Rh5DG033000

F-box kelch-repeat protein At3g06240-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000125
Physical Location & Seq
Forward (+)
2307067 .. 2307801
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG033000.1

Sequence Viewer

Length: 735 bp
ATGGGGTTTGATAGTATTACCAATACCCTCAAGATTCTTCTTGTTACAAAATTTGATGCAGCAGACTGCATGGTAGCTCAAGTTCTTGTACTAGGGAAAAGCTCATGGAGACAGATATCCTCAGCTCCTCTTTGTTATATGTCCGCTATTTGTAATTTATTTACGCCGAAGAATGCATGTGCATATGAAGACATGCATTGGTTACGTGGTGATGCCATGGTAAAAGAAAGTGAAGCTATCATTTCTTTTGACTTCAAGAAAGAAGAGTTTTGTTGGACACCTCATCCCAAGCTACGAAGCTCGAAGGAGTACACTCGTTTGTACATGCACTTGCACTTGCTTACTCTTAAAGGATCTCTGGCCCTAGTGGATACTTCATCATCAGAAGGTATGACTACAAATATTGAGATATGGCTGATGAAACATTATGAAAAAAAAGAGTGGACAAAAGATTACAGCATAATTATCGAAATGTTTCACTTGCGTAAGGAGTTCGGAATGTTGTTGACAGATGTTACTTGTGATGAATGGGAGCATGGCATATTTTTCAAAAACTTTGAGAATATGCCTGCATTCTTTTTAGATCTAAGATCTGCTCTCATGAATCCAGTAAGATGTGAGAGTGGGATCCGTACCAAAATCTTTAGCTACACACGGAGCTTTATATCCTTGAAACACTATGACATTTTGGTTGAAGCTGAACAAGGCACTGGAAGTCTTAAAAAGTTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

244

Amino Acids

28.28

Weight (kDa)

