, 875, 1084, 1131
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNSI RCATGY 4 cut(s) 22, 305, 685, 1072
BstSFI CTRYAG 1 cut(s) 1135
BstV1I GCAGC 2 cut(s) 166, 268
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 4 cut(s) 453, 875, 1084, 1131
BstXI CCANNNNNNTGG 1 cut(s) 495
BstYI RGATCY 4 cut(s) 453, 875, 1084, 1131
Bsu36I CCTNAGG 1 cut(s) 434
BtsCI GGATG 4 cut(s) 211, 608, 784, 898
BtsIMutI CAGTG 1 cut(s) 495
Csp6I GTAC 6 cut(s) 209, 337, 347, 481, 519, 929
CviQI GTAC 6 cut(s) 209, 337, 347, 481, 519, 929
DdeI CTNAG 3 cut(s) 316, 434, 1088
DpnI GATC 7 cut(s) 14, 27, 314, 455, 877, 1086, 1133
DpnII GATC 7 cut(s) 12, 25, 312, 453, 875, 1084, 1131
Eco32I GATATC 2 cut(s) 43, 998
Eco57I CTGAAG 2 cut(s) 212, 1023
Eco81I CCTNAGG 1 cut(s) 434
Eco88I CYCGRG 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 947
EcoRV GATATC 2 cut(s) 43, 998
EcoT22I ATGCAT 1 cut(s) 687
Esp3I CGTCTC 1 cut(s) 83
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FbaI TGATCA 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 180, 257
FokI GGATG 4 cut(s) 218, 595, 771, 905
Fsp4HI GCNGC 2 cut(s) 180, 257
FspBI CTAG 1 cut(s) 596
GluI GCNGC 2 cut(s) 180, 257
GsaI CCCAGC 1 cut(s) 461
HapII CCGG 1 cut(s) 203
HindIII AAGCTT 2 cut(s) 158, 1150
HinfI GANTC 4 cut(s) 116, 556, 778, 1097
HpaII CCGG 1 cut(s) 203
HphI GGTGA 2 cut(s) 560, 1076
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 2 cut(s) 83, 319
Hpy188III TCNNGA 6 cut(s) 203, 310, 331, 476, 560, 1001
Hpy8I GTNNAC 1 cut(s) 152
Hpy99I CGWCG 1 cut(s) 648
HpyAV CCTTC 2 cut(s) 943, 998
HpyCH4III ACNGT 2 cut(s) 1139, 1173
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 139, 363, 685, 722
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 3 cut(s) 316, 434, 1088
HpySE526I ACGT 1 cut(s) 148
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 7 cut(s) 12, 25, 312, 453, 875, 1084, 1131
LmnI GCTCC 3 cut(s) 205, 408, 1039
Lsp1109I GCAGC 2 cut(s) 166, 268
LweI GCATC 1 cut(s) 883
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 6 cut(s) 574, 938, 1011, 1064, 1094, 1173
MalI GATC 7 cut(s) 14, 27, 314, 455, 877, 1086, 1133
MboI GATC 7 cut(s) 12, 25, 312, 453, 875, 1084, 1131
MboII GAAGA 3 cut(s) 860, 920, 1141
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 4 cut(s) 453, 875, 1084, 1131
MluCI AATT 7 cut(s) 134, 409, 741, 806, 898, 1018, 1178
MlyI GAGTC 3 cut(s) 565, 772, 1091
Mph1103I ATGCAT 1 cut(s) 687
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 3 cut(s) 68, 852, 915
MseI TTAA 8 cut(s) 6, 156, 378, 650, 714, 794, 864, 945
MslI CAYNNNNRTG 3 cut(s) 588, 613, 1062
MspCI CTTAAG 2 cut(s) 155, 944
MspI CCGG 1 cut(s) 203
MunI CAATTG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 7 cut(s) 12, 25, 312, 453, 875, 1084, 1131
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 3 cut(s) 1064, 1094, 1173
NsiI ATGCAT 1 cut(s) 687
NspI RCATGY 4 cut(s) 22, 305, 685, 1072
PaeR7I CTCGAG 1 cut(s) 331
PciI ACATGT 1 cut(s) 1068
PctI GAATGC 1 cut(s) 228
PdmI GAANNNNTTC 3 cut(s) 68, 852, 915
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 2 cut(s) 181, 258
PleI GAGTC 3 cut(s) 564, 772, 1091
PpsI GAGTC 3 cut(s) 564, 772, 1091
PscI ACATGT 1 cut(s) 1068
PspFI CCCAGC 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 404
PsuI RGATCY 4 cut(s) 453, 875, 1084, 1131
RsaI GTAC 6 cut(s) 210, 338, 348, 482, 520, 930
RsaNI GTAC 6 cut(s) 209, 337, 347, 481, 519, 929
RseI CAYNNNNRTG 3 cut(s) 588, 613, 1062
SaqAI TTAA 8 cut(s) 6, 156, 378, 650, 714, 794, 864, 945
SatI GCNGC 2 cut(s) 180, 257
Sau3AI GATC 7 cut(s) 12, 25, 312, 453, 875, 1084, 1131
ScaI AGTACT 1 cut(s) 482
SchI GAGTC 3 cut(s) 565, 772, 1091
SetI ASST 9 cut(s) 101, 151, 162, 214, 338, 794, 945, 1009, 1154
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 1 cut(s) 1135
Sfr274I CTCGAG 1 cut(s) 331
SlaI CTCGAG 1 cut(s) 331
SmiMI CAYNNNNRTG 3 cut(s) 588, 613, 1062
SmlI CTYRAG 3 cut(s) 155, 331, 944
SmoI CTYRAG 3 cut(s) 155, 331, 944
Sse9I AATT 7 cut(s) 134, 409, 741, 806, 898, 1018, 1178
SsiI CCGC 1 cut(s) 393
SspI AATATT 1 cut(s) 718
SspMI CTAG 1 cut(s) 596
TaaI ACNGT 2 cut(s) 1139, 1173
TaiI ACGT 1 cut(s) 151
TaqI TCGA 4 cut(s) 239, 332, 696, 750
TasI AATT 7 cut(s) 134, 409, 741, 806, 898, 1018, 1178
TatI WGTACW 3 cut(s) 346, 480, 518
TfiI GAWTC 1 cut(s) 116
Tru1I TTAA 8 cut(s) 6, 156, 378, 650, 714, 794, 864, 945
Tru9I TTAA 8 cut(s) 6, 156, 378, 650, 714, 794, 864, 945
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 3 cut(s) 1064, 1094, 1173
TseI GCWGC 2 cut(s) 179, 256
Tsp45I GTSAC 3 cut(s) 1064, 1094, 1173
TspDTI ATGAA 8 cut(s) 119, 225, 263, 316, 357, 884, 891, 1047
TspRI CASTG 1 cut(s) 495
Vha464I CTTAAG 2 cut(s) 155, 944
XagI CCTNNNNNAGG 1 cut(s) 947
XceI RCATGY 4 cut(s) 22, 305, 685, 1072
XhoI CTCGAG 1 cut(s) 331
XmnI GAANNNNTTC 3 cut(s) 68, 852, 915
XspI CTAG 1 cut(s) 596
ZrmI AGTACT 1 cut(s) 482
Zsp2I ATGCAT 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.