6.71

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 1 - 211 1.4e-17 F-box associated beta propeller domain
FBA_1 PF07734 2 - 153 2.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000125)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48550 AT5G48550
fragaria_vesca FvH4_1g00551 FvH4_1g00570 FvH4_1g00691 FvH4_1g00700 FvH4_1g00812 FvH4_1g20161 FvH4_1g25190 FvH4_2g04190 FvH4_2g20921 FvH4_2g25871 FvH4_3g13181 FvH4_3g19662 FvH4_3g40671 FvH4_4g22410 FvH4_4g34520 FvH4_4g34580 FvH4_5g06780 FvH4_5g07350 FvH4_5g07470 FvH4_5g07510 FvH4_5g08848 FvH4_5g31171 FvH4_5g38320 FvH4_6g03511 FvH4_6g09071 FvH4_6g09550 FvH4_6g09801 FvH4_6g09911 FvH4_6g14781 FvH4_6g22690 FvH4_6g45801 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47440 FvH4_6g47471 FvH4_6g47480
malus_domestica MD04G1179800.v1.1 MD11G1005600.v1.1 MD11G1006200.v1.1 MD11G1006300.v1.1 MD11G1006900.v1.1 MD12G1195000.v1.1 MD12G1195500.v1.1 MD12G1195600.v1.1
prunus_persica Prupe.2G095600_v2.0.a1 Prupe.2G095700_v2.0.a1 Prupe.2G095800_v2.0.a1 Prupe.2G095900_v2.0.a1 Prupe.2G096000_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G196700_v2.0.a1 Prupe.2G209200_v2.0.a1 Prupe.3G238400_v2.0.a1 Prupe.7G182200_v2.0.a1 Prupe.7G194900_v2.0.a1 Prupe.7G195100_v2.0.a1 Prupe.7G195400_v2.0.a1 Prupe.8G061400_v2.0.a1
pyrus_communis pycom01g13020 pycom04g15890 pycom09g19490 pycom09g19510 pycom10g28160 pycom12g18120 pycom12g18180
rosa_chinensis RchiOBHm_Chr2g0085201 RchiOBHm_Chr2g0164001 RchiOBHm_Chr3g0449831 RchiOBHm_Chr3g0460411 RchiOBHm_Chr3g0480281 RchiOBHm_Chr4g0428611 RchiOBHm_Chr5g0016491 RchiOBHm_Chr6g0253541
rosa_laevigata RLG00000004425 RLG00000004426 RLG00000005189 RLG00000005350 RLG00000007140 RLG00000015004 RLG00000015666 RLG00000015801 RLG00000015804 RLG00000015807 RLG00000018680 RLG00000021432 RLG00000021625 RLG00000021626 RLG00000023498 RLG00000023500 RLG00000023502 RLG00000023505 RLG00000025014 RLG00000025039 RLG00000025070 RLG00000025093 RLG00000025094 RLG00000025791 RLG00000026900 RLG00000031177
rosa_multiflora Rmu_co8452909.1_g000001 Rmu_co8488687.1_g000001 Rmu_sc0000610.1_g000006 Rmu_sc0000770.1_g000026 Rmu_sc0001755.1_g000003 Rmu_sc0002072.1_g000002 Rmu_sc0002676.1_g000002 Rmu_sc0003133.1_g000022 Rmu_sc0003797.1_g000014 Rmu_sc0003901.1_g000002 Rmu_sc0003901.1_g000004 Rmu_sc0003906.1_g000004 Rmu_sc0004212.1_g000002 Rmu_sc0004621.1_g000026 Rmu_sc0006704.1_g000010 Rmu_sc0006944.1_g000006 Rmu_sc0008647.1_g000003 Rmu_sc0010698.1_g000005 Rmu_sc0010842.1_g000001 Rmu_sc0010911.1_g000004 Rmu_sc0011989.1_g000005 Rmu_sc0013983.1_g000002 Rmu_sc0016910.1_g000001 Rmu_sc0017276.1_g000001 Rmu_sc0020812.1_g000004 Rmu_sc0024877.1_g000001 Rmu_sc0025932.1_g000003 Rmu_ssc0000432.1_g000018
rosa_roxburghii Rroxscaffold_1G00072180 Rroxscaffold_1G00073060 Rroxscaffold_1G00074760 Rroxscaffold_2G00084790 Rroxscaffold_2G00086850 Rroxscaffold_2G00121570 Rroxscaffold_2G00154120 Rroxscaffold_3G00263530 Rroxscaffold_3G00273960 Rroxscaffold_4G00284960 Rroxscaffold_4G00284970 Rroxscaffold_5G00370300 Rroxscaffold_6G00401620 Rroxscaffold_6G00401630 Rroxscaffold_6G00401640 Rroxscaffold_6G00416730 Rroxscaffold_6G00419520 Rroxscaffold_6G00419780 Rroxscaffold_6G00420290 Rroxscaffold_6G00427650 Rroxscaffold_7G00176150 Rroxscaffold_7G00211790
rosa_rugosa Rorug02G0239000
rosa_samantha Rh1DG375000 Rh2AG006800 Rh2AG009900 Rh2AG024700 Rh2AG297700 Rh2AG574100 Rh2AG589700 Rh2AG589800 Rh2DG008500 Rh2DG012500 Rh2DG025200 Rh2DG321300 Rh2DG594200 Rh2DG612500 Rh3AG021800 Rh3AG093100 Rh3AG095100 Rh3AG095700 Rh3AG233400 Rh3AG233500 Rh3AG233600 Rh3CG021300 Rh3CG097200 Rh3CG097300 Rh3CG099400 Rh3CG100200 Rh3CG103500 Rh3CG103600 Rh3CG106200 Rh3CG263600 Rh3CG263700 Rh4DG287300 Rh5AG034300 Rh5AG495600 Rh5DG032900 Rh5DG033000 Rh5DG051400 Rh5DG532200 Rh6BG054100 Rh6BG337400 Rh6CG053800 Rh6CG343700 Rh6CG343800 Rh7AG043600 Rh7AG043800 Rh7AG121200 Rh7AG121300 Rh7DG025000 Rh7DG043300 Rh7DG124500 Rh7DG124600
rosa_wichuraiana Rw1G033430 Rw2G000640 Rw2G001940 Rw2G001990 Rw2G023800 Rw2G047500 Rw2G049160 Rw3G008010 Rw3G008540 Rw3G021000 Rw4G024660 Rw5G003140 Rw6G005370 Rw7G041040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AclWI GGATC 3 cut(s) 361, 622, 635
AcsI RAATTY 1 cut(s) 50
AfaI GTAC 4 cut(s) 90, 311, 323, 634
AgsI TTSAA 4 cut(s) 256, 550, 673, 695
AluBI AGCT 9 cut(s) 77, 102, 125, 236, 292, 300, 648, 660, 698
AluI AGCT 9 cut(s) 77, 102, 125, 236, 292, 300, 648, 660, 698
Alw26I GTCTC 1 cut(s) 103
AlwI GGATC 3 cut(s) 361, 622, 635
AoxI GGCC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 474
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 221
BamHI GGATCC 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 195
BbvCI CCTCAGC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 71
BcgI CGANNNNNNTGC 2 cut(s) 448, 482
BciVI GTATCC 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 2 cut(s) 92, 365
BfuI GTATCC 1 cut(s) 364
BglII AGATCT 2 cut(s) 583, 590
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 629
BmsI GCATC 2 cut(s) 46, 202
BpiI GAAGAC 1 cut(s) 195
Bpu10I CCTNAGC 1 cut(s) 121
BpuEI CTTGAG 2 cut(s) 14, 63
BsaAI YACGTR 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 608, 715
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 608, 715
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 103
BsmI GAATGC 2 cut(s) 178, 572
BsnI GGCC 1 cut(s) 362
Bsp1407I TGTACA 1 cut(s) 321
Bsp143I GATC 4 cut(s) 353, 583, 590, 627
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 362
BspCNI CTCAG 1 cut(s) 134
BspHI TCATGA 1 cut(s) 600
BspLI GGNNCC 1 cut(s) 629
BspPI GGATC 3 cut(s) 361, 622, 635
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 2 cut(s) 608, 715
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 4 cut(s) 353, 583, 590, 627
BssT1I CCWWGG 1 cut(s) 216
Bst6I CTCTTC 1 cut(s) 258
BstAUI TGTACA 1 cut(s) 321
BstBAI YACGTR 1 cut(s) 206
BstC8I GCNNGC 1 cut(s) 570
BstDEI CTNAG 2 cut(s) 121, 587
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 4 cut(s) 356, 586, 593, 630
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 4 cut(s) 353, 583, 590, 627
BstNSI RCATGY 3 cut(s) 180, 196, 328
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 4 cut(s) 353, 583, 590, 627
BstYI RGATCY 4 cut(s) 353, 583, 590, 627
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 708
Cac8I GCNNGC 1 cut(s) 570
CciI TCATGA 1 cut(s) 600
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 4 cut(s) 89, 310, 322, 633
CviAII CATG 8 cut(s) 70, 105, 177, 193, 217, 325, 536, 601
CviQI GTAC 4 cut(s) 89, 310, 322, 633
DdeI CTNAG 2 cut(s) 121, 587
DpnI GATC 4 cut(s) 355, 585, 592, 629
DpnII GATC 4 cut(s) 353, 583, 590, 627
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 216
Eco32I GATATC 1 cut(s) 117
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 2 cut(s) 178, 198
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 8 cut(s) 73, 108, 180, 196, 220, 328, 539, 604
FatI CATG 8 cut(s) 69, 104, 176, 192, 216, 324, 535, 600
FauNDI CATATG 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 2 cut(s) 92, 365
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 362
Hin1II CATG 8 cut(s) 73, 108, 180, 196, 220, 328, 539, 604
HincII GTYRAC 1 cut(s) 507
HindII GTYRAC 1 cut(s) 507
HinfI GANTC 2 cut(s) 34, 604
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 3 cut(s) 312, 444, 507
Hpy188I TCNGA 2 cut(s) 385, 497
Hpy188III TCNNGA 3 cut(s) 31, 256, 601
Hpy8I GTNNAC 3 cut(s) 312, 444, 507
HpyAV CCTTC 2 cut(s) 298, 380
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 8 cut(s) 59, 69, 176, 182, 196, 328, 334, 572
HpyF3I CTNAG 2 cut(s) 121, 587
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 8 cut(s) 73, 108, 180, 196, 220, 328, 539, 604
Kzo9I GATC 4 cut(s) 353, 583, 590, 627
LmnI GCTCC 3 cut(s) 130, 532, 657
LpnPI CCDG 4 cut(s) 344, 582, 621, 696
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 2 cut(s) 46, 202
MaeI CTAG 2 cut(s) 92, 365
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 3 cut(s) 43, 201, 514
MalI GATC 4 cut(s) 355, 585, 592, 629
MboI GATC 4 cut(s) 353, 583, 590, 627
MboII GAAGA 4 cut(s) 29, 181, 200, 275
MflI RGATCY 4 cut(s) 353, 583, 590, 627
MluCI AATT 3 cut(s) 50, 154, 462
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 4 cut(s) 38, 130, 138, 291
Mph1103I ATGCAT 2 cut(s) 178, 198
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 3 cut(s) 348, 720, 733
Mva1269I GAATGC 2 cut(s) 178, 572
NcoI CCATGG 1 cut(s) 216
NdeI CATATG 1 cut(s) 184
NdeII GATC 4 cut(s) 353, 583, 590, 627
NlaIII CATG 8 cut(s) 73, 108, 180, 196, 220, 328, 539, 604
NlaIV GGNNCC 1 cut(s) 629
NsiI ATGCAT 2 cut(s) 178, 198
NspI RCATGY 3 cut(s) 180, 196, 328
PagI TCATGA 1 cut(s) 600
PctI GAATGC 2 cut(s) 178, 572
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 2 cut(s) 34, 604
PkrI GCNGC 1 cut(s) 61
Ppu21I YACGTR 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 629
PspPI GGNCC 1 cut(s) 361
PsrI GAACNNNNNNTAC 2 cut(s) 66, 98
PsuI RGATCY 4 cut(s) 353, 583, 590, 627
RsaI GTAC 4 cut(s) 90, 311, 323, 634
RsaNI GTAC 4 cut(s) 89, 310, 322, 633
SaqAI TTAA 3 cut(s) 348, 720, 733
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 4 cut(s) 353, 583, 590, 627
Sau96I GGNCC 1 cut(s) 361
SfaNI GCATC 2 cut(s) 46, 202
SmlI CTYRAG 2 cut(s) 29, 78
SmoI CTYRAG 2 cut(s) 29, 78
Sse9I AATT 3 cut(s) 50, 154, 462
SsiI CCGC 1 cut(s) 144
SspI AATATT 1 cut(s) 403
SspMI CTAG 2 cut(s) 92, 365
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 208
TaqI TCGA 2 cut(s) 302, 468
TasI AATT 3 cut(s) 50, 154, 462
TatI WGTACW 3 cut(s) 88, 309, 321
TfiI GAWTC 2 cut(s) 34, 604
Tru1I TTAA 3 cut(s) 348, 720, 733
Tru9I TTAA 3 cut(s) 348, 720, 733
TscAI CASTG 1 cut(s) 715
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 6 cut(s) 201, 366, 434, 444, 540, 617
TspGWI ACGGA 2 cut(s) 620, 670
TspRI CASTG 1 cut(s) 715
XapI RAATTY 1 cut(s) 50
XceI RCATGY 3 cut(s) 180, 196, 328
XmnI GAANNNNTTC 1 cut(s) 474
XspI CTAG 2 cut(s) 92, 365
Zsp2I ATGCAT 2 cut(s) 178, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.